TCONS_00035193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035193
Unique NameTCONS_00035193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035193 ID=TCONS_00035193|Name=TCONS_00035193|organism=Clytia hemisphaerica|type=transcript|length=434bp
GTTTGCTGTAGGGATAAGGAGAACAAAGGGATAATCTGGGTCGGGTGTAA
GGGAGTATATAATAACAGAATGGAGAGACAATGctaatatattttatttc
ataattgtaTTCAGGATCGCAGAATTCCAGTCAAGGCGACGAGCCAACAA
CCAGTCAAGGCGGCGAGCAAACATCCAGCCAAGAAGACAACGAACCAACA
GCGAGTCAAGAAGACGACGAACCAACAAATTTAGAAATCAATCCACTGGT
TTGGAGAAATGGTAACTTTTATTTGAACTGTAATTTGGATAGTAATCTTT
AAACTCTTCCGAGGTGTTTCGTATGACTCGTCCATTCTTTGTAATTTGGA
TAGTAATCTTTAAACTCTTCCGAGGTGTTTCGTATGACTTGTCCATTCTT
CTTCATTTACTTCAGGAACAACGTTATCTACACC
Run BLAST on NCBI

transcript from alignment at sc0001271:144..577

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035193 ID=TCONS_00035193|Name=TCONS_00035193|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0001271:144..577 (Clytia hemisphaerica)
GGTGTAGATAACGTTGTTCCTGAAGTAAATGAAGAAGAATGGACAAGTCA
TACGAAACACCTCGGAAGAGTTTAAAGATTACTATCCAAATTACAAAGAA
TGGACGAGTCATACGAAACACCTCGGAAGAGTTTAAAGATTACTATCCAA
ATTACAGTTCAAATAAAAGTTACCATTTCTCCAAACCAGTGGATTGATTT
CTAAATTTGTTGGTTCGTCGTCTTCTTGACTCGCTGTTGGTTCGTTGTCT
TCTTGGCTGGATGTTTGCTCGCCGCCTTGACTGGTTGTTGGCTCGTCGCC
TTGACTGGAATTCTGCGATCCTGAAtacaattatgaaataaaatatatta
gCATTGTCTCTCCATTCTGTTATTATATACTCCCTTACACCCGACCCAGA
TTATCCCTTTGTTCTCCTTATCCCTACAGCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020528XLOC_020528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035193-exon-sc0001271-1491911889:144..577TCONS_00035193-exon-sc0001271-1491911889:144..577Clytia hemisphaericaexon
TCONS_00035193-exon-sc0001271-1510915933:144..577TCONS_00035193-exon-sc0001271-1510915933:144..577Clytia hemisphaericaexon
TCONS_00035193-exon-sc0001271-1575043694:144..577TCONS_00035193-exon-sc0001271-1575043694:144..577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001271supercontigsc0001271:144..577 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.218	20.5472	10.8769	7.909	4.95957	2.75793	5.37477	6.70278	15.7893	16.2564	29.7098	26.7014	23.7476	28.1825	30.1066	26.2497	22.2286	32.0519	24.9097	26.4739	27.8049	26.4179	25.762	25.323	39.7297	35.739	32.4833	35.7977	38.1832	39.8774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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