TCONS_00035201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035201
Unique NameTCONS_00035201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035201 ID=TCONS_00035201|Name=TCONS_00035201|organism=Clytia hemisphaerica|type=transcript|length=1248bp
GTGGATATAAGAAATAGAATCGCTAAAATGTGCAAGCCTTTTTTATTGAT
GTGGATTAAACCGTAATTACATCGTCGCTTGGTTCAATCCTTAACGAATG
AAGTATGCATCGACCCCCGGATTTGATTGTGAGCATTATGAAATGTGAAA
ATTCTCTTCGATGTGAAgcagaaagtcaaaaaaaggCCTTGTGTTTGGTC
GAACAGGAGAAAATGTGAAATAAGTGGACGAACAGAAGTCAGAACGAAAA
ACAAGAAGTCATGATCAAAGTCGTGGTATATGTGAAGAATGGACTATCAA
GGACTGGaaagaattttaaagatttgatAAACAACAAAAGCGACcaaaaa
attctaccgtggtatatccaatggctgtttttgcctacaggTCCGAAAGC
TAAGAGAGAAGTCATCTTCGAAAAATATCGGACGAAATACACCTTACCCG
GAAACAATAATTGATGATGGACGTATTCTTCAATATAGAGTTAACACTCA
GTTTACAATGATAAAATGACTGTTTGATCATTAatgtaataaagatagat
ggagagcCAATGCCTTTTGATCTATTCTGATCTATCATCGGAAggaaaca
gctgtttggttgctttgatgataatgtgatggtgcaactctcaatgttaa
caaaatgccagCTCAAAatgtattcttatgaaattattATACAATTTTAG
TCTTACATCTTACATCAAACTATTTTGAAACTATATTTTTAAGAATCGAA
CCATGTATAGTTTGATTGATTGTTACCAAAATTATTTAGCAAAATTAATA
TTAAAATGTCTTAGACAAAATTCTGACGGTAACGATATTTTTAATATCAC
TCCATCGTAGTGTTTTTATAAATCTCCCTCGCCTAGATATGGCTCGAATC
ACACATTAATAAATCCCGAacggctagatgtcgtgctttaagccattgca
ggcaaaaaaatttaagatcgtaagaaatataatttctattgttttcgaat
atCCGTGAAGCTACTGATTGGTCGAGCGCTGAAATTGTATTacaatgtca
cgtgacctaatTAGGATCTCCTACCAACCTCAAaacggtgaaattgcata
ttttagtcacgtgactttggtaggaaatccttccaaacctaggcttcact
tttcgataaaatctagcccttcgggctttacagatatctgtggcttTGAT
ACAAAGTACTCAATTCCTTAACGGTTAAAATTTGACTAAATCTTTGGC
Run BLAST on NCBI

transcript from alignment at sc0001273:2..4153-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035201 ID=TCONS_00035201|Name=TCONS_00035201|organism=Clytia hemisphaerica|type=transcript|length=4152bp|location=Sequence derived from alignment at sc0001273:2..4153- (Clytia hemisphaerica)
GTGGATATAAGAAATAGAATCGCTAAAATGTGCAAGCCTTTTTTATTGAT
GTGGATTAAACCGTAATTACATCGTCGCTTGGTTCAATCCTTAACGAATG
AAGTATGCATCGACCCCCGGATTTGATTGTGAGCATTATGAAATGTGAAA
ATTCTCTTCGATGTGAAGCAGAAAGTCAAAAAAAGGCCTTGTGTTTGGTC
GAACAGGAGAAAATGTGAAATAAGTGGACGAACAGAAGTCAGAACGAAAA
ACAAGAAGTCATGATCAAAGTAAGTATAATATCTATATTTTACATAGTCA
TTTTATTTTTAAATAAGATGATTTTATTTCTTTTTTGATTCACTTATTTT
GTGTTTCCTTTTACACCTAATGCCGGTGTTTTTAAGCTGATTTTCTTCTA
TAGATTTTTCTTTGTTTTTCTGATGCCCTGAAAATTAATGGAAAATTTGA
GTCTACACAGGACTGTTTTTTTGCAAAAATCTGTGAAGGAAGTGATTGAG
GCTGGAATTATTTGCACAATTTCTTTCTTTGAAAGTAAACTTTTTGAGAA
TATTCACAATGACAATGAAATTGGCCAAAAATTTAAGAATGTCCTAAAAT
GATTGTTGTCTTGTGGACTTTAAAAACCAAGCTGAAAATATCCTTCTATC
ACAACTTTCTTTGCGCACATTCACTTCAATCGTCTAATTTGTTCAAATTT
TCTAAAAAGGCACACTATATAGTCCATAAAAAAAAGGAAATGGAAAATGG
TAAACAAGAAAGTGTTACAACAACATTATTTGAAGATTTTCAATGCTTTC
TGTGTAGACACCCTCTGACGACAAGAGAGACTACCTTACAGAAATTTTTT
GGCTATTTGCCAATTTTGGTGTAATTAAGCAGATTTAATTTTTGGCGATT
TGGTAAAATGTCTAAATTTGGCGTGATTTGATTTTGGCGGAGGAACAACC
AAGCTTTGTTGATTATTTGAACTGAAAACGGAGGAAAAAAGGTGTTTTTA
AAAGAAATGTAACCTAAAATAAAAGCTTGGTGTGAATTTAATCTTGAATG
TGAATGACCTATAAGGCTAAATTTGACTGAAAGAAATTTTGGCAAATTTG
CAAAAATTCCTTCTCAGAAAGGTAGTTTTTCAATTTCAGTCGTTTTGCTT
GGCAGGCCTTCTTGGACTCGGGAGGCCCGCATTTTTATATTTGTTCTTCA
AAAAAGTTCTCTGTAAGTGCAAAGAAAAAATTGAGAACAATTGAGAGAAA
AATCACTTTTTGAAAGCAATATTTTAACCTGTCAATNGACTGAAAGAAAT
TTTGGCAAATGTGGTGATTTTTTAGACAATTTTCCAAATTTGCAAAAATT
CCTTCTCAGAAAGGTAGTTTTTCAATTTCAGTCGTTTTGCTTGGCAGGCC
TTCTTTGACTCGGGAGGCCCGGGACTAGTATCTCATTTTTCTTAGATTTT
TTTCTTAGATTTTTCTTAGTTTGTATGAAAACCATGCGGGCCGCAACTTA
TGTAGAAAACGATTTGCTTCAAATTCTACATAGGAGATTCACTTCTATCA
TTCGGCTTTACTTCATTTTTCCCTCCTCACTCTAAATGCGGTCCGTTTTG
TTTCTGGGAAATCTAATAAAGGGTATCATGTCATGGCCTGGCTATTAGGT
AGTACTGTAAAATTCACCTTTTGATTAAAAGGAGAAAAAAATTCACCTTT
TGTGTTAAAAGGATCATTAAAAGGAACGGAGAAATTTTGAAAAAGAGAAT
AAAACCGCTTTCAAAGCCATCGTACATATTTTTTATCTTTTTATTATTCC
AGGTCGTGGTATATGTGAAGAATGGACTATCAAGGACTGGAAAGAATTTT
AAAGATTTGATAAACAACAAAAGCGACCAAAAAATTCTACCGTGGTATAT
CCAATGGCTGTTTTTGCCTACAGGTATATAAAAATTAAAAATATTGCTGG
CAGGTGGACGTGATCATGGGTCTAACCTTGATGCCTGATTTTCTTAAAAG
TATTTTCTCCGTATAATCTCATGGTTGATTGAAATTCGATTGACGTTTTT
GCTTAAGTTAATTTGTAATTTCCCGCGAACTTGTAATTTCCCTCCTAGAT
TTTGTAATTTCCGGCAAAAGTGAAATTTTCATCGTTTGGAAACTCATCAC
CTTTTTCGACTTTCTTACTAACTTCGAAGGCTTAAGTAAATGGAATACTA
TCCAATTAAGACTCGATTCGCGTTTCTATGAATTTTTTACCTGTTTTTAA
ATTTTCAGATTGATTTCCAGTGTTAAATTGACGTCTTTCAGAATTGTTAG
AATTTCAATCCAAACCATGAGATTAACCAGGAATCCCACTGCTTGTTTTC
GTGAAATTCTGGATAAATTTCCCGAGGTCAAATTTTGAAAATTTCAAAAT
TTGACCTCGGGAAATTTATCCCGAAATTCCCTTATAACCATGAGATTATT
ACTAGTACAAAACCCCAAAATGTGTCAAAGTTTCCCTTATTTTTTTACTG
ATGAAAAATTCCTCTACATTTATGTGCGAGAGAAGAAATGTTGCAAATGT
TAGTAAAAGTTATTTAAAAAAAAATATGAGTGTTTTGAAATCTAACCAAT
CAGACAGCACTAAAATGTTGCAAAATGTCAACAACAGCAAACCGTACAAC
TTTTCTTGTAAACAATGATTCGAATGTTTGAAAACGAACCAATCAGAAGA
AAAAAAAGTCGGAATGGTGTGATTAAAATTTTTTGGGAGTGAAGAAAATT
TTCTCCAACTCGATTTTTTCCCTAATCAATTTTAGCGTGGTGATGGGACG
TAAAACACAAAGGGAAAGCGAAAGTCGAAAAGTGGTTTTAATTAATATGA
TTTAGAAAATTGATCCTGCGTATTGTCGCATGTCGTTCACTACTCATAAC
TCTAAGGAGGGCAGAAACGTTCAAGCGTAGAAATTTTCGCGCTCTTTTGA
TATCTTTTTGGGAAGGTTTCTGCCAGGCAAGAAATTGAGCCAAGAAGACA
AGAAAATGAAAATTCATAAAAAGTAAAAAGCGAGGCGTTATTGATCAAGA
TTGTTCGGGCAAATGCAGCCAGATTTCAGAAAAAGAAAAGCTTTTAGGAA
ACAAAAAAAATGTCTTTGATATTTGCGATAAGGCGAAAAGAAGTAAGCGA
TGGAAAATGTTTCGTTTATTATTTTTTACTTCGTCGTAAAAAAAGAACAA
TAAATTTTTGATTCCAGACATACTGTATGTCCTTTTTGACAGACTTTTCG
CAAAAAATATTTTTATCTTGTTCTTTATTTTTCTTTATTTTAAGGTCCGA
AAGCTAAGAGAGAAGTCATCTTCGAAAAATATCGGACGAAATACACCTTA
CCCGGAAACAATAATTGATGATGGACGTATTCTTCAATATAGAGTTAACA
CTCAGTTTACAATGATAAAATGACTGTTTGATCATTAATGTAATAAAGAT
AGATGGAGAGCCAATGCCTTTTGATCTATTCTGATCTATCATCGGAAGGA
AACAGCTGTTTGGTTGCTTTGATGATAATGTGATGGTGCAACTCTCAATG
TTAACAAAATGCCAGCTCAAAATGTATTCTTATGAAATTATTATACAATT
TTAGTCTTACATCTTACATCAAACTATTTTGAAACTATATTTTTAAGAAT
CGAACCATGTATAGTTTGATTGATTGTTACCAAAATTATTTAGCAAAATT
AATATTAAAATGTCTTAGACAAAATTCTGACGGTAACGATATTTTTAATA
TCACTCCATCGTAGTGTTTTTATAAATCTCCCTCGCCTAGATATGGCTCG
AATCACACATTAATAAATCCCGAACGGCTAGATGTCGTGCTTTAAGCCAT
TGCAGGCAAAAAAATTTAAGATCGTAAGAAATATAATTTCTATTGTTTTC
GAATATCCGTGAAGCTACTGATTGGTCGAGCGCTGAAATTGTATTACAAT
GTCACGTGACCTAATTAGGATCTCCTACCAACCTCAAAACGGTGAAATTG
CATATTTTAGTCACGTGACTTTGGTAGGAAATCCTTCCAAACCTAGGCTT
CACTTTTCGATAAAATCTAGCCCTTCGGGCTTTACAGATATCTGTGGCTT
TGATACAAAGTACTCAATTCCTTAACGGTTAAAATTTGACTAAATCTTTG
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020536XLOC_020536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035201-exon-sc0001273-1575043694:3885..4153TCONS_00035201-exon-sc0001273-1575043694:3885..4153Clytia hemisphaericaexon
TCONS_00035201-exon-sc0001273-1575043694:2231..2351TCONS_00035201-exon-sc0001273-1575043694:2231..2351Clytia hemisphaericaexon
TCONS_00035201-exon-sc0001273-1575043694:2..859TCONS_00035201-exon-sc0001273-1575043694:2..859Clytia hemisphaericaexon
TCONS_00035201-exon-sc0001273-1510915933:3885..4153TCONS_00035201-exon-sc0001273-1510915933:3885..4153Clytia hemisphaericaexon
TCONS_00035201-exon-sc0001273-1510915933:2231..2351TCONS_00035201-exon-sc0001273-1510915933:2231..2351Clytia hemisphaericaexon
TCONS_00035201-exon-sc0001273-1510915933:2..859TCONS_00035201-exon-sc0001273-1510915933:2..859Clytia hemisphaericaexon
TCONS_00035201-exon-sc0001273-1491911889:3885..4153TCONS_00035201-exon-sc0001273-1491911889:3885..4153Clytia hemisphaericaexon
TCONS_00035201-exon-sc0001273-1491911889:2231..2351TCONS_00035201-exon-sc0001273-1491911889:2231..2351Clytia hemisphaericaexon
TCONS_00035201-exon-sc0001273-1491911889:2..859TCONS_00035201-exon-sc0001273-1491911889:2..859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001273supercontigsc0001273:2..4153 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10963	0.184398	0.1257	0.193313	1.89496	1.3575	1.5761	1.98675	2.99625	0.57045	0.541677	0.5782	2.55314	1.34832	9.94605	11.0194	16.1525	21.8807	14.2014	29.6152	31.1463	35.1084	3.05947	21.4361	0	0.033206	22.7911	21.6684	26.8468	37.241
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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