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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035190 ID=TCONS_00035190|Name=TCONS_00035190|organism=Clytia hemisphaerica|type=transcript|length=2090bp
gagctttttaacctctttggctttaacatcgaattaggtttcttgattgt
acttccttctaatcgttttaagcttattgggctgaccttccagcgcagct
ggtttattatttGTTAATCTTGTTTTAATTTATTCCATACATTCTATAGC
TAGAGGAATAGTTCGATATAGCTTATTTTATTGAAGTCATTTTACGAAAA
TAAGttataaggcgagaccaatttgatttgttgttgtacgggccaagcta
cctaaacagagggtcggtcggtcggcgaaaaaataaaataaaagtagaat
ttcacctatgaaatctcataaaaaggcaacaaaaactactacatcatGAC
AAAAATGCGTAATAGAAAACAAAAAGGCACAAAATGCTCGAATTCATgga
ttaaaagaaaatttgaacattaaattctcaaaaccttggaaaaactacaa
acattttgaaaatttgggagTCTGtaaaaagcaatgaaaataaatatctA
CAcccaaaatgaattttatttttatttcgatttctGGAATTTTAAGGTCG
GTCGGGTCCGttaaacaactaatcaaattggtctcgcctaacttATTAAA
TAAATCTTATGGATTTTCCTATTGAAAAGTGTCGTTTCAAAGGCATGACG
GATTCGAATTTGGGAATAAATTAGAAAAGAGAAAGTGTTCAAGAAGGCTT
TATGATTGTCTTTTTTTCATTATAGAAACAATAATTAAAATTACAATAAA
TagagttaaaaaaaacaataaaaattcttgatttttcacTTGTCATAGAA
AGATGGTTGCACTGGCGGTGACCACTCTGTCAAATATTCCAGGAATATGA
CATGACTCAAGATTCAAGATATGGCTTGGTTGCTGTATACTTGTTATGAG
TGTTGATTGTTTGTACCACACCAAGCTCACGATCTGATGGTGGTACCGAA
TCGTTTAGCTGCTTGTTCTTTGGCCAAATATTTTGGGAAGACACAAGCAT
CAAAAGGGTTGGATTTGTAAATCTCTTGATAATGCGTCATTCCAGAAAAT
GCTGACTCATCGTTATTGTTGGTATGTATTTTATATTCTGGTTTAAACGG
TTTCACTTTCTCGTGTCCGATTTTTGATTGATAGCTACTGCGCATGACCG
AGGTGTCGGAAAATCGTTCACTTTTCGGTGGAAGTCGTAAATTATCGTCG
TATTGTGCATCGTATAAAATGCGGTCGACTTTTCCTGGATTTTTGAATGT
GGATGAATATGACGATTTTCCTTCGATTTTAGCGGATGATTTTTTGATCT
GCATTTGTCTGATACCCCCGACCCGTGGTTGAACGCCGAAATTTTGAAAC
ACGTCCTGATTTGTAGTTTTAGTGTCGAATTTTTCTTTAGGTGGTGTGTA
ACGATCTAACTTTTTGATTGTCTGTACTTTCTCTGTCACCTTTGGCAAGG
AGTTGTAGCTCATCATCTTGACTGTTTGAAAATCAACTGGAACGTTCATA
CTAAGATTGATCAAACTTGGATGTTCAGGGAACGTTTGTTGCCGTGCGCT
TTTCGCTTCGTTTAAATCATATTTATAATCAGATCGATTTTGAGTTGTAC
CCGAGAATTTTCCATTCTTGGTTAAGTGTTGTTTGGGTTTCATTGATTTG
GTGGGTGTTTGTTTTCGAGGTTGTTGAAAATGTGTTTTGTTGGTTGTCAT
GGAATCTGAAATTTCTCCGTCTGTACCAAGTTGGACATTATCCTTATGTG
GAACACATTTGGCAACGCGCTCCCCCTTTTGTCCATCATGCACTGTATTC
TTATAAGATTGTTTTGGTATAGCAGACAAACCTTCGTTTGGGTATAAGAG
GTTATACGAGAGAGCTGGTTTTTCGCGAAATGCGTTTTGagcgatttttt
ctttttttggaaagttttggtGATACTCGGTTTCCGAATTGAAGTTACGT
GATTCATCGGTATTCGGTTTGAAAGTCGTGTTTTGTGGAATGGGTTTGAC
TTGATTGACTTTATGGACTGGATATGAATCTTTGTATACTGATTGACCGT
TGAACAGGCCGTCGCTCAGTTTCTCGATCTCTCCTTTGAG Run BLAST on NCBI transcript from alignment at sc0001271:49782..51987- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035190 ID=TCONS_00035190|Name=TCONS_00035190|organism=Clytia hemisphaerica|type=transcript|length=2206bp|location=Sequence derived from alignment at sc0001271:49782..51987- (Clytia hemisphaerica)
GAGCTTTTTAACCTCTTTGGCTTTAACATCGAATTAGGTTTCTTGATTGT
ACTTCCTTCTAATCGTTTTAAGCTTATTGGGCTGACCTTCCAGCGCAGCT
GGTTTATTATTTGTTAATCTTGTTTTAATTTATTCCATACATTCTATAGC
TAGAGGAATAGTTCGATATAGCTTATTTTATTGAAGTCATTTTACGAAAA
TAAGTTATAAGGCGAGACCAATTTGATTTGTTGTTGTACGGGCCAAGCTA
CCTAAACAGAGGGTCGGTCGGTCGGCGAAAAAATAAAATAAAAGTAGAAT
TTCACCTATGAAATCTCATAAAAAGGCAACAAAAACTACTACATCATGAC
AAAAATGCGTAATAGAAAACAAAAAGGCACAAAATGCTCGAATTCATGGA
TTAAAAGAAAATTTGAACATTAAATTCTCAAAACCTTGGAAAAACTACAA
ACATTTTGAAAATTTGGGAGTCTGTAAAAAGCAATGAAAATAAATATCTA
CACCCAAAATGAATTTTATTTTTATTTCGATTTCTGGAATTTTAAGGTCG
GTCGGGTCCGTTAAACAACTAATCAAATTGGTCTCGCCTAACTTATTAAA
TAAATCTTATGGATTTTCCTATTGAAAAGTGTCGTTTCAAAGGCATGACG
GATTCGAATTTGGGAATAAATTAGAAAAGAGAAAGTGTTCAAGAAGGCTT
TATGATTGTCTTTTTTTCATTATAGAAACAATAATTAAAATTACAATAAA
TAGAGTTAAAAAAAACAATAAAAATTCTTGATTTTTCACTTGTCATAGAA
AGATGGTTGCACTGGCGGTGACCACTCTGTCAAATATTCCAGGGTAAGTT
TGTTAAAGTTAAATAAACACTAGGGACGACTCCATACAATGGACTCCAAA
GTTAACTGCACTCTACGTTGATCCGTTCATTTTGATCGAGTTCTATTATC
TCCTAACAGAATATGACATGACTCAAGATTCAAGATATGGCTTGGTTGCT
GTATACTTGTTATGAGTGTTGATTGTTTGTACCACACCAAGCTCACGATC
TGATGGTGGTACCGAATCGTTTAGCTGCTTGTTCTTTGGCCAAATATTTT
GGGAAGACACAAGCATCAAAAGGGTTGGATTTGTAAATCTCTTGATAATG
CGTCATTCCAGAAAATGCTGACTCATCGTTATTGTTGGTATGTATTTTAT
ATTCTGGTTTAAACGGTTTCACTTTCTCGTGTCCGATTTTTGATTGATAG
CTACTGCGCATGACCGAGGTGTCGGAAAATCGTTCACTTTTCGGTGGAAG
TCGTAAATTATCGTCGTATTGTGCATCGTATAAAATGCGGTCGACTTTTC
CTGGATTTTTGAATGTGGATGAATATGACGATTTTCCTTCGATTTTAGCG
GATGATTTTTTGATCTGCATTTGTCTGATACCCCCGACCCGTGGTTGAAC
GCCGAAATTTTGAAACACGTCCTGATTTGTAGTTTTAGTGTCGAATTTTT
CTTTAGGTGGTGTGTAACGATCTAACTTTTTGATTGTCTGTACTTTCTCT
GTCACCTTTGGCAAGGAGTTGTAGCTCATCATCTTGACTGTTTGAAAATC
AACTGGAACGTTCATACTAAGATTGATCAAACTTGGATGTTCAGGGAACG
TTTGTTGCCGTGCGCTTTTCGCTTCGTTTAAATCATATTTATAATCAGAT
CGATTTTGAGTTGTACCCGAGAATTTTCCATTCTTGGTTAAGTGTTGTTT
GGGTTTCATTGATTTGGTGGGTGTTTGTTTTCGAGGTTGTTGAAAATGTG
TTTTGTTGGTTGTCATGGAATCTGAAATTTCTCCGTCTGTACCAAGTTGG
ACATTATCCTTATGTGGAACACATTTGGCAACGCGCTCCCCCTTTTGTCC
ATCATGCACTGTATTCTTATAAGATTGTTTTGGTATAGCAGACAAACCTT
CGTTTGGGTATAAGAGGTTATACGAGAGAGCTGGTTTTTCGCGAAATGCG
TTTTGAGCGATTTTTTCTTTTTTTGGAAAGTTTTGGTGATACTCGGTTTC
CGAATTGAAGTTACGTGATTCATCGGTATTCGGTTTGAAAGTCGTGTTTT
GTGGAATGGGTTTGACTTGATTGACTTTATGGACTGGATATGAATCTTTG
TATACTGATTGACCGTTGAACAGGCCGTCGCTCAGTTTCTCGATCTCTCC
TTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035190-exon-sc0001271-1575043694:51145..51987 | TCONS_00035190-exon-sc0001271-1575043694:51145..51987 | Clytia hemisphaerica | exon |
| TCONS_00035190-exon-sc0001271-1575043694:49782..51028 | TCONS_00035190-exon-sc0001271-1575043694:49782..51028 | Clytia hemisphaerica | exon |
| TCONS_00035190-exon-sc0001271-1510915933:51145..51987 | TCONS_00035190-exon-sc0001271-1510915933:51145..51987 | Clytia hemisphaerica | exon |
| TCONS_00035190-exon-sc0001271-1510915933:49782..51028 | TCONS_00035190-exon-sc0001271-1510915933:49782..51028 | Clytia hemisphaerica | exon |
| TCONS_00035190-exon-sc0001271-1491911889:51145..51987 | TCONS_00035190-exon-sc0001271-1491911889:51145..51987 | Clytia hemisphaerica | exon |
| TCONS_00035190-exon-sc0001271-1491911889:49782..51028 | TCONS_00035190-exon-sc0001271-1491911889:49782..51028 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001271 | supercontig | sc0001271:49782..51987 - |
Blast
The following BLAST results are available for this feature:
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