TCONS_00035187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035187
Unique NameTCONS_00035187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035187 ID=TCONS_00035187|Name=TCONS_00035187|organism=Clytia hemisphaerica|type=transcript|length=3687bp
CCTCAACCAAATGTCTATTCAATGTCGAGTTTCAATTTAAATTCTTCAAA
GTGGAAGAGTTTCCTCGAGGTTCATCTACaccagaaaaaataaatatata
attttttctgaaatagtCACAATTTTGACCAGTTGTGATTTTTCCCAGTC
TGTGAAAAGTGCCTGGTTGCTCACAATAAGACACCCACTCGGTCCCAGAC
CGTTTAAAAAGTTCGTCAATTTTTTTCCTCTCAAGCCCCTCCCTTCATTA
GTATATCGATTCATTGATGGAGTTTCCAATTTTCCATATTTGGTACAATA
TGTGCTAATAATTATTCTCCATCGCTGGATCATTCCAATATTTCGTGCTC
GCTTTACCGATATTGATTATGTATTTCTTGTCATGTGGATTGGTATATTT
TACTTTCTCGAGGTTTCATTAAAATTGCTCCTTTTTGACTGCAATCATTC
GCGTTCAGACTGGACTCCAAGATGGTTGTCTTTCATGTCGCTCTTTTAAT
TTTCTGTCTTGCGCCTGGTGCATACTCTGAAGGAAAATGCCCTATAGCAG
GTTCGATTTTCGAATGTCGAGTAAGTCTTCCACGCGATGACCGACTGGAT
AAACCACAATGTGTTCAGAAGAGGTACAAAGAGACTCTAATGCAACGCCA
TTACTTCAAGCTAACAACGCCCGTACGCCCTGAAGATGAAAACCCCACCC
ATGAGCCTCTCTTTCCAACCCTTGATCAAGAGAATGACGTCATTTCGGCA
AAAGCAATGTTTGGAGATCTGGATGCTAAATGGTTCGCTAATTATTACGG
TATGGTGCGGACTTTGAATGCAACAGCGGCTACTCTGCTCTCATTGGTCA
AGAATAATCCAATGAAAACATACGCCGATTACAAATATATTTACCACGCC
TTCATGGGCACCATTCAgAAAATCCAGCAATTAGGACCAGAGCAGTTCTC
ACTACCTTCACAAACACCTTACTTCACGGACATCATTGAGAATGGGAGAT
GGCAAGAAGATAAATATTTCGTCCAACGAAGGTTGGCTGGTCAATGCCCG
TATTTTATAAGACGTGTCACTAAAAACGAGGAAAAAGATATTGGCTTCTC
GTTGGATAAATTGAAAAGTATGCTGAGCGAAAATTTTGATTGGAACTTTC
ATCTCAAACAGAAATATGGAAATGAAATGAACAAACTTGTGAAAGAGAAA
CGTGTTTTTGTTCTATACCACGAACACTATGATGAACTGTCTCACACTAA
AGATATTTTGGATACCAACCCACATGACAACATCAAACTTGAACAAACAA
CTTCACCCATAGTGCTTTTCGTGCTCACCGATGAAAAAGAACTCGAAGTT
GTCGCCATACAAATGGATTCAACTAAGAAAGattcACCAGTGTTCACACC
AAAGAGCTCGCCATTAGAATGGTCCAAAGCTAAAGGTCATGTTGAAATCG
TTGAAATGGCCACCTGTCAGTTGATTGGTCATCTCTTAGAAACACATGCA
ACGCAAGAGATCATTTGTAACTTATTTCCACGTCATTTGGGGTCCCTTCA
TCCTTTACATCAACTCATGACCCCACATTGCCAAGGTACCTCTCCCGTTG
GAGGTTTGGGACTAGCTGCTTTATTGGATGTTGAAAGATACATGCATCGA
TTATTTAGTATTGGATATGTCGGCTCACGGCAATATGTCAACAAGTATTA
TGAGGAGCAAGATTACCTGAATGCTGACTTCAATCACCAACTCAAGCGCA
ATGGATTAGCGGACGAAGATTTGATTCGATATCATCCATATCGCGATGAT
GGTAAACTCATTTGGAATGAAATCAAAACTTTCGCCAAGAAATACGTCAA
ATTATATTATAAGTCGAATGAAGACGTCATCTATGATAATGAGCTACAGG
GATTGGTTAACGAGCTTTCAGCTGATGGAACAGCTCAAAATGGTGGAGGG
AAgtACAAAGGCTTCCCTGGCAAATTCACCACCACTAAAGATTTGGAGAC
GTTCTTGACGAGGTTCATTTGGTTAGCAGTGAAGCACGCCATCAACAGTT
ACCCCCTGATTCCTTATGGCGCGTTCGTGCCCAGTGCTCCGACAAAATTG
TATGAAAATCCACAGGCTACACATTACGCACACAGTCTACCAAATGCACT
GGTCGTTTTGACGCAAGAAGTCTTGACTTTCACGCTAGCCTCGTTTCGCG
TTAACCGATTATTTGACTACTCCAAGCTAATGTTGGATAAAAAAGCTCGA
TGCCTTGTCAAGTCAACGTACAACAAATTGAATTTGTGCGTTCAGAAAGA
ATTGGAGGCGAGAAACAAGGCAAGATATGAGCGTGGTGATTTGACTTATC
AGTTTATGGAACCCAAATGGTTACCCAATAGCGTCCATAGCTGAGAGGAT
TAAGATTGTGAAGCAGGCTGGATAGACAAACCAGAAATGTGATCTTTTAT
GAGACTAATAATTTGtgatataaaatatatattttgaaatacgTCCAGCA
gttaatttgtattttatttacaacaaaatatttgtaaaataccGTGATAA
AATAGAAGAATCAAAATGATAGTTTGtctttttgaaataatatttaCAAT
GAATTTTACAGTCAAGNAATCAAAATGATAGTTtgtctttttgaaatatt
tacaataaattttaCAGTCAAGAACCCATAGAACAGGAATGAATATTACA
TTTCTTTATAAATATCAGTTGAAATGGACTTATTTACATCAATAGTCAAT
AGTAAATCTATACGATATACAACATCAAAAATACTTGTAAATCAGAAGAA
GGGAAATACTTGTAAATCAGAAATCTACTAGTACAATAAAATATGTTTCC
TGGCTTTTTTTCACGTGCCTATTTCCAGATAAAGGCATGAAAAAGCCAAA
GCTAAAAACATGTGAAGTCTTAATTGCTTCACATGCTCTTAATTGAAACT
GGAGTAATTTACCAAAAGAATTTTCGACCATCATCATTAGTTGGCCGCCA
AGATATAGaaacaacaacattattatGAAACTTCTTGATGGCGTTTTAAT
AAGAGGAAGGGACTCGTTGGAATGTAGGAGGTGGATTAAAACCAGACCGC
TTTTTTATCAATGAACGTAAACAATTCATTTTCAAGTGAGTTCTATTTTT
GGAACTGATGAAACTGTTGAGAAAATCTCGTAAAATTTCCGtttcaaaag
gaaaagaaattcATTCATTTAGAAAGTAAATCCAGTCACTTTCCGTCTTT
CCAACAACGGAGCCCTAGAGAAATACCGTACTTCGGTCTATCATATATAA
AcatgacgtaatattttatACAGACTCACCCAAAATAGCCTGGGAATTTG
CCTTGCACTCATGAAATGCAACATCAACGAACCCATTCATTTCATATGAA
AGTCACTGCAATAAACGAGATAGCTACAATACCAATCAAAACTACCAAAG
CAAGGGTTACTAATTTACATGTTCGATCGCATTTGATCTGTCGAACATCA
TCCGAATGTCGATTCCGTCCGGTGCATGCCTGAACTTTCTTCACCCAAAT
CTGTTGAAAGAAAATATATGAGATTTCGGTTAGGAGTTGTGAATGgcgtt
taatttttaagttttatttttgagccGTTGGAGAGAGATTGCACTGGGAT
AACCTAATTAATCTTACTCGAGTTATTAACCAagcga
Run BLAST on NCBI

transcript from alignment at sc0001271:34511..46379-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035187 ID=TCONS_00035187|Name=TCONS_00035187|organism=Clytia hemisphaerica|type=transcript|length=11869bp|location=Sequence derived from alignment at sc0001271:34511..46379- (Clytia hemisphaerica)
CCTCAACCAAATGTCTATTCAATGTCGAGTTTCAATTTAAATTCTTCAAA
GTGGAAGAGTTTCCTCGAGGTTCATCTACACCAGAAAAAATAAATATATA
ATTTTTTCTGAAATAGTCACAATTTTGACCAGTTGTGATTTTTCCCAGTC
TGTGAAAAGTGCCTGGTTGCTCACAATAAGACACCCACTCGGTCCCAGAC
CGTTTAAAAAGTTCGTCAATTTTTTTCCTCTCAAGCCCCTCCCTTCATTA
GTATATCGATTCATTGATGGAGTTTCCAATTTTCCATATTTGGTACAATA
TGTGCTAATAATTATTCTCCATCGCTGGATCATTCCAATATTTCGTGCTC
GCTTTACCGATATTGATTATGTATTTCTTGTCATGTGGATTGGTATATTT
TACTTTCTCGAGGTTTCATTAAAATTGCTCCTTTTTGACTGCAATCATTC
GCGTTCAGACTGGACTCCAAGATGGTTGTCTTTCATGTCGCTCTTTTAAT
TTTCTGTCTTGCGCCTGGTGCATACTCTGAAGGAAAATGCCCTATAGCAG
GTAATAAGTATTCACAATGCGAGTTTATTTTTGGTGTTTTAAAAGATCAT
CTCATCTAGTCTTTTTTCTTCTTTCATTGTTAAAAACTTTTAGGGCTTCT
ATGCCCAACCCAACCCCTCTGTTGCGAGTATTAACAAATCAGAAGCCTTT
CTCTGTCGGAAATCTGTAATATGTCTGTTTGTGAAAGTTTGCTACAGACA
TGACGATGTTTCATGACTTTGATCTATACTAAATCTAATTGGATACCCGT
TAGCAGCAAATTTTCATTATGCACATTATTTTTGTTCAAGATTTATATGA
TGATATTGAAAATTCTCTTGCAAATTCACATCAATTGCATGTGTTTTATT
TGTGTTCATGTCATAATGTCCCAATTTTGGTTTATATCAAATAATTTGTA
AATCTTGTAGGTTCGATTTTCGAATGTCGAGTAAGTCTTCCACGCGATGA
CCGACTGGATAAACCACAATGTGTTCAGAAGAGGTACAAAGAGACTCTAA
TGCAACGCCATTACTTCAAGCTAACAACGCCCGTACGCCCTGAAGATGAA
AACCCCACCCATGAGCCTCTCTTTCCAACCCTTGATCAAGAGAATGACGT
CATTTCGGCAAAAGCAATGTTTGGAGATCTGGATGCTAAATGGTTCGCTA
ATTATTACGGTATGGTGCGGACTTTGAATGCAACAGCGGCTACTCTGCTC
TCATTGGTCAAGAATAATCCAATGAAAACATACGCCGATTACAAATATAT
TTACCACGCCTTCATGGGCACCATTCAGGTAATTTTCTTTTCTTTTATAC
CAAAACTATTTTACGTTATTTACCTTTAAATACGATATGAACTTTTTCAT
CTAGAGAGATTAAAACAAGTTTTGGGCCAACATTTTACACTCATCAAGTT
TTATAAAACAAACATAACAAACTATACAAAGACCTTAAATGTTTTAGCTA
AGAAATCCTTTTTTGAAATCGGTCACTAAGCTACAGTGAAATTGCTTTAT
TTTTAGCCTAAAATGAACCTATAATTATCCTTAATTCGTAAAAGATTTCT
AGTTCCTTTAACAATACCTTATTAACCTTGCTGCATATCTCGAAATTTCC
ATAACTTCGTGCGTGTTCAAGTTATGGAGACTCCATCCACTATATTATGA
TTACTCTTCTCTCAAACAAACAGAAAATCCAGCAATTAGGACCAGAGCAG
TTCTCACTACCTTCACAAACACCTTACTTCACGGACATCATTGAGAATGG
GAGATGGCAAGAAGATAAATATTTCGTCCAACGAAGGTTGGCTGGTCAAT
GCCCGTATTTTATAAGACGTGTCACTAAAAACGAGGAAAAAGGTACCATA
CAAACGATTTATTTGAATTCAAAGGCTTTCATTCATTTCATCAACATGCC
CGGGAGGGTATTCATGATATGCACCATTGCAATGTCTTCTATGGAACCAT
CAGCTGATTGGTTGAAAACGTCACNGATATGCACCATTGCAATGTCTTCT
ATGGAACCAACAGCTGATTGGTTGAAAACGTCATTTTAACTGATTTTACG
TCACTTACAACCAATCAGCTATTGGGTCCGCGATGTAATGTCAGAAGACT
TTGAAATGGTGCATGAATAGTGGAGTCTCTATAACTCGAACGGGCACGAA
ACAAATTTGTTTGAGTTAGGGAAGTTTCGAAATATAGAGACGTTTTTATA
AAAAAGTGTTTACTGAAGGGATCAGTAGACTTCTTCGAGTTATAGAGGTA
ATCAGAGTTAGGCTCTACTGTATTAGGTTTGCTGGGTGACAGATATGTCA
AAACCGAAGTTAAAAAATTGACCCTTAATTGCTGTTTTATGGTTATTCTA
TCCCAGTTAAGACTTTTAAGGACCCTTATGGCACATACCCGACACTATTT
TGACTACCCTCCGTGTAAATAGAGTGCAAATGATATACAACAGTATTACT
CCAACTCTTTTATAACGAAGTGGATCTAGCAATTGCAAGACAGCCAGTAA
AACTTTTTAAGTTGAAATTGTTCCAGCCCAAATTTTAATGATACTAAAAA
TATTGCAGTCCATTCCACTCCAGTCCAATGCACTCTGAGCTTTATTTTTT
AGTCTATAACACGAGACTTTACCCACTTCAAAATACTTTTTCAGATATTG
GCTTCTCGTTGGATAAATTGAAAAGTATGCTGAGCGAAAATTTTGATTGG
AACTTTCATCTCAAACAGAAATATGGAAATGAAATGAACAAAGTAAGTTA
GACGAGTAACTAAGGGGAGAGGACATCCCTTGATACATAAGGGCTTATTA
CTAACAAAAATCTTCGAAGAAAGGGACTGAAAAATTAGAAAAATTCCCCG
CATGAGCCAAGCAACTAAATCTGTCTTTTCTTGTTATAACTGATGTTGGA
CCCGGTGAGTTTGTAGGGTAAAAAAAGTACTGTTATATGAATATAATGTT
TTTGTCAAAAACAGTGGCAGTTTCATTGATTTTTCTCAATCAAGGGAAAC
GTTACGACGCTCTAAAACATCTATAGGATTAAACCACCTCTATGAGTGCT
ATTAAATGGTGCATGAGTCACGATGCTCCTAGGTCCCTATTGGCGGTATC
CAGTCAAAAGCATGCCGTAACGAACCTCTCCCTCTGGAATGACCGTACAC
ACCATTTTTGTCTTTTCAGCTTGTGAAAGAGAAACGTGTTTTTGTTCTAT
ACCACGAACACTATGATGAACTGTCTCACACTAAAGATATTTTGGATACC
AACCCACATGACAACATCAAACTTGAACAAACAACTTCACCCATAGTGCT
TTTCGTGCTCACCGATGAAAAAGAACTCGAAGTTGTCGCCATACAAATGG
ATTCAACTAAGAAAGGTATGAATTTGACCAATTTACTTTGTAGTTAATTT
ACCGATATTTTATTATTTCCAAAATCCTCAAAATCATCTATCCAGCAAAA
ATATTAAAATTTCTGACTATCACGTTAAAAACGATAAATTTTACTTACTT
TTAACTCGCTTCTCCCTAAAAATGATCGAATCAACTTAGTCAAAAGTATG
AAGATCCACAAATGTTGTTAACAAATTATAACTGACAATAAAATGAAACT
GACGAAAACGGGGAATGTTCTTCAAACTATATTATTTACCGAAACGCGAG
AAAATATACGAGGGCTTTCTTTTCACACTCCTCATTATCCATAATTTACA
CGTTCTTTTGTTCTTCATTTTTCTTAAACATTCTTGATAATTTCTTCTCA
ATGAAAATGTTAAAGTGTTTTGATCAACCATCTTTCTCCATGACGATAAA
GATTCATTCAAAATACAAAAGTTTCCAATATTACAACAACATTTTCCTCA
AAACATAATTTCCAGCATATGGTCCTCGAATAAATGGTCCCCTTATCAAA
ACAATTACAGGGATCCCACTCCTCCTAAAATTCCTAAAATAAGTCAAAAC
TTCTAAAATCCTCCTAAAATTCAACAAATTCTCCTAAATTCCTAAAATCT
GAAAAATTTATCAAGCACGGTAGCTGATTATGTTTGTATATTTGTATAAT
CAGACAAGAAAATAAGATTGTTTCCTCATTAAAGTCAAAACAAACTGCGA
GCAAGCTACCTGACATTGAAACAACATGTTTAAATTATTTTTTTGCACTG
AAATATTTGAAACAAAAGCCTATGTTTATTGAAGGAGTGCAGACTTTATT
CAACAAAGAGGGCTCAAATGTTTAAGAGCAAGGTTTGGTGGTTTGCGCCC
TCGTCTGTGAATTTTTTACTTGAGCATAAGCTTTATTACAATACAATGCC
TTTCCCTATTAATCTACTATTCTTTTGTTTCGTTTAACCAAAAATAAAAA
GAAATTATGAACGCTGACAACCATTTTCTAACTTTTCATTACAAAATGTT
CTAAATAATCTGTCTTGCCATTTACTTTCATCTGCTATCATCGTCTATTT
TTTATCTATTCAATTTTTGGAAGATCTCAAGATGAGTTTTTTGCAGTGCC
GTAGGAAGCAATTTCATATTGGGGGTGGCTGAAGTTTAGTGACACCAACC
AAACCATGGTTGGCCCGAGGGGAAAATTTTGAAAATTTGAGCTCGAGATT
GCTTGAAAATGCACTCAGAACAAAATGCTTTCGAGAACAAATCAAAAATT
ATAAAAGAAAAACTTTGCATTTTGCAAAATAACCATTTTTGAAAAAATTA
TTGGGTGGCATAGGCCCGTTGCCCCCCAGTTGCAACAACACTGTAGGTAG
CTAGCCTTTTGTTGAAACAGTAGCGATATCCTTTCTTTTGTTGCTTTGAA
TAAAATCAGTCAATATTGCTCAGCCTGCATCTCAAATTTGTCCCCAGTTT
TTCTAATTCAAGTTGCCTTTTGTTAAGATTTTTGAGAATCTAAGTTAGCA
GTAAATGTGCCTGATTATTTATTTTAATAAGTTGATAGTATGCTTTAGTT
TGTTTTTGAGGCTCAACTATTATGACTAGTTTTATTTAGTTTGTGTCTTA
GGACACTTTGGTCTCCAAACCTGTCGTCTATTTTTTTATCTTTTCAATTT
TTGGAAGATCTAAAGATGAGTTTTTTGGTAACTAGCCTTCTGTTGAAATA
TATTTTGTTACTTTGAATAAAATCAGTCTATGTTGCCCAGATTACATTTC
AAATTTGTCCCAAGTTTTTCTAATCCAAAATGCCTTTTGTTAATATTTTT
GACCTTCTAAGTTAGCAGTAAGTATGACTGGTGATTTAGCCATAGTGAGA
GAATTTCTTTTAGAACGAATAATAGTTTACCAAGACATAAAGTAATTTTA
TTTTTGTTACATTATTTCAGTCTTCCTGTGGGTCATTTTTTTTCTCGGTA
GAACATTTTTCTGATTGCTGACTTGAAGGTCGATTTTAGAAATTTATTTC
TTAAACTTTCCTAAAATCCTCTTAAAAAATTGAAAATTCTCCTAAAATTT
GACCAAAATCCTCCTAAAATTTGTCCTAAAATTAAGATATTCAGGCGTGG
GATCCCTGAACAAAGCCATTTCTTTGTTGTGTTACAACCTTAATGGAAAC
TACTTCTCCGAAGAAATGTGCTCAGTTGCGCAGTCCTATAAATAACTCTA
CTCTAGGAAATTCCGAGGGGGAACCCCCGTACTGAGGCAAAATGGCCTTT
TTCACACACTCGAAAGTTCCTCAAAGGGGTTCAAAAGCCATTAAAAAGCA
GTCCAGTCTATGTAAGGGTTCCAAAATTACCAAAGTCAAAAATCAACTCT
CTCTAAGGGTCATAAATTCTTGAAATTTGGACTAAAAATTGAATGTTTTG
ACTGAAATTTAGGCGAAATAGTCACTCTAAGGGTGGCAAAAACTTCAAAA
AATGGATGAGCTGGCTTCTTAGTTACAATTGTTTAATCATTAACACGAGA
AACGATTGTAAGTAAAATCATACATTTTGGGTCGTTCAAAATCTACAAGT
AAGTATTTTACTTAAGGTATTCCCCAATCTTTTTGCGAGAGCTGAAAGTA
CAGATTTGGGCAAGAGCTTTTTCAAAAGGAGCCTCTAAATCCAATGATAT
TAATTATTATCGGGAAAATAGAGAGACATATTAAAAACAAACCTGAAATT
GCTACACGGTCCCGGGAGGGGGGCATTCGATTATTAAACGACGGCATGTG
CCGCCAAAAAATTGCTTTCAAAATCGGATCCTTACAGTGCAACCTTTGAG
CAGTGAAAGGGTACCCTTACAGTGCATTTTACCGAACGTTTCTCACCCTT
ACAATGAATTTTGATTGCATATCTTAATTTGTTGAAGCCACCCAATAATG
AATGATGTCGTCACAAAGTGTAAAACAAATCAAAATGAGTGCGAGTCAAA
ACTATGAAGATAAATCAGATTTTTACTGTCAGACTTGCGATTCAGCCTTC
CCCAAACACATCCTTACAGTATATCCAGCTAAAAGAAGACCCTTGTAGTG
CGCTCTATCAAAATTACACCCTTACAGTGAATTTTAAGGGTCTCGAAAAA
CCTACTCTTAAGGGCGGCACATGCCGTGGGTCGGACCATAGGGGTACACG
GTGCAATCGGCATAAGCTTTGGGCAATTCAGTGCGTATTATAGATTTTAT
CTAAATTTATTTTGAATTTTAGATTCACCAGTGTTCACACCAAAGAGCTC
GCCATTAGAATGGTCCAAAGCTAAAGGTCATGTTGAAATCGTTGAAATGG
CCACCTGTCAGTTGATTGGTCATCTCTTAGAAACACATGCAACGCAAGAG
ATCATTTGTAACTTATTTCCACGTCATTTGGGGTCCCTTCATCCTTTACA
TCAACTCATGACCCCACATTGCCAAGGTATGAAATCTTGTCAAGTTTCTT
TAGTTTTATTTATCGAAGGGTTATTAATGACTATTAATTAACTTTAATAC
ATTCTTCATTCAATCAAGGGATTGAACATTTTTCAGCGCAATTCTTTTTT
TCATTTTCATATTCATATATATTCATTTACACATCGAATAATCAAAATTT
TTGAATACAGTTGACGCTCTTTGATTCGATCTTATTGGAATTCGAATCAT
CGAAATATCGTATATCTGTAAACGGGAAACTCTCACAAACGATGCTCTAC
TATATCCATACGCTATTAGACGAAAAACGAATAATCCATGACCAAAATCC
AATTCCCTCTTCAAAATCAAAGATTTGAAATTTGATTTTCTCTCAAAAAG
GTACCTCTCCCGTTGGAGGTTTGGGACTAGCTGCTTTATTGGATGTTGAA
AGATACATGCATCGATTATTTAGTATTGGATATGTCGGCTCACGGCAATA
TGTCAACAAGTATTATGAGGAGCAAGATTACCTGAATGCTGACTTCAATC
ACCAACTCAAGGTAAAGTCTAAATTAACAACTTTAACATATTTATATAAT
TGATATCTACGTGACGTGACCATTAAACAATCATTCAGAACACAAATATT
GACGATCTATTAAAATTAGTCGTTTGTTTCTTATAAAAAACATTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAATTTCATGCTCTTGAAATATTCTTTCATATTCAA
GACTTCGTGAGCAAAAAAACATCCATCTCGTCAAAAAATTGAGTAATTTG
GCTAAGAACATTAATGTTTGCTTATTAATAGTGATTCTTGTAGATAAACA
TGCGTTTTTTGAGCCAACAAAATTTTTTTGCGAAAATCTGCTTGAGCCAT
CTTTTACCTATGATAGTACCCTACTTTCATGCAAAAAATCAGAAAAAATT
AATGATTCAATTTTTCACAAAGTCCAAAAAAAACATTTGTTTAGTCGTTT
TTTGGCCCAAATTTGCCCCAAAAATTATTTTTTCGAAAATCGGGCTCCGT
CACATTCGAGGGTTTATAGTTACACATCTTTGTGCAAAAAATCAGAAAAA
AAATGATGAGCCAATCTTGAGAAAAGTTGGTAACAAGTGAACGAACGAAC
GAACGGACGGACGGACGGACGGACGGACGAACAGAGGTTAATTTATAGGA
CCTCCACCGGGGAATCCAAAAAGGGAAATAGTTTAAAAGAAGGATTTGGT
AGAAAAACCTTTGTCCTTAGCCTCATTCCAAAGTCCGATAGGCTCTTTGT
TTTTCTCTACTTAATGGCGTTTCTATACTGAGAATTGGGTCAAACGTTAG
CTGCCAAAACTTTACAATGTGATATTGTTTCTTCTAGCGCAATGGATTAG
CGGACGAAGATTTGATTCGATATCATCCATATCGCGATGATGGTAAACTC
ATTTGGAATGAAATCAAAACTTTCGCCAAGAAATACGTCAAATTGTGAGT
CAATATTCTTCAAGGTTATTTATGCAGTGGAGTCTCCATAACAAATTGTG
AGTCTCTATTCTTAAATATTACTCAAAACTGAACAAAATTACGTACCTAG
AGCCACTTTTCGTGCTATCAGAATCATGAAAAGCGAACTAAACGACTGGG
AACGTGTCTGATCGCTAAACTATGCCAATCCTGCATTTGAACAGGATAGT
ACATTACACGAGTACGTCCAATTTCATTTCTTAAAACCTACTATTTCTCT
TTTCTCTATTTTTTTTTCTATTTTTTTCCCAGATATTATAAGTCGAATGA
AGACGTCATCTATGATAATGAGCTACAGGGATTGGTTAACGAGCTTTCAG
CTGATGGAACAGCTCAAAATGGTGGAGGGAAGGTGAGAAAATTTTGAATA
CTGTCAGAATTGTTTCTGAGCCTTTTGATGGCGACAGAATTGTTTTATTC
TCATCATCGGCTAGTTTTTGGAACAAGTTAAATCATGAGCAGTCGAAGAG
AGGTACCATAAGAATAGTAAACAGAGTTAAAATTGTTAAGAAAATTAGAT
TTTTTTTGCGTATCTTTATGGATGGACTTGTGTATTTTGATCCCTCTAAT
CTTATGTCACATTCTGCAATATTTTTAGTACAAAGGCTTCCCTGGCAAAT
TCACCACCACTAAAGATTTGGAGACGTTCTTGACGAGGTTCATTTGGTTA
GCAGTGAAGCACGCCATCAACAGTTACCCCCTGATTCCTTATGGCGCGTT
CGTGCCCAGTGCTCCGACAAAATTGTATGAAAATCCACAGGCTACACATT
ACGCACACAGTCTACCAAATGCACTGGTCGTTTTGGTAAGTTTAATTGAA
AAGATCGGTGAAGATGTAATTTAGCACCGTAACGAGTCATTCATAGAGAA
CTTACGCAACAATTTTCTGAATATTTGACACCCTTTCCCGCATTATTCGC
TGATAGAAATGACGTTTCTCAAACAATAGACGTACTCTTTTCGTAAACCC
TCTCTCCCCCTTCGCTGCGTAAGTACTATATGGATGGTTTCCAAGCACCA
AACCGTACTATATTTGAAGCTTACCTTCTCGTCCTATAGATATGTTACAG
TTGAATCTTAGGTTCTGCCCCTTGTAGAGATTGAATGAAACGAAAAAGGT
TTCATTGCAACTGCTTCGACGAATCAAATAGCTTAAATTGATTATGTGAG
TTCGAAGACTCATCTTGTCCCTATTTGATTTACTGTTAAGAATGCAAATG
AGTCGTTCCAGTCTTCTTTTGATCTACATCCTAGAAGAAATACTGAATCC
ACAGATCTGTAAAGCCCGAAGGGCTAGATTTGCGGCCTTGGTCAAAAAGT
GAAGCTCATCTTTGGAAGGATTTCCTACCAGAGTCACGTGACTAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACG
TGACTAAAATATGCAATTTCACCGGTTTGAGAGATGTGAAATAGCGTTTG
CCGCCTACTTTTTTTTATCTCGCGCTCCGAAAACAATTGAAATGCTAGAT
CCTATCCATCGGCACGAAATTTAAAAAGTCAAGTTTTTGCTTCACTTTTT
TTTGCTGGAGAAAGCTTAAAGTTGCCTATATAGCCCTTCGGGCTTTACAG
ATATCTGTGACTGAATCCCACTGAGAGTCTTGTATTTTAAAAGCAAGAAG
ATTCGTTGAAAACGAGTATAATAGCGGGTCGAATTCATCCATTACCGAGT
TTATGTATGTGTGTTTTTCTGTGACTGAGAACGACAAATCAGCACTTTTA
CCGTCCTTGGTTCTGCGGGTTTTTCCAAATCGCTTCAGTCACTCTATTGT
TCTCAAAAGTGCAATTACGTAAACTCGCTAATATCTCTTTAGACGCAAGA
AGTCTTGACTTTCACGCTAGCCTCGTTTCGCGTTAACCGATTATTTGACT
ACTCCAAGCTAATGTTGGATAAAAAAGCTCGATGCCTTGTCAAGTCAACG
TACAACAAATTGAATTTGTGCGTTCAGAAAGAATTGGAGGCGAGAAACAA
GGCAAGATATGAGCGTGGTGATTTGACTTATCAGTTTATGGAACCCAAAT
GGTTACCCAATAGCGTCCATAGCTGAGAGGATTAAGATTGTGAAGCAGGC
TGGATAGACAAACCAGAAATGTGATCTTTTATGAGACTAATAATTTGTGA
TATAAAATATATATTTTGAAATACGTCCAGCAGTTAATTTGTATTTTATT
TACAACAAAATATTTGTAAAATACCGTGATAAAATAGAAGAATCAAAATG
ATAGTTTGTCTTTTTGAAATAATATTTACAATGAATTTTACAGTCAAGNA
ATCAAAATGATAGTTTGTCTTTTTGAAATATTTACAATAAATTTTACAGT
CAAGAACCCATAGAACAGGAATGAATATTACATTTCTTTATAAATATCAG
TTGAAATGGACTTATTTACATCAATAGTCAATAGTAAATCTATACGATAT
ACAACATCAAAAATACTTGTAAATCAGAAGAAGGGAAATACTTGTAAATC
AGAAATCTACTAGTACAATAAAATATGTTTCCTGGCTTTTTTTCACGTGC
CTATTTCCAGATAAAGGCATGAAAAAGCCAAAGCTAAAAACATGTGAAGT
CTTAATTGCTTCACATGCTCTTAATTGAAACTGGAGTAATTTACCAAAAG
AATTTTCGACCATCATCATTAGTTGGCCGCCAAGATATAGAAACAACAAC
ATTATTATGAAACTTCTTGATGGCGTTTTAATAAGAGGAAGGGACTCGTT
GGAATGTAGGAGGTGGATTAAAACCAGACCGCTTTTTTATCAATGAACGT
AAACAATTCATTTTCAAGTGAGTTCTATTTTTGGAACTGATGAAACTGTT
GAGAAAATCTCGTAAAATTTCCGTTTCAAAAGGAAAAGAAATTCATTCAT
TTAGAAAGTAAATCCAGTCACTTTCCGTCTTTCCAACAACGGAGCCCTAG
AGAAATACCGTACTTCGGTCTATCATATATAAACATGACGTAATATTTTA
TACAGACTCACCCAAAATAGCCTGGGAATTTGCCTTGCACTCATGAAATG
CAACATCAACGAACCCATTCATTTCATATGAAAGTCACTGCAATAAACGA
GATAGCTACAATACCAATCAAAACTACCAAAGCAAGGGTTACTAATTTAC
ATGTTCGATCGCATTTGATCTGTCGAACATCATCCGAATGTCGATTCCGT
CCGGTGCATGCCTGAACTTTCTTCACCCAAATCTGTTGAAAGAAAATATA
TGAGATTTCGGTTAGGAGTTGTGAATGGCGTTTAATTTTTAAGTTTTATT
TTTGAGCCGTTGGAGAGAGATTGCACTGGGATAACCTAATTAATCTTACT
CGAGTTATTAACCAAGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020526XLOC_020526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035187-exon-sc0001271-1575043694:45830..46379TCONS_00035187-exon-sc0001271-1575043694:45830..46379Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:45052..45419TCONS_00035187-exon-sc0001271-1575043694:45052..45419Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:44488..44656TCONS_00035187-exon-sc0001271-1575043694:44488..44656Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:43588..43685TCONS_00035187-exon-sc0001271-1575043694:43588..43685Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:42965..43160TCONS_00035187-exon-sc0001271-1575043694:42965..43160Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:39504..39707TCONS_00035187-exon-sc0001271-1575043694:39504..39707Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:38969..39129TCONS_00035187-exon-sc0001271-1575043694:38969..39129Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:37986..38092TCONS_00035187-exon-sc0001271-1575043694:37986..38092Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:37598..37697TCONS_00035187-exon-sc0001271-1575043694:37598..37697Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:37145..37351TCONS_00035187-exon-sc0001271-1575043694:37145..37351Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1575043694:34511..36037TCONS_00035187-exon-sc0001271-1575043694:34511..36037Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:45830..46379TCONS_00035187-exon-sc0001271-1510915933:45830..46379Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:45052..45419TCONS_00035187-exon-sc0001271-1510915933:45052..45419Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:44488..44656TCONS_00035187-exon-sc0001271-1510915933:44488..44656Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:43588..43685TCONS_00035187-exon-sc0001271-1510915933:43588..43685Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:42965..43160TCONS_00035187-exon-sc0001271-1510915933:42965..43160Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:39504..39707TCONS_00035187-exon-sc0001271-1510915933:39504..39707Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:38969..39129TCONS_00035187-exon-sc0001271-1510915933:38969..39129Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:37986..38092TCONS_00035187-exon-sc0001271-1510915933:37986..38092Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:37598..37697TCONS_00035187-exon-sc0001271-1510915933:37598..37697Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:37145..37351TCONS_00035187-exon-sc0001271-1510915933:37145..37351Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1510915933:34511..36037TCONS_00035187-exon-sc0001271-1510915933:34511..36037Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:45830..46379TCONS_00035187-exon-sc0001271-1491911889:45830..46379Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:45052..45419TCONS_00035187-exon-sc0001271-1491911889:45052..45419Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:44488..44656TCONS_00035187-exon-sc0001271-1491911889:44488..44656Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:43588..43685TCONS_00035187-exon-sc0001271-1491911889:43588..43685Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:42965..43160TCONS_00035187-exon-sc0001271-1491911889:42965..43160Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:39504..39707TCONS_00035187-exon-sc0001271-1491911889:39504..39707Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:38969..39129TCONS_00035187-exon-sc0001271-1491911889:38969..39129Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:37986..38092TCONS_00035187-exon-sc0001271-1491911889:37986..38092Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:37598..37697TCONS_00035187-exon-sc0001271-1491911889:37598..37697Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:37145..37351TCONS_00035187-exon-sc0001271-1491911889:37145..37351Clytia hemisphaericaexon
TCONS_00035187-exon-sc0001271-1491911889:34511..36037TCONS_00035187-exon-sc0001271-1491911889:34511..36037Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001271supercontigsc0001271:34511..46379 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0718463	0.255858	0	0.0657255	0.0530256	5.82164	7.65314	30.2069	34.5737	24.1213	30.8616	0.0576597	0.0531684	0.125978	0.221647	0.437922	0.114039	0.225702	0	0	0	0	0	0	0.403899	0.0979968	0	0	0
Blast
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BLAST of TCONS_00035187 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.572e-29
Identity = 122/473 (25.79%), Postives = 204/473 (43.13%), Query Frame = 1 
Query: 1000 WQEDKYFVQRRLAGQCPYFIRRVTKNEEKDIGFSLDKLKSMLSENFDWNFHLKQKYGNEMNKLVKEKRVFVLYHEHYDELSHTKDILDTNPHDNIKLEQTTSPIVLFVLTDEKELEVVAIQMDSTKKD-SPVFTPKSSPLEWSKAKGHVEIVEMATCQLIGHLLETHATQEIICNLFPRHLGSLHPLHQLMTPHCQGTSPVXXXXXXXXXDVERYMHRLFSIGYVGSRQYVNKYYEEQDYLNADFNHQLKRNGLADEDLIRYHPYRDDGKLIWNEIKTFAKKYVKLYYKSNEDVIYDNELQGLVNELSADGTAQNXXXXXXXXXXXXXXXXDLETFLTRFIWLA-VKHAINSYPLIPYGAFVPSAPTKLYENPQAT-------HYAHSLPNALVVLTQEVLTFTLASFRVNRLF--DYSKLMLDKKARCLVKSTYNKLNLCVQKELEARNKARYERGDLTYQFMEPKWLPNSV 2385
            WQED  F  + L G  P  IRR T+  EK     L     M+  + +    L+Q+        V++  +F++  E  D +       D N  D   L+   +PI L       ++  +AIQ++    D +P+F P  +  +W  AK  V   +    Q I HLL TH   E+      R L ++HP+ +L+  H + T  +       L+       +  + G  G  Q V +  ++  Y +  F   +K  G+  ++ I Y+ YRDDG L+W  I+TF  + V +YY+ ++ V  D ELQ  VN++   G       K  GFP    + + L  +LT  I+ A  +HA  ++    + +++P+AP  +   P              +LP+           + L+ F+ N LF   Y +    +K      + + K    +   +  RNK +     L Y ++ P  +PNSV
Sbjct:  227 WQEDLMFGYQFLNGCNPVLIRRCTELPEK-----LPVTTEMVECSLERQLSLEQE--------VQQGNIFIVDFELLDGI-------DANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGR---KSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKK----QLPYYYLSPDRIPNSV 672
The following BLAST results are available for this feature:
BLAST of TCONS_00035187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOX51.572e-2925.79Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
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