TCONS_00035199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035199
Unique NameTCONS_00035199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035199 ID=TCONS_00035199|Name=TCONS_00035199|organism=Clytia hemisphaerica|type=transcript|length=300bp
CGTAATGTTCATACAGCAGAGTCTGTTTTCGAAAGGCAATATGACTTAAT
ACCTTGAATGAGAAGGGTTCGGTTTGTACTATCACGTGTTGATGGGGTAT
ATACAGTCGAAAAAGAATAAAGTCGAAATGTTAAGAGGATTAATGCAACC
CATATAGGTTGTCCTAAAAGTTATGGAGGGCTTAAAACAGAGTATGTTTT
CTGGATGGGATGGACTTTATTCAGAAGTTACAATTTAACTCCTTAGTGTT
CAACATAATACTATATTCTCTCCAAGACCTCCAAAAGATTAAGAGCTTAT
Run BLAST on NCBI

transcript from alignment at sc0001271:68070..68369

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035199 ID=TCONS_00035199|Name=TCONS_00035199|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0001271:68070..68369 (Clytia hemisphaerica)
ATAAGCTCTTAATCTTTTGGAGGTCTTGGAGAGAATATAGTATTATGTTG
AACACTAAGGAGTTAAATTGTAACTTCTGAATAAAGTCCATCCCATCCAG
AAAACATACTCTGTTTTAAGCCCTCCATAACTTTTAGGACAACCTATATG
GGTTGCATTAATCCTCTTAACATTTCGACTTTATTCTTTTTCGACTGTAT
ATACCCCATCAACACGTGATAGTACAAACCGAACCCTTCTCATTCAAGGT
ATTAAGTCATATTGCCTTTCGAAAACAGACTCTGCTGTATGAACATTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020534XLOC_020534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035199-exon-sc0001271-1491911889:68070..68369TCONS_00035199-exon-sc0001271-1491911889:68070..68369Clytia hemisphaericaexon
TCONS_00035199-exon-sc0001271-1510915933:68070..68369TCONS_00035199-exon-sc0001271-1510915933:68070..68369Clytia hemisphaericaexon
TCONS_00035199-exon-sc0001271-1575043694:68070..68369TCONS_00035199-exon-sc0001271-1575043694:68070..68369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001271supercontigsc0001271:68070..68369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.389324	0	0.881625	0	0.619611	1.31225	3.32143	1.53237	2.18542	0.981894	3.03659	0.324508	0.890849	0.355914	2.02261	3.92326	0.454468	1.65023	3.07731	1.39777	3.64179	0.686641	1.13579	0.225051	0	0	3.12642	1.13946	2.89557	2.14236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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