TCONS_00035217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035217
Unique NameTCONS_00035217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035217 ID=TCONS_00035217|Name=TCONS_00035217|organism=Clytia hemisphaerica|type=transcript|length=1661bp
GCGTGGAATGCGTGAAGCATCAAGACCTGTTTGgggtttaatttttttgc
tgactcaTGTAAATTTAGAGGCTATTTCAAAAGGACGGCGTAGCCGTGGT
GGTTAAACTcacaactttttcaaattttgtggtTGATACTGTCCTGTCAA
TCTCTACTCTAGCAACTTCACTAAAGTACAAAGCGCATCGATTAAGATAT
GGGGCAAAACCAATCAGGACCTGGTGGTGGCCGTGGCAAAAAAGATGACA
AGGACAAGAAGAAGAAATATGAACCACCTATTCCAACACGTGTTGgcaaa
aaagctaaaaagaaTCGAGGGCCAGATGCTGCTAATAAATTACCTGTTGT
CACACCACACCGAAATTGTCGTCTGAAGCTTTTAAAACTGGAACGTATCA
AAGATTTCTTATTGATGGAAGAAGAATTCATTCAGAATCAAGAACGATTG
AAGCCACAAGAAGAAAAACACGAAGAAGAACGCAGCAAGGTAGATGATCT
TCGTGGTACACCAATGTCTGTTGGTTCACTGGAAGAAATCATCGATGACA
ACCACGCTATCGTTTCCACATCTGTTGGCTCAGAACATTACGTCAGCATG
TTATCATTCGTCGATAAAGATCTTTTAGAACCAGGCTGCTCCGTTTTACT
CAATCACAAAgTTCACGCGGTGATCGGGGTGCTAGGTGACGATACCGACC
CCATGGTGAGCGTCATGAAACTCGACAAAGCACCACAAGAATCGTACGCA
GATATCGGAGGTCTCGATAAACAGATTCAAGAAATTAAGGAATCGGTAGA
ATTGCCGTTAACACATCCCGAACTTTATGAAGAAATGGGGATCAAACCAC
CCAAAGGAGTCATTCTCTACGGACCCCCTGGAACAGgaaaaacgcTGCTA
GCAAAAGCTGTCGCAAACCAAACATCTGCCACCTTCTTACGTGTTGTCGG
CTCCGAACTTATACAAAAATATTTGGGTGATGGACCGAAGTTGGTGCGTG
AATTATTTCGCGTAGCTGAAGAACATTCGCCTTCAATTGTTTTCATCGAT
GAGATAGACGCGGTCGGCACTAAAAGATACGACTCCAATTCTGGAGGTGA
ACGTGAAATTCAGAGAACTATGTTGGAATTGTTGAATCAGTTGGATGGGT
TTGATGGTCGTGGTGATGTCAAGGTTATAATGGCAACCAATCGAATAGAT
TCATTGGACCCTGCTCTGATTCGACCAGGCCGTATCGACAGGAAAATTGA
ATTCCCTCTTCCCGATCAAAAAACTAAACGAAGAATATTCGGTATTCACA
CCAATAGAATGACTTTATCCAAAGATGTCGATTTAGAAGAATATATTTTA
GCCAAAGATGATTTATCCGGAGCTGATATCAAGGCTATTTGTACGGAAGC
CGGTCTTCTCGCTTTACGAGAGCGAAGAATGAAGGTTACGaatgaagatt
tcaaaaaagcgAAGGAGAACGTCTTGTATCGAAAACAAGAGGGTACTCCA
GAAGGCTTGTACCTTTAATACAATCGTCgcccttttttgattttatttct
aaattgtatttaaattttaggttttttggacctacctggaggtcctataa
attaacctttgttcgtccgtccgtctgtccgtccgtccgtctgttaccag
cttttctcgag
Run BLAST on NCBI

transcript from alignment at sc0001275:52608..68657+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035217 ID=TCONS_00035217|Name=TCONS_00035217|organism=Clytia hemisphaerica|type=transcript|length=16050bp|location=Sequence derived from alignment at sc0001275:52608..68657+ (Clytia hemisphaerica)
GCGTGGAATGCGTGAAGCATCAAGACCTGTTTGgggtttaatttttttgc
tgactcaTGTAAATTTAGAGGCTATTTCAAAAGGACGGCGTAGCCGTGGT
GGTTAAACTcacaactttttcaaattttgtggtTGATACTGTCCTGTCAA
TCTCTACTCTAGCAACTTCACTAAAGTACAAAGCGCATCGATTAAGATAT
GGTAAGAttactctttttttatttgcttgggctcaaagggccattccaga
atttgccTGTAACAGGGGGGCGAACGACACAGGATTTttgagggcaaaag
ttttcaccaaaattcgaaatttccacaaggcaatacacctttcccgtaat
tcaaagttctcagaaatggcccgggaaaatgtgcggtccaccgttgtgta
taaaattgtttgggagttaaaaaacgcgtttttgcctgcgagggcggggt
ttagggaaagtgggatttCAGCATCTAACTTTTGACAGCcaatcttcttt
tggcaaaatattttcagggtggtataatctcaaaaaaccaactttcccta
aggtaGGGTGCGCACttgtcgggattttttgcgcggaacgagggagaatt
tacaaaaatgaacttcaatgcattagtacttacctttatgctttaaatca
tccaaatctattcattctttttttaaatcaatcaggaattatcagggaaa
caagtaaaaaaaactgtatccaggtatctattttctttccaaagtggaag
atattcatgttttttgacgtcaaggtgaaaacgcgatcagtgaaaattcc
aagcacttttctgTGGCCGTTATACGGCCAgaaaactcaattttaaattg
agttttgaaactcaatatttgaagaaaagaatttttttcagtcataaaat
gtcgaaaaaataTTGACAGTAAACCTTATAAACAATAGTCAAAGTTATTT
ACTCTATAATCAAAGGTAAGATCAATTTCTCTCATTCTTTATATCTTTCA
acaatatattattttttcttctctctttGTGTGTCTCTTGCCATTCTTTT
Gacgaaatcaacatcaaaacattcgaatcgaaagctcattagaaaaatat
caaaacatttgtTTTTTAAGGACCATTCTTTTTATTGTTACCtacagttt
tatttttttattctattgtAGAGTAGAATTATTAACCGTTTTATTGATTT
ACTAAGAAGGCCGCTAGAAATATGTCCCATTTTCTGATCAATTTTTCctt
tatattcacttttttaaaCTCCAGATTTGTTAGAATAATATCGAGTGGAA
AGTACATTCCACAATAGACaagcagctgaggtcacaaaaaaattggacgg
ggtGCAAACAATCTcaaaccacttttaattgaaaatatacaacctaaata
tctagaaaccatcaaccggagttgttgaaattacttaccggacgtgtccg
gtaatattttagtacctgatgacgtcatgcagcgtgcccataggctaact
gaaaaaattttgagaaccaacttagacatattatataccgatcgaagcgt
tttttaacgtagattaagaaaatggtcagtaaccatatctgaaaattttg
ctataaaaagttaGAACGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGAAAGGTCGta
tctattgaaaacaactgtttaaagtttgctcgcaaactttgtagctactg
cacttttttatgtgacctcagctgcctgactaCGTTGTGCTTgctccttt
tttattttgaaatcttactttaataaataaagctttgtttcttttgttct
tgaagcatttcttttgttcttcaagcatttcttttgttcttcaaCCATTT
CTTTCCATCAGGGGCCGTAAGCTTTAAAAAAGACCTGTTTTAACCAGTCT
AGAagggctaattttcaaaaatgttctcccgtcggcgccaaccatcgtgg
cgcctccttagacactaatTACACTAAACTATGGCCCTATCACCTAACAC
CTACcactttcaaagtggagccgcGGCCCCTATCCATGCATGGTTAAAGT
GTATTCTATTATAGTTACTAGTAAACGATAATTTTGTTTATGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGATATCATTAATAAACTCTTAACTAGGAGTCCGTTAGGGGGGGGG
TCTCAGATAATAGCAATGGCATGgctgaaactcaatttctagatCAGAAA
AACGGCCAGTgggaaaagtgcttggaattttgcctggcgatttagcgctg
accatTCTAAAACAGAAtcaaataacatgaaaaccagaaaatgattcttc
aatgggaatcaaaactataaagtgcacttacaaacatcaatttgtcagat
ctaacaaaatttataacggcactgtcatcattgacaataaaacgaacaat
attctgtcaagagccttgtaaacattccaacaacttccatcgaaatgagc
tatcacagctcagtctaccatttttagcgcagtccaaggattgagccgag
aactctcacagagcgcccgagctcccgaaaaacttcaatctgtcaatcat
tttctcaagcataGAGTACGCaaagcaattctagctttacgatagtgccg
cggatcatcaatggatagtattaaATTATCATTACtgtatccctttattt
tcattcatagaacttttgcaaaaaaaggaaaaatagaaaagttgtatttt
ttactgctctattcacatactgaatttgaaagatcttctatgtggcgttt
ttttgcaaacttcaAAAAAattgatttttgtcccgcctttgcgggatttt
ggctcaagtgcttgagtgcagcatagggtacaaagtccaaatatgcgttt
cccgtaatttttgtatgaagagttaggtctacactgtcaaAGATAagcac
aagtgtttcaaccggaaacgcaatcgaatctcaatcgaacgtcaaaattc
tgggtaatattcgattggttcgattgttgttcgactggttcgattgtcga
ttccgttcgattgagatcgtttggctttattcttgcagcttcccaacatc
caagctctcaaatatcacaagccgaatgagagtactttcgatttcccgta
gaaattatgcgatgaacaatccgggggtcaatgaatcgatgatcaaacgc
aattgaacgcaatcgaagttcaatcgaacgcaatcaaatatcaatctaat
ctgaaaattgcggtaatattcgattgagattcgattgcgttcgacaatcg
aatttcaatcggtcgattgtgttcgatttggttcgactggttcgatcgtc
gattccgttcgattgagatcgtctgggcattatcaattacttaggtatta
gcttttctcaagattggctctttcattctttatgattttttgcacaaaga
tctataactataaaccctggaatgtgacggagcctgattttcgaaaaaaa
atgtttttgggcaaattNcacaaagatgcataactataaaccctggaatg
tgacggagcctgattttcgatgaaaaaaatgtttttgggcaaatttgggc
caaaaaacggcaatattggatcattgtttttttcagattttttttgcatg
aaagtagataaaagatggctcaagcagattttttcagcagaatttttcag
ctcaaaaaacgcatctttaattataagaatcactattaatataaagcata
catcaatgttcttagccaaattactaaattttttgatgagatagatgttt
tttttgctcacgaagtcttcaatatgaaagaatatttcaagagtatgaaa
ttttggtttttaaacgtttttttataagaaacaaacaactaattttaata
gatcgtcactatttgtgttctgaatgattgtttaatggtcatgctcatgt
agatatcaattatatgtgttaaatgcataaccaggtaggtccataaaagt
atcacttgtttaaacacttttcagctttttaaaTGAAGAGAATCTCTAAA
TAGGttcattttattttgtacatttgaaaagtgcaggtattttctccttt
gttacgagtgattaatcgttaattgcacgacaaaacatacgattccgagg
taatcgtcagtaaataatcattagtaaatcatagttttgNTCACCACCCG
GCTAActtgaaaatttatattttgctAGTAGAATTAATTTATAATTGCTA
Tgtaattagtactagtaatcgtatggtttggagtgcaattaacgattaat
cacgagtaacaaacgacaaaacatacgattccgaggtaatcgtcataata
taaacattcgaaaacctcctttttttcttttgtgtttaaaaagaaaacac
tgcagtgtaatttttctttgttttcaattaaaagaagctattgtaacgta
aaatgtctttgttttttattatatagtaaaaaaaaagtctctggagagaa
aagaataagaggcccccgccgaagagtgcaaaaagtggtaatagtgcaat
taacgattaattgcactcctctaaaccaatcagattcgagtaattttgca
cggctgacgattagtACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNta
attttgcacggctgacgattaccaCTAAAATTGACCACAAACTGACTGAA
AAAAAGAGtagaaaaattgataaatcaCATGACTTTAGTTTCTTCATGGG
GGTTGGTTAAATCCGTtcatttttcaagtttcaattaaaatttattctca
acttcagttgagttagaatctgagaatgtgtgtctgtgtgtgtgtctgtg
tgtctgtgtgtatgtcccaaaactttggggcagcctggagacttcaaaaa
ttgttcgatttgggtgaaatttagcacacttgttccttgggtgaatatct
gggggtgtttttttcatttttcaaaaattttgatttttggggtctgggga
cgagttttcgccaaaacgaggctaaaactttggggtagcctggagacttc
aaaaattgttcgatttggctgaaattttgcacacttgctccttgggtgaa
tatctgggggtgtttttttcatttttcaaaaattttgatttttggggcct
ggggacgagtttttcgccaaaacgaggctNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacgag
tttttcgccaaaacgaggctaaaactttggggcagcctggagacttcaaa
aattgttcgatttggctaaaattttgcacacttgttNNNNNNNNNNNNNN
NNNCAATcctggccataatatttgagacaaaagggaaattcccacgaaat
cttataaccacaagtattttggaagcgctctaaattaggttagacgaata
gagttttaactctgagttttaacattagacttaagacttagaatctgagg
atccaaaagtcccagaatggtccaacagggctcagaatatagcctggaag
tcaattaaccccacccaaatcgaaatactcgaataaatttatcaattagc
ccaaaaacgactttctcgcccgaattccaaattttgaaaaacgaggaaat
aagctaaattctcaatatattttggcccGGATTGTGGGGgcgctttttgc
atttttcaaaaatttagatttttggggcctagggacgagttttttgccaa
aacgaggctaaagctttgaagcagcctacaggggtctacaattgggccta
tggataatttgaagccactgaagttgagcccagtgcgttgcgcacgttcg
actattgcTAATTCCTAAGCGTCAAAATAAAACCTTGTGAATTAGGCTAC
ATGTACTTTTAGGCCTGTCTCCACTTGCCCGCACATCAATTGCAATTTTT
GACTTCAATTCTTTAAgcttggagaaaaaaaaacaaagcgtACTCAACTG
TTACATCAGAATGGACCAAttgagttgcttcatttttcttttgaccaaag
CGCAGACGCTTTTCTTGAAAAGAAGTGATCGTAGTGCGCGTTGTGGAGAC
CAGCCTTAacgaaaatcaaatttaaattttttaggtaaaagataactttt
tcatttatttttggtATTAGGGGCAAAACCAATCAGGACCTGGTGGTGGC
CGTGGCAAAAAAGATGACAAGGTAAGGatttctcatatttttcatatacT
TAAGATTGCATTTTACTATATCATTTGTCTAATTACACATTATCATTTTC
TCTCATTGTACAACAATCTGGTGATAAAGCTGACACCTACTTAAAAGTTA
TCAAACCTTCAGGTTTTAGGAGTGCTGATATTCCCTTTTGGCCTTAAACC
TGCTtaaaccctattcatactaggcttttaggggcggttcagagctaagg
gggagggggagcttttcctgtaccaccccttaacttttgatctagttggt
ctttttggataaaatttggcacacaagatccttgttacacaaggtaactt
ttgacaaaaatttttttttatgacatCACTCATCAtacccaaagtgagca
aaaaccgaagatttcctttgttcttataaatagctaatgtattctaacaa
aggctttagaaaaaagttgagtttaaaatgcttattttgtcctaaatatt
caataaattacggtttaaacgatatatttgacattaacaataattttgta
ttggaaaagtgtcaatttttgcgACATCTTAcggtcagaaatgtcatcat
gctcataGTGTGAAagtttttaggtttaaaattttttttattttgaagct
aaataaaagttagaaatttacagaaaatttcatggcaaaagctctattat
ttcaggtactattaccaataatttgacctcccaacagaaacagccccctc
ctaggacgaatagggttaagattATTTGATTATTTAGGAACTATCTGTAT
TTAAGAATATCATGCAAACCTTAAAAGATGTTGAGTCTTAGAAcgctctt
attttcactattttctgagtatttttatgtaatttcttagaaattgggtg
ttttcgagCCTACAAAGCcttaatgtttttaacttgttctttaatatttt
ctttaacgtCATAGCCTTACGtacttatatagtttgttcttataaaaaac
gtaagTCTTTTACTTAATTAGGACAAGAAGAAGAAATATGAACCACCTAT
TCCAACACGTGTTGgcaaaaaagctaaaaagaaTCGAGGGCCAGATGCTG
CTAATAAATTACCTGTTGGTATGGAAAATGCTATATTAATTGCTACTTCA
TACTTCCAGTAATAATTGCAATTGCTCTCAAATTTTGTGCCTCAATTTCG
GTTATCACTTTTAACCCATACCCAACTAATTATACAAAGTATTGGAAATG
GGCATCAAGTGATTTCATGATATTAACTATGGGCTGCTTCTAATATTTAC
CTACTGTAGTATGATTATTTTTGTATTCTATCAATAGTCACACCACACCG
AAATTGTCGTCTGAAGCTTTTAAAACTGGAACGTATCAAAGATTTCTTAT
TGATGGAAGAAGAATTCATTCAGAATCAAGAACGATTGAAGCCACAAGAA
GAAAAACACGAAGTAATATCTTGATGAGTTGAATCTTTGTGTTTTATGAC
AATGTGACCTATTTCACATTTTACACACCTATCTATGAGAGATTAGAACC
TCTAACTCCAAGTGGATTAATTTGTTGataaacattttaatttttcttat
attCGTCAATGAAATCTTGCAATGAagaagcattttgatataagCATAAT
ATCTTCTTTTGTATTTAACAGGAAGAACGCAGCAAGGTAGATGATCTTCG
TGGTACACCAATGTCTGTTGGTTCACTGGAAGAAATCATCGATGACAACC
ACGCTATCGTTTCCACATCTGTTGGCTCAGAACATTACGTCAGCATGTTA
TCATTCGTCGATAAAGATCTTTTAGAACCAGGCTGCTCCGTTTTACTCAA
TCACAAAGTACGTATCTttgtaaaataaaagtaaagtataCCAATGCAAC
GCTTTCACACTAATTGCGGGTCTGAACAGGTTTTAGAGTAAGTGTTCTGT
TTAGAGTTTCAGTGTAATGTGTAAAAGAAAATATCCAGTAAACAAAAGCT
CTAATAGGATATCGGATATACTTTTTCGCTTTGTGAAAATTACTGGGAAA
GCAGAAAAAGTTCGAGAACGTTCGTGTATCCTTTATCCATACTCAATCAA
GGAGCAATTTATTTCAAGTGTTTTTGGAGAATATTTTGTAAAGAGcttga
aaaaaagttacaaatacCGAACTAATACTTCCTATTTGACGTATGGGTTG
ATCATTAATTTCAACTAATGGGCATTTTATCCATTTTTATCCCTCTTTTA
ACTCTTATTTGAAAAGAAGACCATCATGGAAtgaatgtttttgtattttc
taggTTCACGCGGTGATCGGGGTGCTAGGTGACGATACCGACCCCATGGT
GAGCGTCATGAAACTCGACAAAGCACCACAAGAATCGTACGCAGATATCG
GAGGTCTCGATAAACAGATTCAAGAAATTAAGGTTCATTAAACCACAATT
TAACTATTTTGACTCCTATTCAGAATCTTAGTTTGCAGTAAGGTAAACCG
CTTTTTGCCCGTCACAGAAAAGTAATTCAAAAACTAGCGAATATTTCAAG
TAAATTGCCTGCTAAcctttaatttatttttgatatcatttcaatttcat
ctcaatttttcaatacttttctaaatttttagacCTTTTTTATTGTAGAT
CAATATGTCAATAAATTTAATAATCAATttacttttatcattttcttctt
taacaTTTTAGGAATCGGTAGAATTGCCGTTAACACATCCCGAACTTTAT
GAAGAAATGGGGATCAAACCACCCAAAGGAGTCATTCTCTACGGACCCCC
TGGAACAGGTGAAGGATTTTTTTGATTCCTtaatcagattgtgattgata
AGTCTCATACTAGGTGATTCAAAAAAGACTGTGTACGTTTGTCGACCCCC
TGGCGCCAAAGAAATTGTGGAACAAATTTATTTCACAGGGTAGAGTACAG
TCCAAATTTGGAGGCTTAGCTTTTTGGATTTGGCTCAGTAATATTTTTGC
TCTGTTTGGAAAGATCCATTGCGACAATTTTAGAACTGGGATATTATTTG
CCCATTCGAAAGAAGAATTCGATTGAATCATTTTTGAAAGAGGGGTTAAg
ggatttgaaatttataaaaacacttttgcTAGATCACTGGCAGATATCGA
GGGAGCGTATAGTTCTTAGAATAAATAGAGAAATGAACCAAAATATGACT
TAATGCTAACAATATGAATAGTGTCAGAGAGTACTCATTAATTTTCTAat
caaatttaattaatttatttttctaattctAACTGAAAGTTGCTCTTAAA
AAGCTATCAATAAATTATTTCCCTGGCTGTGAGATGTTCAcgaatgtctt
taaaaattttggatagtgTCTCTTATTCGTCTAATCACCATTTTACACGC
CCGTCTGAATTCTGGGTCATTTTGTATATAAATGGCAGGGTTGACAGCAG
AGTTAGATAACGCGCAGAAAACTCCAAACGAAATGACGTAAGGCGTAGCG
TCAAAACCAGGGCTGGGCCGGTTTAAAAGGAAAGCAGCGAAAGTAAGGAT
GTAAATCATGATACCAGGCAGTACAGCAATCAGATAAAAGAGTATCAAAG
TTGTCACTTTTCTCGCCAACTTCCTTTCTCTGTTATGTGTGCGAGCTTTC
TTGCGAGTCCTATCAAAGGCTGTTCTTTTATCTTCCTGACAAGTTTGAGT
TCTCCTATTTATAGATTGCCCATGCTGTTCTATGTTAGATGTCTCTCCTC
TCTTGGTCTTCATATTGTCAGTCGCTCCATTCTTGATGTTTGCTTCTGTT
GTTTGTTTTGTTCCTGGGAACGAGTACGATTTGACCATAACTCTAATTGG
TCCACCCTCTTCATTATCGTGATTTTTGGTCAGGTCTGACTTTTCTATAT
CTTCAGTATTCTTCTTATCTTGAAAATGGCTGAgtttcttttttctgttt
tcacTTCTTTCTTTGTGGAGCTGCGTCTTTGTTTCATTTGATGCATTTTC
TAGATATTGATTTTCGTCCTTTTTCATTTGCTTAAGTGTTCTCTCCAGGC
CGTATTTGGTAGATTTGATGGAATCAGATGAATTATAGGTATTATTCTGA
TGCCTGGTCTTGCCATCAGTATGCATGTTGATGCGTTTTCGGCTGTTCTT
TACAGCTTTCATTACGTAATAATAGCTTGTGCATAAAAGTAAGGTCGGTG
TCACCTGTAATAGTAGCCCATTGAGCACAAAAAGATAAATATTGATCCAC
AAGACAACTGCAAAGATGAAAGCCAGTACCCAGTAGGCTAGGATTATATA
GAAGATCTTGCGATCAGGTAATATCTTCTTGTGCTGAGAAGGTTTGGTTA
TAAGAAGGAAACGGTCATACGCGATGAAGATGATGGATATGCTGGATGAA
CCGAATGTCCAATAGGTGAAACTTATATAAACTCTCTCGACCAAACATTG
CGTTGCTAGGGGACCTGGTGATCTCGACGCATTCTGTAGTAACCAGATTG
CCATAGGGAACGAGATGTAGCCCACCAAACAATCACTTAAAGCCAGTGAG
ATTAAAAACTTGTTGGATTTAGTTCGTTGTGATGGTTGTCTAAGCACTAC
CAAACAAAAGGTATTCCCAAGAGCTGCTATAAGGCATGCGCCAATGAAGA
GGGGTGTTGCCAACGTTCTGAATGTTGTATTTAGGAATATGGAAGGGTTT
AGACAATCCATAGTCGTCATGCAAAATTATTTTCTGTTCCAATGCAGTGT
TTGTTGATGGAGAAGATGCGTCTTTCTTAAGTTCGTCTCTCCTAAAACAT
AAATACGAGCGAATCTACAAAATAAGCCCCCGACGTGCCCTTATATACCA
cccttgaatttctttttccctTTTTGCATTAAGAATCATTTCTTTTGgct
ttcatttctttttcatctCAATTTTTAGTACCTTTTAAAAAAGAATCACA
TTTTAATCACATGCTAAATCATATTTTTTCCTTCCTATATCGAATAGAAG
ATGTTGTGTTTAAAGGATCGGGAATTAAAAAagagttttgaagtttttta
tcaaatagcAAATTGATTTATTTCATTACACGGTGTTGATTTCATCACGG
CCTTCGCCAATATTAGAATATTTAATCCTTTTTTCTCTTAAACCGAGCAG
AACGGttttatcttctttttctttttccaggaaaaacgcTGCTAGCAAAA
GCTGTCGCAAACCAAACATCTGCCACCTTCTTACGTGTTGTCGGCTCCGA
ACTTATACAAAAATATTTGGTAATACTTCCAAACCCCTTTCTCTCTCCTC
TTTTTGTTCGGCTAAATTATTCGCCACTGTAAGTGCTTCAAATGCCATAT
CAGTTCTTAAAATCAATTTGCTACTGGTGTAAAATTTAGTTGCAAGTCAC
CCAATAACTTTCTAAAAGTAACGTGATTACTGTATCATATTGGTTGTTTT
TAGGGTGATGGACCGAAGTTGGTGCGTGAATTATTTCGCGTAGCTGAAGA
ACATTCGCCTTCAATTGTTTTCATCGATGAGATAGACGCGGTCGGCACTA
AAAGGTTTGACCATTCTCGTCTGTTTNTATTTAGGAATATGGAAGGGTTT
AGACAATCCATAGTCGTCATGCAAAATTATTTTCTGTTCCAATGCAGTGT
TTGTTGATGGAGAAGATGCGTCTTTCTTAAGTTCGTCTCTCCTAAAACAT
AAATACGAGCGAATCTACAAAATAAGCCCCCGACGTGCCCTTATATACCA
cccttgaatttctttttccctTTTTGCATTAAGAATCATTTCTTTTGgct
ttcatttctttttcatctCAATTTTTAGTACCTTTTAAAAAAGAATCACA
TTTTAATCAAATGCTAAATCATATTTTTTCCTTCTTATATCGAATAGAAG
ATGTTGTGTTTAAAGGATCGGAAATTAAAAAagagttttgaagtttttta
tcaaatagcAAATTGATTTATTTCATTACACGGTGTTGATTTCATCACGA
CCTTCGCCAATATTAGAATATTTAATCCTTTTTTCTTAAACCGAGCAGAA
CGGttttatcttctttttcttatttccaGGAAAAACGCTGCTAGCAAAAG
CTGTCGCAAACCAAACATCTGCCACCTTCTTACGTGTTGTCGGCTCCGAA
CTTATACAAAAATATTTGGTAATACTTCCAAACCCCTTTCTCTCTCCTCT
TTTTGTTCGGCTAAATTATTCGCCACTGTAANATTTGGTAATACTTCCAA
ACCCCTTTCTCTCTCCTCTTTTTGTTCGGCTAAATTATTCGCCACTGTAA
GTGCTTCAAATGCCATATCAGTTCTTAAAATCAATTTGCTACTGGTGTAA
AATTTAGTTGCAAGTCACCCAATAACTTTCTAAAAGTAACGTGATTACTG
TATCATATTGGTTGTTTTTAGGGTGATGGACCGAAGTTGGTGCGTGAATT
ATTTCGCGTAGCTGAAGAACATTCGCCTTCAATTGTTTTCATCGATGAGA
TAGACGCGGTCGGCACTAAAAGGTTTGATCATTCTCGTCTGTTTTGAGTA
CCGTGGAATGGTTCTCATTCCCAGGGAAACGTCCTTGGCGCATTCCCGGG
ATCTTTCCGCTGTTTTTACGAGTATTCTTGCAGAAATGATTTCTTTGCTG
CATACAATGCGTAGGCAAGACATAACAGCCATGTAGACTGACCGCCCAAC
AAGGTAGACCTCCTTTTATGTATGTCTTTGAAGTTTCAATAATTTTGTCG
GGAATGAGAAGTTTCGTTCTACGATAGGCTTTAGTTTTCAAAAAACCTCA
TCCACTAAGCTCCGATTGTAGAAATCAATTCTCAAAGGACAGTTTTCAGA
TTTGCTTTTTTGACACAtctgtaaaaaaattttaacgtttttcttttCTC
CAGATACGACTCCAATTCTGGAGGTGAACGTGAAATTCAGAGAACTATGT
TGGAATTGTTGAATCAGTTGGATGGGTTTGATGGTCGTGGTGATGTCAAG
GTATTTGAGAAGTATTTCTCAGACCGTTAAAAAACTAAAACTGCAATTTT
TATCTGGTTAATGACAACCTCCCCCTTTATCGTGCGGAGGAAAGAAGCTG
CAGGATggttttaaaatattcaaagcTAAATTTTTTAATATCCAAACCGT
TACTTCAATTTCATACATGTTTTCCATAGGTTATAATGGCAACCAATCGA
ATAGATTCATTGGACCCTGCTCTGATTCGACCAGGTAAACtttaaatgca
aaaaaatcttGTGTTGCTTTATGATTTTTAATTTAGTCTcttcattctat
tttattttatttgtcatATTTGGAAGACTGATCATGGGAAAGATCACAAA
TTCTTTCATTTGAACACCTACCAAAGTTTATCCAGTACTCTGTAGTCTAC
ATAATgcctttttcatttcatttctttgCATTGCAGGCCGTATCGACAGG
AAAATTGAATTCCCTCTTCCCGATCAAAAAACTAAACGAAGAATATTCGG
TATTCACACCAATAGAATGACTTTATCCAAAGATGTCGATTTAGAAGAAT
ATATTTTAGCCAAAGATGATTTATCCGGAGCTGATATCAAGGTGCGTGAA
ATTACAACCAACAATGTCTCTAACTCTGTTTATAGGGTAGCGTACGTCCA
AAATTTAGTCTCGAGATAAAAGAAGTTACTAACTGTTCACAGAGCTCACT
GGGTATTAGAAACGAAAGATTTTCACCGCTTAATATAGTGATATCCCTAG
CTAAGTGGGTTGGTAGGACCTTTCGAAAATTCACTAAAGGTAGGAAAAAT
AAAGTTTGACCTATAAAGGGAGATGTAAACAACAGAGAGGGGGATTGCAA
AGGGATGATGGGTAGAATTTTTAACAGGGAAATATGAAACAATAATATGC
CACCAAATTTCTAGTTAGGATTAGGAAATAACTTGTACTGAGGTAATAGT
TTGTAAaatcaaggacacttgtatagcgaagctggacaaatttattttct
ttgaaccatGTGTGTCGTCGCAACATAGATATCGTCTTTCTTTGACCAAT
AAGAGGTTGTTCCTCatgttttttcaaccaatcagaaatacttTTTAGTA
AAAGTACTTCACAATGAAAAACCATCGTCAGACAGATGGATTTTGCATGG
AAAGTTTGTTGCTAaagatattttatgaaattgcTTTGACATGATAGCAA
TAACAAGAAAACAACAATCGTACAATTACTTTATAATGAGTTTTATCACA
CCTTTATACAATcaaaaaaattacgaaaaaaaaaatttccttctcgTGAA
TGATAGcaataacaagaaaacaagaatcgaacaatttaagaaaagagaaa
atttccTTCTCGTGAATGAGATTTTGCTTGTAGTATGATGCTCGACATTT
TGCTATAGCCATTACGTATAAGATTTGGGTAATTTGGTGaaagttTAGGA
GAGTTTAGgctattttttactcattttctctTCGTCATTTCAATTTAAAC
CTTCTaagatttgtttaaaatatttgttacacCTTGAAATAACTTACGTC
ATTTACAATTTAACTTTTTCGAAGGATCCTCTTTTCAGGGTTTTCGGCCT
ATAAATTGACCAATAATATTCTCAACCGCTGACCAGGGTTCGCGGATTCT
TGGTAAAATTACTTTTCTTTGGGGGTagagattttttgaaaagggaTTTT
TAGTGAATAAAGGTGTAGAAACTCGTCTGCACACTGCTTTGGTATTTACG
ATGTTATATTTTTCCTTCGCAGGCTATTTGTACGGAAGCCGGTCTTCTCG
CTTTACGAGAGCGAAGAATGAAGGTTACGaatgaagatttcaaaaaagcg
AAGGAGAACGTCTTGTATCGAAAACAAGAGGGTACTCCAGAAGGCTTGTA
CCTTTAATACAATCGTCgcccttttttgattttatttctaaattgtattt
aaattttaggttttttggacctacctggaggtcctataaattaacctttg
ttcgtccgtccgtctgtccgtccgtccgtctgttaccagcttttctcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020545XLOC_020545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035217-exon-sc0001275-1491911889:52608..52808TCONS_00035217-exon-sc0001275-1491911889:52608..52808Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:52608..52808TCONS_00035217-exon-sc0001275-1510915933:52608..52808Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:52608..52808TCONS_00035217-exon-sc0001275-1575043694:52608..52808Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:59578..59628TCONS_00035217-exon-sc0001275-1491911889:59578..59628Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:59578..59628TCONS_00035217-exon-sc0001275-1510915933:59578..59628Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:59578..59628TCONS_00035217-exon-sc0001275-1575043694:59578..59628Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:60629..60725TCONS_00035217-exon-sc0001275-1491911889:60629..60725Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:60629..60725TCONS_00035217-exon-sc0001275-1510915933:60629..60725Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:60629..60725TCONS_00035217-exon-sc0001275-1575043694:60629..60725Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:60945..61069TCONS_00035217-exon-sc0001275-1491911889:60945..61069Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:60945..61069TCONS_00035217-exon-sc0001275-1510915933:60945..61069Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:60945..61069TCONS_00035217-exon-sc0001275-1575043694:60945..61069Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:61279..61464TCONS_00035217-exon-sc0001275-1491911889:61279..61464Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:61279..61464TCONS_00035217-exon-sc0001275-1510915933:61279..61464Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:61279..61464TCONS_00035217-exon-sc0001275-1575043694:61279..61464Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:61911..62039TCONS_00035217-exon-sc0001275-1491911889:61911..62039Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:61911..62039TCONS_00035217-exon-sc0001275-1510915933:61911..62039Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:61911..62039TCONS_00035217-exon-sc0001275-1575043694:61911..62039Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:62319..62415TCONS_00035217-exon-sc0001275-1491911889:62319..62415Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:62319..62415TCONS_00035217-exon-sc0001275-1510915933:62319..62415Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:62319..62415TCONS_00035217-exon-sc0001275-1575043694:62319..62415Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:64788..64876TCONS_00035217-exon-sc0001275-1491911889:64788..64876Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:64788..64876TCONS_00035217-exon-sc0001275-1510915933:64788..64876Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:64788..64876TCONS_00035217-exon-sc0001275-1575043694:64788..64876Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:65061..65109TCONS_00035217-exon-sc0001275-1491911889:65061..65109Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:65061..65109TCONS_00035217-exon-sc0001275-1510915933:65061..65109Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:65061..65109TCONS_00035217-exon-sc0001275-1575043694:65061..65109Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:66078..66129TCONS_00035217-exon-sc0001275-1491911889:66078..66129Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:66078..66129TCONS_00035217-exon-sc0001275-1510915933:66078..66129Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:66078..66129TCONS_00035217-exon-sc0001275-1575043694:66078..66129Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:66511..66607TCONS_00035217-exon-sc0001275-1491911889:66511..66607Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:66511..66607TCONS_00035217-exon-sc0001275-1510915933:66511..66607Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:66511..66607TCONS_00035217-exon-sc0001275-1575043694:66511..66607Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:66787..66841TCONS_00035217-exon-sc0001275-1491911889:66787..66841Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:66787..66841TCONS_00035217-exon-sc0001275-1510915933:66787..66841Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:66787..66841TCONS_00035217-exon-sc0001275-1575043694:66787..66841Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:67044..67198TCONS_00035217-exon-sc0001275-1491911889:67044..67198Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:67044..67198TCONS_00035217-exon-sc0001275-1510915933:67044..67198Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:67044..67198TCONS_00035217-exon-sc0001275-1575043694:67044..67198Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1491911889:68380..68657TCONS_00035217-exon-sc0001275-1491911889:68380..68657Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1510915933:68380..68657TCONS_00035217-exon-sc0001275-1510915933:68380..68657Clytia hemisphaericaexon
TCONS_00035217-exon-sc0001275-1575043694:68380..68657TCONS_00035217-exon-sc0001275-1575043694:68380..68657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001275supercontigsc0001275:52608..68657 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
148.766	156.237	228.932	225.868	186.028	142.591	134.237	142.312	93.4538	100.342	91.854	75.9826	74.1346	79.8444	75.7331	91.5452	96.7257	93.1102	36.131	38.5888	73.6756	71.1805	80.6031	76.2911	120.604	112.584	87.4104	82.4025	71.6217	64.2889
Blast
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BLAST of TCONS_00035217 vs. Swiss-Prot (Human)
Match: PRS4 (26S proteasome regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 373/416 (89.66%), Postives = 402/416 (96.63%), Query Frame = 1 
Query:  268 YEPPIPTRVGKKAKKNRGPDAANKLPVVTPHRNCRLKLLKLERIKDFLLMEEEFIQNQERLKPQEEKHEEERSKVDDLRGTPMSVGSLEEIIDDNHAIVSTSVGSEHYVSMLSFVDKDLLEPGCSVLLNHKVHAVIGVLGDDTDPMVSVMKLDKAPQESYADIGGLDKQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHSPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDGRGDVKVIMATNRIDSLDPALIRPGRIDRKIEFPLPDQKTKRRIFGIHTNRMTLSKDVDLEEYILAKDDLSGADIKAICTEAGLLALRERRMKVTNEDFKKAKENVLYRKQEGTPEGLYL 1515
            YEPP+PTRVGKK KK +GPDAA+KLP+VTPH  CRLKLLKLERIKD+LLMEEEFI+NQE++KP EEK EEERSKVDDLRGTPMSVG+LEEIIDDNHAIVSTSVGSEHYVS+LSFVDKDLLEPGCSVLLNHKVHAVIGVL DDTDP+V+VMK++KAPQE+YADIGGLD QIQEIKESVELPLTHPE YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH+PSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFD RGDVKVIMATNRI++LDPALIRPGRIDRKIEFPLPD+KTK+RIF IHT+RMTL+ DV L++ I+AKDDLSGADIKAICTEAGL+ALRERRMKVTNEDFKK+KENVLY+KQEGTPEGLYL
Sbjct:   25 YEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
The following BLAST results are available for this feature:
BLAST of TCONS_00035217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS40.000e+089.6626S proteasome regulatory subunit 4 OS=Homo sapien... [more]
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