TCONS_00035204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035204
Unique NameTCONS_00035204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035204 ID=TCONS_00035204|Name=TCONS_00035204|organism=Clytia hemisphaerica|type=transcript|length=253bp
aAACCTCTTAATAAGCTCCGATTGAGTAGTCTGTGtaaattttcattgtt
ctctGTACCATGACCAGGTCCAATCCCGGAGAGACAACCATTGAGtatat
gtttttttaaattttcaatttctttgtttatttcttcGAGATTTTTAGAT
GGAAGTTCTGACAAAAAGGGTTTGTGCAGGGTAAGAAAGGTTTCCAAATT
TCTAATGATGATGCTTGGCTCAGGAGTTGCTTTTGTCCTAATGGAACCTA
TAT
Run BLAST on NCBI

transcript from alignment at sc0001273:31947..32251-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035204 ID=TCONS_00035204|Name=TCONS_00035204|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0001273:31947..32251- (Clytia hemisphaerica)
AAACCTCTTAATAAGCTCCGATTGAGTAGTCTGTGTAAATTTTCATTGTT
CTCTGTACCATGACCAGGTCCAATTCCGGAGAGACAACCATGTTTTTTTT
TTNTCTGTACCATGACCAGGTCCAATCCCGGAGAGACAACCATTGAGTAT
ATGTTTTTTTAAATTTTCAATTTCTTTGTTTATTTCTTCGAGATTTTTAG
ATGGAAGTTCTGACAAAAAGGGTTTGTGCAGGGTAAGAAAGGTTTCCAAA
TTTCTAATGATGATGCTTGGCTCAGGAGTTGCTTTTGTCCTAATGGAACC
TATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020538XLOC_020538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035204-exon-sc0001273-1575043694:32185..32251TCONS_00035204-exon-sc0001273-1575043694:32185..32251Clytia hemisphaericaexon
TCONS_00035204-exon-sc0001273-1575043694:31947..32132TCONS_00035204-exon-sc0001273-1575043694:31947..32132Clytia hemisphaericaexon
TCONS_00035204-exon-sc0001273-1510915933:32185..32251TCONS_00035204-exon-sc0001273-1510915933:32185..32251Clytia hemisphaericaexon
TCONS_00035204-exon-sc0001273-1510915933:31947..32132TCONS_00035204-exon-sc0001273-1510915933:31947..32132Clytia hemisphaericaexon
TCONS_00035204-exon-sc0001273-1491911889:32185..32251TCONS_00035204-exon-sc0001273-1491911889:32185..32251Clytia hemisphaericaexon
TCONS_00035204-exon-sc0001273-1491911889:31947..32132TCONS_00035204-exon-sc0001273-1491911889:31947..32132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001273supercontigsc0001273:31947..32251 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731279	0	0	0	20.7096	15.5857	13.1625	13.2027	1.84871	8.39637	7.40884	2.43514	0.486351	0	0	1.33686	0	1.68803	0.777366	0.813458	0	0	0.838471	0	6.28114	8.40865	0	0	1.62333	0.826956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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