TCONS_00035208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035208
Unique NameTCONS_00035208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035208 ID=TCONS_00035208|Name=TCONS_00035208|organism=Clytia hemisphaerica|type=transcript|length=393bp
gttacctTCTATCATGTAGGCGAATATCCATTCATGGAGTTACCCTATCA
TGGCTTTTATGATGATTACAGCCCAGACGCAATGCATACTGTACGCCGAG
TCGTTGGTAATATCATCCTCTGGTTGACACAGCAAAAAGTAAAAGCCAAC
ACCTTTGCAAAGGTATACAATGCCGAAACATCAAGAAGGTCAAGCGAACT
GATAGGGAACCTGACTTTTGTTATGAAAGAAGAAGAGAAGGCTGCATCAA
ATGAAAGGATTAAAAACGTTCACTTCCCGAAAGAATTCAGTGGTTTCAAG
GGTGATGTATTTACACAAACCAACAAAGTACTTAAAGATCACCATGGGTG
GCAGGAGGTAATTTTTTCGTTTAATCAATATTTTAAGAAATCG
Run BLAST on NCBI

protein sequence of TCONS_00035208-protein

>TCONS_00035208-protein ID=TCONS_00035208-protein|Name=TCONS_00035208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
VTFYHVGEYPFMELPYHGFYDDYSPDAMHTVRRVVGNIILWLTQQKVKAN
TFAKVYNAETSRRSSELIGNLTFVMKEEEKAASNERIKNVHFPKEFSGFK
GDVFTQTNKVLKDHHGWQEVIFSFNQYFKKS
Run BLAST on NCBI

transcript from alignment at sc0001273:8139..8531

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035208 ID=TCONS_00035208|Name=TCONS_00035208|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at sc0001273:8139..8531 (Clytia hemisphaerica)
CGATTTCTTAAAATATTGATTAAACGAAAAAATTACCTCCTGCCACCCAT
GGTGATCTTTAAGTACTTTGTTGGTTTGTGTAAATACATCACCCTTGAAA
CCACTGAATTCTTTCGGGAAGTGAACGTTTTTAATCCTTTCATTTGATGC
AGCCTTCTCTTCTTCTTTCATAACAAAAGTCAGGTTCCCTATCAGTTCGC
TTGACCTTCTTGATGTTTCGGCATTGTATACCTTTGCAAAGGTGTTGGCT
TTTACTTTTTGCTGTGTCAACCAGAGGATGATATTACCAACGACTCGGCG
TACAGTATGCATTGCGTCTGGGCTGTAATCATCATAAAAGCCATGATAGG
GTAACTCCATGAATGGATATTCGCCTACATGATAGAaggtaac

Coding sequence (CDS) from alignment at sc0001273:8139..8531

>TCONS_00035208 ID=TCONS_00035208|Name=TCONS_00035208|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0001273:8139..8531 (Clytia hemisphaerica)
CGATTTCTTAAAATATTGATTAAACGAAAAAATTACCTCCTGCCACCCAT
GGTGATCTTTAAGTACTTTGTTGGTTTGTGTAAATACATCACCCTTGAAA
CCACTGAATTCTTTCGGGAAGTGAACGTTTTTAATCCTTTCATTTGATGC
AGCCTTCTCTTCTTCTTTCATAACAAAAGTCAGGTTCCCTATCAGTTCGC
TTGACCTTCTTGATGTTTCGGCATTGTATACCTTTGCAAAGGTGTTGGCT
TTTACTTTTTGCTGTGTCAACCAGAGGATGATATTACCAACGACTCGGCG
TACAGTATGCATTGCGTCTGGGCTGTAATCATCATAAAAGCCATGATAGG
GTAACTCCATGAATGGATATTCGCCTACATGATAGAaggtaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020542XLOC_020542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035208-exon-sc0001273-1491911889:8139..8531TCONS_00035208-exon-sc0001273-1491911889:8139..8531Clytia hemisphaericaexon
TCONS_00035208-exon-sc0001273-1510915933:8139..8531TCONS_00035208-exon-sc0001273-1510915933:8139..8531Clytia hemisphaericaexon
TCONS_00035208-exon-sc0001273-1575043694:8139..8531TCONS_00035208-exon-sc0001273-1575043694:8139..8531Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035208-proteinTCONS_00035208-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001273supercontigsc0001273:8139..8531 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.578441	0	0.436627	0	0.26002	0.410943	0	0.464148	0.649922	0	0	0.128413	1.02588	0.799036	3.50355	4.34733	3.32913	4.45076	3.07448	8.1503	2.4235	4.09188	0.442153	2.00991	0.207016	0	1.58632	2.25728	1.71207	2.61649
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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