TCONS_00035209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035209
Unique NameTCONS_00035209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035209 ID=TCONS_00035209|Name=TCONS_00035209|organism=Clytia hemisphaerica|type=transcript|length=723bp
ATCCAAAGTTCTAAAGGCCCCAACTTTTTTAGAAACTTTAAAAGTATGAT
CTGCAGAAATCAATACACTTCCTTTGACTTCATTGACAGGAAATTCAAAT
GCACCTTTCCATTTTAAAAGAACTCAAATAATAGTACTTCAAGTTTCGCA
GcactaaaaaagcttgtaaGTACACTACTTAGGGCCTCTTCTTCTTGAAA
ACTATGGTAGTGCCTCATTCTAAGGTTTGCAAGAATTTGCGATACTTGTT
GGAAGTTATTTCCTTTGCTgatcatttcaaacaaaagctCAATCAGTGCA
TAGGAATAGCCTGATCTATTGTAAAGAGACATTTGAAatgtctttgaaat
tttttcatccaaCAATGCAATGCAaacaatttacaatttttatctCCATT
GCATTGTAAATCTGTTGAACCAAAAGTATATTGTTCCTGACATAGAATAG
CAAACGAGGATTCAACCAGTTTTGTTTTACAATATTAGTTGTTAGTTGAT
AAGGCTGAAAGTTAGAATTGTGCTGGAAGCACCTAAGTTCAAATCCCCAA
TGCTGTTCTTGAGGTGACCAAATAAAGATGTGAATCGGCTTGCTGTATTC
TGAACTTGTTAAACGAAAGGGTTGTTGATATCGTAGGTTAGTTGGATCTT
CATTGAATTTCTTAACAATATCGTCAAGAACGTTTTGGAATTCAACTCCA
ATTACTACAGATGTAATACATTT
Run BLAST on NCBI

protein sequence of TCONS_00035209-protein

>TCONS_00035209-protein ID=TCONS_00035209-protein|Name=TCONS_00035209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
KCITSVVIGVEFQNVLDDIVKKFNEDPTNLRYQQPFRLTSSEYSKPIHIF
IWSPQEQHWGFELRCFQHNSNFQPYQLTTNIVKQNWLNPRLLFYVRNNIL
LVQQIYNAMEIKIVNCLHCIVG
Run BLAST on NCBI

transcript from alignment at sc0001273:30892..31614

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035209 ID=TCONS_00035209|Name=TCONS_00035209|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at sc0001273:30892..31614 (Clytia hemisphaerica)
AAATGTATTACATCTGTAGTAATTGGAGTTGAATTCCAAAACGTTCTTGA
CGATATTGTTAAGAAATTCAATGAAGATCCAACTAACCTACGATATCAAC
AACCCTTTCGTTTAACAAGTTCAGAATACAGCAAGCCGATTCACATCTTT
ATTTGGTCACCTCAAGAACAGCATTGGGGATTTGAACTTAGGTGCTTCCA
GCACAATTCTAACTTTCAGCCTTATCAACTAACAACTAATATTGTAAAAC
AAAACTGGTTGAATCCTCGTTTGCTATTCTATGTCAGGAACAATATACTT
TTGGTTCAACAGATTTACAATGCAATGGagataaaaattgtaaattgttT
GCATTGCATTGttggatgaaaaaatttcaaagacatTTCAAATGTCTCTT
TACAATAGATCAGGCTATTCCTATGCACTGATTGagcttttgtttgaaat
gatcAGCAAAGGAAATAACTTCCAACAAGTATCGCAAATTCTTGCAAACC
TTAGAATGAGGCACTACCATAGTTTTCAAGAAGAAGAGGCCCTAAGTAGT
GTACttacaagcttttttagtgCTGCGAAACTTGAAGTACTATTATTTGA
GTTCTTTTAAAATGGAAAGGTGCATTTGAATTTCCTGTCAATGAAGTCAA
AGGAAGTGTATTGATTTCTGCAGATCATACTTTTAAAGTTTCTAAAAAAG
TTGGGGCCTTTAGAACTTTGGAT

Coding sequence (CDS) from alignment at sc0001273:30892..31614

>TCONS_00035209 ID=TCONS_00035209|Name=TCONS_00035209|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0001273:30892..31614 (Clytia hemisphaerica)
AAATGTATTACATCTGTAGTAATTGGAGTTGAATTCCAAAACGTTCTTGA
CGATATTGTTAAGAAATTCAATGAAGATCCAACTAACCTACGATATCAAC
AACCCTTTCGTTTAACAAGTTCAGAATACAGCAAGCCGATTCACATCTTT
ATTTGGTCACCTCAAGAACAGCATTGGGGATTTGAACTTAGGTGCTTCCA
GCACAATTCTAACTTTCAGCCTTATCAACTAACAACTAATATTGTAAAAC
AAAACTGGTTGAATCCTCGTTTGCTATTCTATGTCAGGAACAATATACTT
TTGGTTCAACAGATTTACAATGCAATGGagataaaaattgtaaattgttT
GCATTGCATTGttggatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020543XLOC_020543Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035209-exon-sc0001273-1491911889:30892..31614TCONS_00035209-exon-sc0001273-1491911889:30892..31614Clytia hemisphaericaexon
TCONS_00035209-exon-sc0001273-1510915933:30892..31614TCONS_00035209-exon-sc0001273-1510915933:30892..31614Clytia hemisphaericaexon
TCONS_00035209-exon-sc0001273-1575043694:30892..31614TCONS_00035209-exon-sc0001273-1575043694:30892..31614Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035209-proteinTCONS_00035209-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001273supercontigsc0001273:30892..31614 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0690228	0.201924	0.0781512	0.0764587	2.89008	1.88899	1.17802	1.32923	0.930628	0.936595	0.699294	0.367751	0.459049	0.5244	0.0391935	0.0420606	0.10363	0.0531089	0.0733728	0	0.0667352	0	0.266274	0.1439	0.741068	0.950817	0.47322	0.202013	0.30644	0.468321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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