TCONS_00035215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035215
Unique NameTCONS_00035215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035215 ID=TCONS_00035215|Name=TCONS_00035215|organism=Clytia hemisphaerica|type=transcript|length=1674bp
CGGGCGGGCACATGCGTGGAATGCGTGAAGCATCAAGACCTGTTTGgggt
ttaatttttttgctgactcaTGTAAATTTAGAGGCTATTTCAAAAGGACG
GCGTAGCCGTGGTGGTTAAACTcacaactttttcaaattttgtggtTGAT
ACTGTCCTGTCAATCTCTACTCTAGCAACTTCACTAAAGTACAAAGCGCA
TCGATTAAGATATGGGGCAAAACCAATCAGGACCTGGTGGTGGCCGTGGC
AAAAAAGATGACAAGGACAAGAAGAAGAAATATGAACCACCTATTCCAAC
ACGTGTTGgcaaaaaagctaaaaagaaTCGAGGGCCAGATGCTGCTAATA
AATTACCTGTTGTCACACCACACCGAAATTGTCGTCTGAAGCTTTTAAAA
CTGGAACGTATCAAAGATTTCTTATTGATGGAAGAAGAATTCATTCAGAA
TCAAGAACGATTGAAGCCACAAGAAGAAAAACACGAAGAAGAACGCAGCA
AGGTAGATGATCTTCGTGGTACACCAATGTCTGTTGGTTCACTGGAAGAA
ATCATCGATGACAACCACGCTATCGTTTCCACATCTGTTGGCTCAGAACA
TTACGTCAGCATGTTATCATTCGTCGATAAAGATCTTTTAGAACCAGGCT
GCTCCGTTTTACTCAATCACAAAgTTCACGCGGTGATCGGGGTGCTAGGT
GACGATACCGACCCCATGGTGAGCGTCATGAAACTCGACAAAGCACCACA
AGAATCGTACGCAGATATCGGAGGTCTCGATAAACAGATTCAAGAAATTA
AGGAATCGGTAGAATTGCCGTTAACACATCCCGAACTTTATGAAGAAATG
GGGATCAAACCACCCAAAGGAGTCATTCTCTACGGACCCCCTGGAACAGG
AAAAACGCTGCTAGCAAAAGCTGTCGCAAACCAAACATCTGCCACCTTCT
TACGTGTTGTCGGCTCCGAACTTATACAAAAATATTTGGGTGATGGACCG
AAGTTGGTGCGTGAATTATTTCGCGTAGCTGAAGAACATTCGCCTTCAAT
TGTTTTCATCGATGAGATAGACGCGGTCGGCACTAAAAGATACGACTCCA
ATTCTGGAGGTGAACGTGAAATTCAGAGAACTATGTTGGAATTGTTGAAT
CAGTTGGATGGGTTTGATGGTCGTGGTGATGTCAAGGTTATAATGGCAAC
CAATCGAATAGATTCATTGGACCCTGCTCTGATTCGACCAGGCCGTATCG
ACAGGAAAATTGAATTCCCTCTTCCCGATCAAAAAACTAAACGAAGAATA
TTCGGTATTCACACCAATAGAATGACTTTATCCAAAGATGTCGATTTAGA
AGAATATATTTTAGCCAAAGATGATTTATCCGGAGCTGATATCAAGGCTA
TTTGTACGGAAGCCGGTCTTCTCGCTTTACGAGAGCGAAGAATGAAGGTT
ACGaatgaagatttcaaaaaagcgAAGGAGAACGTCTTGTATCGAAAACA
AGAGGGTACTCCAGAAGGCTTGTACCTTTAATACAATCGTCgcccttttt
tgattttatttctaaattgtatttaaattttaggttttttggacctacct
ggaggtcctataaattaacctttgttcgtccgtccgtctgtccgtccgtc
cgtctgttaccagcttttctcgag
Run BLAST on NCBI

transcript from alignment at sc0001275:52595..68657+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035215 ID=TCONS_00035215|Name=TCONS_00035215|organism=Clytia hemisphaerica|type=transcript|length=16063bp|location=Sequence derived from alignment at sc0001275:52595..68657+ (Clytia hemisphaerica)
CGGGCGGGCACATGCGTGGAATGCGTGAAGCATCAAGACCTGTTTGgggt
ttaatttttttgctgactcaTGTAAATTTAGAGGCTATTTCAAAAGGACG
GCGTAGCCGTGGTGGTTAAACTcacaactttttcaaattttgtggtTGAT
ACTGTCCTGTCAATCTCTACTCTAGCAACTTCACTAAAGTACAAAGCGCA
TCGATTAAGATATGGTAAGAttactctttttttatttgcttgggctcaaa
gggccattccagaatttgccTGTAACAGGGGGGCGAACGACACAGGATTT
ttgagggcaaaagttttcaccaaaattcgaaatttccacaaggcaataca
cctttcccgtaattcaaagttctcagaaatggcccgggaaaatgtgcggt
ccaccgttgtgtataaaattgtttgggagttaaaaaacgcgtttttgcct
gcgagggcggggtttagggaaagtgggatttCAGCATCTAACTTTTGACA
GCcaatcttcttttggcaaaatattttcagggtggtataatctcaaaaaa
ccaactttccctaaggtaGGGTGCGCACttgtcgggattttttgcgcgga
acgagggagaatttacaaaaatgaacttcaatgcattagtacttaccttt
atgctttaaatcatccaaatctattcattctttttttaaatcaatcagga
attatcagggaaacaagtaaaaaaaactgtatccaggtatctattttctt
tccaaagtggaagatattcatgttttttgacgtcaaggtgaaaacgcgat
cagtgaaaattccaagcacttttctgTGGCCGTTATACGGCCAgaaaact
caattttaaattgagttttgaaactcaatatttgaagaaaagaatttttt
tcagtcataaaatgtcgaaaaaataTTGACAGTAAACCTTATAAACAATA
GTCAAAGTTATTTACTCTATAATCAAAGGTAAGATCAATTTCTCTCATTC
TTTATATCTTTCAacaatatattattttttcttctctctttGTGTGTCTC
TTGCCATTCTTTTGacgaaatcaacatcaaaacattcgaatcgaaagctc
attagaaaaatatcaaaacatttgtTTTTTAAGGACCATTCTTTTTATTG
TTACCtacagttttatttttttattctattgtAGAGTAGAATTATTAACC
GTTTTATTGATTTACTAAGAAGGCCGCTAGAAATATGTCCCATTTTCTGA
TCAATTTTTCctttatattcacttttttaaaCTCCAGATTTGTTAGAATA
ATATCGAGTGGAAAGTACATTCCACAATAGACaagcagctgaggtcacaa
aaaaattggacggggtGCAAACAATCTcaaaccacttttaattgaaaata
tacaacctaaatatctagaaaccatcaaccggagttgttgaaattactta
ccggacgtgtccggtaatattttagtacctgatgacgtcatgcagcgtgc
ccataggctaactgaaaaaattttgagaaccaacttagacatattatata
ccgatcgaagcgttttttaacgtagattaagaaaatggtcagtaaccata
tctgaaaattttgctataaaaagttaGAACGCTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTT
CAGAAAGGTCGtatctattgaaaacaactgtttaaagtttgctcgcaaac
tttgtagctactgcacttttttatgtgacctcagctgcctgactaCGTTG
TGCTTgctccttttttattttgaaatcttactttaataaataaagctttg
tttcttttgttcttgaagcatttcttttgttcttcaagcatttcttttgt
tcttcaaCCATTTCTTTCCATCAGGGGCCGTAAGCTTTAAAAAAGACCTG
TTTTAACCAGTCTAGAagggctaattttcaaaaatgttctcccgtcggcg
ccaaccatcgtggcgcctccttagacactaatTACACTAAACTATGGCCC
TATCACCTAACACCTACcactttcaaagtggagccgcGGCCCCTATCCAT
GCATGGTTAAAGTGTATTCTATTATAGTTACTAGTAAACGATAATTTTGT
TTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGATATCATTAATAAACTCTTAACTAGGAGTCC
GTTAGGGGGGGGGTCTCAGATAATAGCAATGGCATGgctgaaactcaatt
tctagatCAGAAAAACGGCCAGTgggaaaagtgcttggaattttgcctgg
cgatttagcgctgaccatTCTAAAACAGAAtcaaataacatgaaaaccag
aaaatgattcttcaatgggaatcaaaactataaagtgcacttacaaacat
caatttgtcagatctaacaaaatttataacggcactgtcatcattgacaa
taaaacgaacaatattctgtcaagagccttgtaaacattccaacaacttc
catcgaaatgagctatcacagctcagtctaccatttttagcgcagtccaa
ggattgagccgagaactctcacagagcgcccgagctcccgaaaaacttca
atctgtcaatcattttctcaagcataGAGTACGCaaagcaattctagctt
tacgatagtgccgcggatcatcaatggatagtattaaATTATCATTACtg
tatccctttattttcattcatagaacttttgcaaaaaaaggaaaaataga
aaagttgtattttttactgctctattcacatactgaatttgaaagatctt
ctatgtggcgtttttttgcaaacttcaAAAAAattgatttttgtcccgcc
tttgcgggattttggctcaagtgcttgagtgcagcatagggtacaaagtc
caaatatgcgtttcccgtaatttttgtatgaagagttaggtctacactgt
caaAGATAagcacaagtgtttcaaccggaaacgcaatcgaatctcaatcg
aacgtcaaaattctgggtaatattcgattggttcgattgttgttcgactg
gttcgattgtcgattccgttcgattgagatcgtttggctttattcttgca
gcttcccaacatccaagctctcaaatatcacaagccgaatgagagtactt
tcgatttcccgtagaaattatgcgatgaacaatccgggggtcaatgaatc
gatgatcaaacgcaattgaacgcaatcgaagttcaatcgaacgcaatcaa
atatcaatctaatctgaaaattgcggtaatattcgattgagattcgattg
cgttcgacaatcgaatttcaatcggtcgattgtgttcgatttggttcgac
tggttcgatcgtcgattccgttcgattgagatcgtctgggcattatcaat
tacttaggtattagcttttctcaagattggctctttcattctttatgatt
ttttgcacaaagatctataactataaaccctggaatgtgacggagcctga
ttttcgaaaaaaaatgtttttgggcaaattNcacaaagatgcataactat
aaaccctggaatgtgacggagcctgattttcgatgaaaaaaatgtttttg
ggcaaatttgggccaaaaaacggcaatattggatcattgtttttttcaga
ttttttttgcatgaaagtagataaaagatggctcaagcagattttttcag
cagaatttttcagctcaaaaaacgcatctttaattataagaatcactatt
aatataaagcatacatcaatgttcttagccaaattactaaattttttgat
gagatagatgttttttttgctcacgaagtcttcaatatgaaagaatattt
caagagtatgaaattttggtttttaaacgtttttttataagaaacaaaca
actaattttaatagatcgtcactatttgtgttctgaatgattgtttaatg
gtcatgctcatgtagatatcaattatatgtgttaaatgcataaccaggta
ggtccataaaagtatcacttgtttaaacacttttcagctttttaaaTGAA
GAGAATCTCTAAATAGGttcattttattttgtacatttgaaaagtgcagg
tattttctcctttgttacgagtgattaatcgttaattgcacgacaaaaca
tacgattccgaggtaatcgtcagtaaataatcattagtaaatcatagttt
tgNTCACCACCCGGCTAActtgaaaatttatattttgctAGTAGAATTAA
TTTATAATTGCTATgtaattagtactagtaatcgtatggtttggagtgca
attaacgattaatcacgagtaacaaacgacaaaacatacgattccgaggt
aatcgtcataatataaacattcgaaaacctcctttttttcttttgtgttt
aaaaagaaaacactgcagtgtaatttttctttgttttcaattaaaagaag
ctattgtaacgtaaaatgtctttgttttttattatatagtaaaaaaaaag
tctctggagagaaaagaataagaggcccccgccgaagagtgcaaaaagtg
gtaatagtgcaattaacgattaattgcactcctctaaaccaatcagattc
gagtaattttgcacggctgacgattagtACTANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNtaattttgcacggctgacgattaccaCTAAAATTGACCA
CAAACTGACTGAAAAAAAGAGtagaaaaattgataaatcaCATGACTTTA
GTTTCTTCATGGGGGTTGGTTAAATCCGTtcatttttcaagtttcaatta
aaatttattctcaacttcagttgagttagaatctgagaatgtgtgtctgt
gtgtgtgtctgtgtgtctgtgtgtatgtcccaaaactttggggcagcctg
gagacttcaaaaattgttcgatttgggtgaaatttagcacacttgttcct
tgggtgaatatctgggggtgtttttttcatttttcaaaaattttgatttt
tggggtctggggacgagttttcgccaaaacgaggctaaaactttggggta
gcctggagacttcaaaaattgttcgatttggctgaaattttgcacacttg
ctccttgggtgaatatctgggggtgtttttttcatttttcaaaaattttg
atttttggggcctggggacgagtttttcgccaaaacgaggctNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNaacgagtttttcgccaaaacgaggctaaaactttggggcagcc
tggagacttcaaaaattgttcgatttggctaaaattttgcacacttgttN
NNNNNNNNNNNNNNNNCAATcctggccataatatttgagacaaaagggaa
attcccacgaaatcttataaccacaagtattttggaagcgctctaaatta
ggttagacgaatagagttttaactctgagttttaacattagacttaagac
ttagaatctgaggatccaaaagtcccagaatggtccaacagggctcagaa
tatagcctggaagtcaattaaccccacccaaatcgaaatactcgaataaa
tttatcaattagcccaaaaacgactttctcgcccgaattccaaattttga
aaaacgaggaaataagctaaattctcaatatattttggcccGGATTGTGG
GGgcgctttttgcatttttcaaaaatttagatttttggggcctagggacg
agttttttgccaaaacgaggctaaagctttgaagcagcctacaggggtct
acaattgggcctatggataatttgaagccactgaagttgagcccagtgcg
ttgcgcacgttcgactattgcTAATTCCTAAGCGTCAAAATAAAACCTTG
TGAATTAGGCTACATGTACTTTTAGGCCTGTCTCCACTTGCCCGCACATC
AATTGCAATTTTTGACTTCAATTCTTTAAgcttggagaaaaaaaaacaaa
gcgtACTCAACTGTTACATCAGAATGGACCAAttgagttgcttcattttt
cttttgaccaaagCGCAGACGCTTTTCTTGAAAAGAAGTGATCGTAGTGC
GCGTTGTGGAGACCAGCCTTAacgaaaatcaaatttaaattttttaggta
aaagataactttttcatttatttttggtATTAGGGGCAAAACCAATCAGG
ACCTGGTGGTGGCCGTGGCAAAAAAGATGACAAGGTAAGGatttctcata
tttttcatatacTTAAGATTGCATTTTACTATATCATTTGTCTAATTACA
CATTATCATTTTCTCTCATTGTACAACAATCTGGTGATAAAGCTGACACC
TACTTAAAAGTTATCAAACCTTCAGGTTTTAGGAGTGCTGATATTCCCTT
TTGGCCTTAAACCTGCTtaaaccctattcatactaggcttttaggggcgg
ttcagagctaagggggagggggagcttttcctgtaccaccccttaacttt
tgatctagttggtctttttggataaaatttggcacacaagatccttgtta
cacaaggtaacttttgacaaaaatttttttttatgacatCACTCATCAta
cccaaagtgagcaaaaaccgaagatttcctttgttcttataaatagctaa
tgtattctaacaaaggctttagaaaaaagttgagtttaaaatgcttattt
tgtcctaaatattcaataaattacggtttaaacgatatatttgacattaa
caataattttgtattggaaaagtgtcaatttttgcgACATCTTAcggtca
gaaatgtcatcatgctcataGTGTGAAagtttttaggtttaaaatttttt
ttattttgaagctaaataaaagttagaaatttacagaaaatttcatggca
aaagctctattatttcaggtactattaccaataatttgacctcccaacag
aaacagccccctcctaggacgaatagggttaagattATTTGATTATTTAG
GAACTATCTGTATTTAAGAATATCATGCAAACCTTAAAAGATGTTGAGTC
TTAGAAcgctcttattttcactattttctgagtatttttatgtaatttct
tagaaattgggtgttttcgagCCTACAAAGCcttaatgtttttaacttgt
tctttaatattttctttaacgtCATAGCCTTACGtacttatatagtttgt
tcttataaaaaacgtaagTCTTTTACTTAATTAGGACAAGAAGAAGAAAT
ATGAACCACCTATTCCAACACGTGTTGgcaaaaaagctaaaaagaaTCGA
GGGCCAGATGCTGCTAATAAATTACCTGTTGGTATGGAAAATGCTATATT
AATTGCTACTTCATACTTCCAGTAATAATTGCAATTGCTCTCAAATTTTG
TGCCTCAATTTCGGTTATCACTTTTAACCCATACCCAACTAATTATACAA
AGTATTGGAAATGGGCATCAAGTGATTTCATGATATTAACTATGGGCTGC
TTCTAATATTTACCTACTGTAGTATGATTATTTTTGTATTCTATCAATAG
TCACACCACACCGAAATTGTCGTCTGAAGCTTTTAAAACTGGAACGTATC
AAAGATTTCTTATTGATGGAAGAAGAATTCATTCAGAATCAAGAACGATT
GAAGCCACAAGAAGAAAAACACGAAGTAATATCTTGATGAGTTGAATCTT
TGTGTTTTATGACAATGTGACCTATTTCACATTTTACACACCTATCTATG
AGAGATTAGAACCTCTAACTCCAAGTGGATTAATTTGTTGataaacattt
taatttttcttatattCGTCAATGAAATCTTGCAATGAagaagcattttg
atataagCATAATATCTTCTTTTGTATTTAACAGGAAGAACGCAGCAAGG
TAGATGATCTTCGTGGTACACCAATGTCTGTTGGTTCACTGGAAGAAATC
ATCGATGACAACCACGCTATCGTTTCCACATCTGTTGGCTCAGAACATTA
CGTCAGCATGTTATCATTCGTCGATAAAGATCTTTTAGAACCAGGCTGCT
CCGTTTTACTCAATCACAAAGTACGTATCTttgtaaaataaaagtaaagt
ataCCAATGCAACGCTTTCACACTAATTGCGGGTCTGAACAGGTTTTAGA
GTAAGTGTTCTGTTTAGAGTTTCAGTGTAATGTGTAAAAGAAAATATCCA
GTAAACAAAAGCTCTAATAGGATATCGGATATACTTTTTCGCTTTGTGAA
AATTACTGGGAAAGCAGAAAAAGTTCGAGAACGTTCGTGTATCCTTTATC
CATACTCAATCAAGGAGCAATTTATTTCAAGTGTTTTTGGAGAATATTTT
GTAAAGAGcttgaaaaaaagttacaaatacCGAACTAATACTTCCTATTT
GACGTATGGGTTGATCATTAATTTCAACTAATGGGCATTTTATCCATTTT
TATCCCTCTTTTAACTCTTATTTGAAAAGAAGACCATCATGGAAtgaatg
tttttgtattttctaggTTCACGCGGTGATCGGGGTGCTAGGTGACGATA
CCGACCCCATGGTGAGCGTCATGAAACTCGACAAAGCACCACAAGAATCG
TACGCAGATATCGGAGGTCTCGATAAACAGATTCAAGAAATTAAGGTTCA
TTAAACCACAATTTAACTATTTTGACTCCTATTCAGAATCTTAGTTTGCA
GTAAGGTAAACCGCTTTTTGCCCGTCACAGAAAAGTAATTCAAAAACTAG
CGAATATTTCAAGTAAATTGCCTGCTAAcctttaatttatttttgatatc
atttcaatttcatctcaatttttcaatacttttctaaatttttagacCTT
TTTTATTGTAGATCAATATGTCAATAAATTTAATAATCAATttactttta
tcattttcttctttaacaTTTTAGGAATCGGTAGAATTGCCGTTAACACA
TCCCGAACTTTATGAAGAAATGGGGATCAAACCACCCAAAGGAGTCATTC
TCTACGGACCCCCTGGAACAGGTGAAGGATTTTTTTGATTCCTtaatcag
attgtgattgataAGTCTCATACTAGGTGATTCAAAAAAGACTGTGTACG
TTTGTCGACCCCCTGGCGCCAAAGAAATTGTGGAACAAATTTATTTCACA
GGGTAGAGTACAGTCCAAATTTGGAGGCTTAGCTTTTTGGATTTGGCTCA
GTAATATTTTTGCTCTGTTTGGAAAGATCCATTGCGACAATTTTAGAACT
GGGATATTATTTGCCCATTCGAAAGAAGAATTCGATTGAATCATTTTTGA
AAGAGGGGTTAAgggatttgaaatttataaaaacacttttgcTAGATCAC
TGGCAGATATCGAGGGAGCGTATAGTTCTTAGAATAAATAGAGAAATGAA
CCAAAATATGACTTAATGCTAACAATATGAATAGTGTCAGAGAGTACTCA
TTAATTTTCTAatcaaatttaattaatttatttttctaattctAACTGAA
AGTTGCTCTTAAAAAGCTATCAATAAATTATTTCCCTGGCTGTGAGATGT
TCAcgaatgtctttaaaaattttggatagtgTCTCTTATTCGTCTAATCA
CCATTTTACACGCCCGTCTGAATTCTGGGTCATTTTGTATATAAATGGCA
GGGTTGACAGCAGAGTTAGATAACGCGCAGAAAACTCCAAACGAAATGAC
GTAAGGCGTAGCGTCAAAACCAGGGCTGGGCCGGTTTAAAAGGAAAGCAG
CGAAAGTAAGGATGTAAATCATGATACCAGGCAGTACAGCAATCAGATAA
AAGAGTATCAAAGTTGTCACTTTTCTCGCCAACTTCCTTTCTCTGTTATG
TGTGCGAGCTTTCTTGCGAGTCCTATCAAAGGCTGTTCTTTTATCTTCCT
GACAAGTTTGAGTTCTCCTATTTATAGATTGCCCATGCTGTTCTATGTTA
GATGTCTCTCCTCTCTTGGTCTTCATATTGTCAGTCGCTCCATTCTTGAT
GTTTGCTTCTGTTGTTTGTTTTGTTCCTGGGAACGAGTACGATTTGACCA
TAACTCTAATTGGTCCACCCTCTTCATTATCGTGATTTTTGGTCAGGTCT
GACTTTTCTATATCTTCAGTATTCTTCTTATCTTGAAAATGGCTGAgttt
cttttttctgttttcacTTCTTTCTTTGTGGAGCTGCGTCTTTGTTTCAT
TTGATGCATTTTCTAGATATTGATTTTCGTCCTTTTTCATTTGCTTAAGT
GTTCTCTCCAGGCCGTATTTGGTAGATTTGATGGAATCAGATGAATTATA
GGTATTATTCTGATGCCTGGTCTTGCCATCAGTATGCATGTTGATGCGTT
TTCGGCTGTTCTTTACAGCTTTCATTACGTAATAATAGCTTGTGCATAAA
AGTAAGGTCGGTGTCACCTGTAATAGTAGCCCATTGAGCACAAAAAGATA
AATATTGATCCACAAGACAACTGCAAAGATGAAAGCCAGTACCCAGTAGG
CTAGGATTATATAGAAGATCTTGCGATCAGGTAATATCTTCTTGTGCTGA
GAAGGTTTGGTTATAAGAAGGAAACGGTCATACGCGATGAAGATGATGGA
TATGCTGGATGAACCGAATGTCCAATAGGTGAAACTTATATAAACTCTCT
CGACCAAACATTGCGTTGCTAGGGGACCTGGTGATCTCGACGCATTCTGT
AGTAACCAGATTGCCATAGGGAACGAGATGTAGCCCACCAAACAATCACT
TAAAGCCAGTGAGATTAAAAACTTGTTGGATTTAGTTCGTTGTGATGGTT
GTCTAAGCACTACCAAACAAAAGGTATTCCCAAGAGCTGCTATAAGGCAT
GCGCCAATGAAGAGGGGTGTTGCCAACGTTCTGAATGTTGTATTTAGGAA
TATGGAAGGGTTTAGACAATCCATAGTCGTCATGCAAAATTATTTTCTGT
TCCAATGCAGTGTTTGTTGATGGAGAAGATGCGTCTTTCTTAAGTTCGTC
TCTCCTAAAACATAAATACGAGCGAATCTACAAAATAAGCCCCCGACGTG
CCCTTATATACCAcccttgaatttctttttccctTTTTGCATTAAGAATC
ATTTCTTTTGgctttcatttctttttcatctCAATTTTTAGTACCTTTTA
AAAAAGAATCACATTTTAATCACATGCTAAATCATATTTTTTCCTTCCTA
TATCGAATAGAAGATGTTGTGTTTAAAGGATCGGGAATTAAAAAagagtt
ttgaagttttttatcaaatagcAAATTGATTTATTTCATTACACGGTGTT
GATTTCATCACGGCCTTCGCCAATATTAGAATATTTAATCCTTTTTTCTC
TTAAACCGAGCAGAACGGttttatcttctttttctttttccaggaaaaac
gcTGCTAGCAAAAGCTGTCGCAAACCAAACATCTGCCACCTTCTTACGTG
TTGTCGGCTCCGAACTTATACAAAAATATTTGGTAATACTTCCAAACCCC
TTTCTCTCTCCTCTTTTTGTTCGGCTAAATTATTCGCCACTGTAAGTGCT
TCAAATGCCATATCAGTTCTTAAAATCAATTTGCTACTGGTGTAAAATTT
AGTTGCAAGTCACCCAATAACTTTCTAAAAGTAACGTGATTACTGTATCA
TATTGGTTGTTTTTAGGGTGATGGACCGAAGTTGGTGCGTGAATTATTTC
GCGTAGCTGAAGAACATTCGCCTTCAATTGTTTTCATCGATGAGATAGAC
GCGGTCGGCACTAAAAGGTTTGACCATTCTCGTCTGTTTNTATTTAGGAA
TATGGAAGGGTTTAGACAATCCATAGTCGTCATGCAAAATTATTTTCTGT
TCCAATGCAGTGTTTGTTGATGGAGAAGATGCGTCTTTCTTAAGTTCGTC
TCTCCTAAAACATAAATACGAGCGAATCTACAAAATAAGCCCCCGACGTG
CCCTTATATACCAcccttgaatttctttttccctTTTTGCATTAAGAATC
ATTTCTTTTGgctttcatttctttttcatctCAATTTTTAGTACCTTTTA
AAAAAGAATCACATTTTAATCAAATGCTAAATCATATTTTTTCCTTCTTA
TATCGAATAGAAGATGTTGTGTTTAAAGGATCGGAAATTAAAAAagagtt
ttgaagttttttatcaaatagcAAATTGATTTATTTCATTACACGGTGTT
GATTTCATCACGACCTTCGCCAATATTAGAATATTTAATCCTTTTTTCTT
AAACCGAGCAGAACGGttttatcttctttttcttatttccaGGAAAAACG
CTGCTAGCAAAAGCTGTCGCAAACCAAACATCTGCCACCTTCTTACGTGT
TGTCGGCTCCGAACTTATACAAAAATATTTGGTAATACTTCCAAACCCCT
TTCTCTCTCCTCTTTTTGTTCGGCTAAATTATTCGCCACTGTAANATTTG
GTAATACTTCCAAACCCCTTTCTCTCTCCTCTTTTTGTTCGGCTAAATTA
TTCGCCACTGTAAGTGCTTCAAATGCCATATCAGTTCTTAAAATCAATTT
GCTACTGGTGTAAAATTTAGTTGCAAGTCACCCAATAACTTTCTAAAAGT
AACGTGATTACTGTATCATATTGGTTGTTTTTAGGGTGATGGACCGAAGT
TGGTGCGTGAATTATTTCGCGTAGCTGAAGAACATTCGCCTTCAATTGTT
TTCATCGATGAGATAGACGCGGTCGGCACTAAAAGGTTTGATCATTCTCG
TCTGTTTTGAGTACCGTGGAATGGTTCTCATTCCCAGGGAAACGTCCTTG
GCGCATTCCCGGGATCTTTCCGCTGTTTTTACGAGTATTCTTGCAGAAAT
GATTTCTTTGCTGCATACAATGCGTAGGCAAGACATAACAGCCATGTAGA
CTGACCGCCCAACAAGGTAGACCTCCTTTTATGTATGTCTTTGAAGTTTC
AATAATTTTGTCGGGAATGAGAAGTTTCGTTCTACGATAGGCTTTAGTTT
TCAAAAAACCTCATCCACTAAGCTCCGATTGTAGAAATCAATTCTCAAAG
GACAGTTTTCAGATTTGCTTTTTTGACACAtctgtaaaaaaattttaacg
tttttcttttCTCCAGATACGACTCCAATTCTGGAGGTGAACGTGAAATT
CAGAGAACTATGTTGGAATTGTTGAATCAGTTGGATGGGTTTGATGGTCG
TGGTGATGTCAAGGTATTTGAGAAGTATTTCTCAGACCGTTAAAAAACTA
AAACTGCAATTTTTATCTGGTTAATGACAACCTCCCCCTTTATCGTGCGG
AGGAAAGAAGCTGCAGGATggttttaaaatattcaaagcTAAATTTTTTA
ATATCCAAACCGTTACTTCAATTTCATACATGTTTTCCATAGGTTATAAT
GGCAACCAATCGAATAGATTCATTGGACCCTGCTCTGATTCGACCAGGTA
AACtttaaatgcaaaaaaatcttGTGTTGCTTTATGATTTTTAATTTAGT
CTcttcattctattttattttatttgtcatATTTGGAAGACTGATCATGG
GAAAGATCACAAATTCTTTCATTTGAACACCTACCAAAGTTTATCCAGTA
CTCTGTAGTCTACATAATgcctttttcatttcatttctttgCATTGCAGG
CCGTATCGACAGGAAAATTGAATTCCCTCTTCCCGATCAAAAAACTAAAC
GAAGAATATTCGGTATTCACACCAATAGAATGACTTTATCCAAAGATGTC
GATTTAGAAGAATATATTTTAGCCAAAGATGATTTATCCGGAGCTGATAT
CAAGGTGCGTGAAATTACAACCAACAATGTCTCTAACTCTGTTTATAGGG
TAGCGTACGTCCAAAATTTAGTCTCGAGATAAAAGAAGTTACTAACTGTT
CACAGAGCTCACTGGGTATTAGAAACGAAAGATTTTCACCGCTTAATATA
GTGATATCCCTAGCTAAGTGGGTTGGTAGGACCTTTCGAAAATTCACTAA
AGGTAGGAAAAATAAAGTTTGACCTATAAAGGGAGATGTAAACAACAGAG
AGGGGGATTGCAAAGGGATGATGGGTAGAATTTTTAACAGGGAAATATGA
AACAATAATATGCCACCAAATTTCTAGTTAGGATTAGGAAATAACTTGTA
CTGAGGTAATAGTTTGTAAaatcaaggacacttgtatagcgaagctggac
aaatttattttctttgaaccatGTGTGTCGTCGCAACATAGATATCGTCT
TTCTTTGACCAATAAGAGGTTGTTCCTCatgttttttcaaccaatcagaa
atacttTTTAGTAAAAGTACTTCACAATGAAAAACCATCGTCAGACAGAT
GGATTTTGCATGGAAAGTTTGTTGCTAaagatattttatgaaattgcTTT
GACATGATAGCAATAACAAGAAAACAACAATCGTACAATTACTTTATAAT
GAGTTTTATCACACCTTTATACAATcaaaaaaattacgaaaaaaaaaatt
tccttctcgTGAATGATAGcaataacaagaaaacaagaatcgaacaattt
aagaaaagagaaaatttccTTCTCGTGAATGAGATTTTGCTTGTAGTATG
ATGCTCGACATTTTGCTATAGCCATTACGTATAAGATTTGGGTAATTTGG
TGaaagttTAGGAGAGTTTAGgctattttttactcattttctctTCGTCA
TTTCAATTTAAACCTTCTaagatttgtttaaaatatttgttacacCTTGA
AATAACTTACGTCATTTACAATTTAACTTTTTCGAAGGATCCTCTTTTCA
GGGTTTTCGGCCTATAAATTGACCAATAATATTCTCAACCGCTGACCAGG
GTTCGCGGATTCTTGGTAAAATTACTTTTCTTTGGGGGTagagatttttt
gaaaagggaTTTTTAGTGAATAAAGGTGTAGAAACTCGTCTGCACACTGC
TTTGGTATTTACGATGTTATATTTTTCCTTCGCAGGCTATTTGTACGGAA
GCCGGTCTTCTCGCTTTACGAGAGCGAAGAATGAAGGTTACGaatgaaga
tttcaaaaaagcgAAGGAGAACGTCTTGTATCGAAAACAAGAGGGTACTC
CAGAAGGCTTGTACCTTTAATACAATCGTCgcccttttttgattttattt
ctaaattgtatttaaattttaggttttttggacctacctggaggtcctat
aaattaacctttgttcgtccgtccgtctgtccgtccgtccgtctgttacc
agcttttctcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020545XLOC_020545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035215-exon-sc0001275-1491911889:52595..52808TCONS_00035215-exon-sc0001275-1491911889:52595..52808Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:52595..52808TCONS_00035215-exon-sc0001275-1510915933:52595..52808Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:52595..52808TCONS_00035215-exon-sc0001275-1575043694:52595..52808Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:59578..59628TCONS_00035215-exon-sc0001275-1491911889:59578..59628Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:59578..59628TCONS_00035215-exon-sc0001275-1510915933:59578..59628Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:59578..59628TCONS_00035215-exon-sc0001275-1575043694:59578..59628Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:60629..60725TCONS_00035215-exon-sc0001275-1491911889:60629..60725Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:60629..60725TCONS_00035215-exon-sc0001275-1510915933:60629..60725Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:60629..60725TCONS_00035215-exon-sc0001275-1575043694:60629..60725Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:60945..61069TCONS_00035215-exon-sc0001275-1491911889:60945..61069Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:60945..61069TCONS_00035215-exon-sc0001275-1510915933:60945..61069Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:60945..61069TCONS_00035215-exon-sc0001275-1575043694:60945..61069Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:61279..61464TCONS_00035215-exon-sc0001275-1491911889:61279..61464Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:61279..61464TCONS_00035215-exon-sc0001275-1510915933:61279..61464Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:61279..61464TCONS_00035215-exon-sc0001275-1575043694:61279..61464Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:61911..62039TCONS_00035215-exon-sc0001275-1491911889:61911..62039Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:61911..62039TCONS_00035215-exon-sc0001275-1510915933:61911..62039Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:61911..62039TCONS_00035215-exon-sc0001275-1575043694:61911..62039Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:62319..62415TCONS_00035215-exon-sc0001275-1491911889:62319..62415Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:62319..62415TCONS_00035215-exon-sc0001275-1510915933:62319..62415Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:62319..62415TCONS_00035215-exon-sc0001275-1575043694:62319..62415Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:65687..65775TCONS_00035215-exon-sc0001275-1491911889:65687..65775Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:65687..65775TCONS_00035215-exon-sc0001275-1510915933:65687..65775Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:65687..65775TCONS_00035215-exon-sc0001275-1575043694:65687..65775Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:66029..66129TCONS_00035215-exon-sc0001275-1491911889:66029..66129Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:66029..66129TCONS_00035215-exon-sc0001275-1510915933:66029..66129Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:66029..66129TCONS_00035215-exon-sc0001275-1575043694:66029..66129Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:66511..66607TCONS_00035215-exon-sc0001275-1491911889:66511..66607Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:66511..66607TCONS_00035215-exon-sc0001275-1510915933:66511..66607Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:66511..66607TCONS_00035215-exon-sc0001275-1575043694:66511..66607Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:66787..66841TCONS_00035215-exon-sc0001275-1491911889:66787..66841Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:66787..66841TCONS_00035215-exon-sc0001275-1510915933:66787..66841Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:66787..66841TCONS_00035215-exon-sc0001275-1575043694:66787..66841Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:67044..67198TCONS_00035215-exon-sc0001275-1491911889:67044..67198Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:67044..67198TCONS_00035215-exon-sc0001275-1510915933:67044..67198Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:67044..67198TCONS_00035215-exon-sc0001275-1575043694:67044..67198Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1491911889:68380..68657TCONS_00035215-exon-sc0001275-1491911889:68380..68657Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1510915933:68380..68657TCONS_00035215-exon-sc0001275-1510915933:68380..68657Clytia hemisphaericaexon
TCONS_00035215-exon-sc0001275-1575043694:68380..68657TCONS_00035215-exon-sc0001275-1575043694:68380..68657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001275supercontigsc0001275:52595..68657 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.27998	0.00196376	3.09136	10.083	17.1871	13.5773	14.0458	16.428	2.29997	0.00278808	1.84643	1.21294	1.21046	5.29804e-05	0.000224639	0.554645	2.04976	2.10034	0.000614891	2.02435	1.75953	5.15021	2.08686	1.89679	9.76997	9.59143	1.2479	0.000836257	0.000546477	1.03127
Blast
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BLAST of TCONS_00035215 vs. Swiss-Prot (Human)
Match: PRS4 (26S proteasome regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 373/416 (89.66%), Postives = 402/416 (96.63%), Query Frame = 2 
Query:  281 YEPPIPTRVGKKAKKNRGPDAANKLPVVTPHRNCRLKLLKLERIKDFLLMEEEFIQNQERLKPQEEKHEEERSKVDDLRGTPMSVGSLEEIIDDNHAIVSTSVGSEHYVSMLSFVDKDLLEPGCSVLLNHKVHAVIGVLGDDTDPMVSVMKLDKAPQESYADIGGLDKQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHSPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDGRGDVKVIMATNRIDSLDPALIRPGRIDRKIEFPLPDQKTKRRIFGIHTNRMTLSKDVDLEEYILAKDDLSGADIKAICTEAGLLALRERRMKVTNEDFKKAKENVLYRKQEGTPEGLYL 1528
            YEPP+PTRVGKK KK +GPDAA+KLP+VTPH  CRLKLLKLERIKD+LLMEEEFI+NQE++KP EEK EEERSKVDDLRGTPMSVG+LEEIIDDNHAIVSTSVGSEHYVS+LSFVDKDLLEPGCSVLLNHKVHAVIGVL DDTDP+V+VMK++KAPQE+YADIGGLD QIQEIKESVELPLTHPE YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH+PSIVFIDEIDA+GTKRYDSNSGGEREIQRTMLELLNQLDGFD RGDVKVIMATNRI++LDPALIRPGRIDRKIEFPLPD+KTK+RIF IHT+RMTL+ DV L++ I+AKDDLSGADIKAICTEAGL+ALRERRMKVTNEDFKK+KENVLY+KQEGTPEGLYL
Sbjct:   25 YEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
The following BLAST results are available for this feature:
BLAST of TCONS_00035215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS40.000e+089.6626S proteasome regulatory subunit 4 OS=Homo sapien... [more]
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