TCONS_00035202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035202
Unique NameTCONS_00035202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035202 ID=TCONS_00035202|Name=TCONS_00035202|organism=Clytia hemisphaerica|type=transcript|length=613bp
GTGGAAGAATTGCAGGAGTTGAGCAACTGCGCCATGTACATTCACAACGA
AGAAAAGCATTGTCAGGCAAAAGTTCTCCAGTTTGTACACGATTTTCCAG
CGATTGCTAAAGTCATGTATACCCAAGCACAAGGTAAGAAAATATGTAAC
TATCAACATAATGCAGATGGGAATCcggaattttcaaattttaggtgGAG
ATAATAGGATAAGTCGGCGGGACTAAAGTCTCAATTGTGGTTAACTTTGT
TGCAGCAAGCCGTTTTCAAATGTAATTTACTATTATTTCGATCTTtgaca
aaacataattttaaatatttggtGTGAGGCAGGTGAATGGCAAAATAAAT
GGCAAAATTTTCGCCTGTGGTGCCATCTTCAACTTTTTACATGTAATTTA
GTTTTGATTGGCTTGTGAACCGGTGCAGACTTTAACTTCAAGACCCTATG
ACGAAACCCTTatttaaattcattattttttcatttgggTAGGTGGTTTG
AGGGCATGTCCCTTGTGCAAAAGCGTTGGTGAGCATTGCAAACATCTAAG
CAAAACGGTATATTTGGGTAATCGAAAATTCCTCCCTGAAGACTCCGACC
TTAGAAAGTCCAC
Run BLAST on NCBI

transcript from alignment at sc0001273:9116..9728-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035202 ID=TCONS_00035202|Name=TCONS_00035202|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at sc0001273:9116..9728- (Clytia hemisphaerica)
GTGGAAGAATTGCAGGAGTTGAGCAACTGCGCCATGTACATTCACAACGA
AGAAAAGCATTGTCAGGCAAAAGTTCTCCAGTTTGTACACGATTTTCCAG
CGATTGCTAAAGTCATGTATACCCAAGCACAAGGTAAGAAAATATGTAAC
TATCAACATAATGCAGATGGGAATCCGGAATTTTCAAATTTTAGGTGGAG
ATAATAGGATAAGTCGGCGGGACTAAAGTCTCAATTGTGGTTAACTTTGT
TGCAGCAAGCCGTTTTCAAATGTAATTTACTATTATTTCGATCTTTGACA
AAACATAATTTTAAATATTTGGTGTGAGGCAGGTGAATGGCAAAATAAAT
GGCAAAATTTTCGCCTGTGGTGCCATCTTCAACTTTTTACATGTAATTTA
GTTTTGATTGGCTTGTGAACCGGTGCAGACTTTAACTTCAAGACCCTATG
ACGAAACCCTTATTTAAATTCATTATTTTTTCATTTGGGTAGGTGGTTTG
AGGGCATGTCCCTTGTGCAAAAGCGTTGGTGAGCATTGCAAACATCTAAG
CAAAACGGTATATTTGGGTAATCGAAAATTCCTCCCTGAAGACTCCGACC
TTAGAAAGTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020537XLOC_020537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035202-exon-sc0001273-1575043694:9116..9728TCONS_00035202-exon-sc0001273-1575043694:9116..9728Clytia hemisphaericaexon
TCONS_00035202-exon-sc0001273-1510915933:9116..9728TCONS_00035202-exon-sc0001273-1510915933:9116..9728Clytia hemisphaericaexon
TCONS_00035202-exon-sc0001273-1491911889:9116..9728TCONS_00035202-exon-sc0001273-1491911889:9116..9728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001273supercontigsc0001273:9116..9728 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0878162	0.428173	0	0	0.118425	0.0935811	0	0	0.340138	0	0	0.0624676	0.586379	1.04544	0.799618	1.42417	0.342381	1.29016	2.28758	3.30353	0.888141	0.999366	0.201377	1.35055	0	0.0841465	0.481654	0.514034	1.04981	1.34535
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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