TCONS_00035180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035180
Unique NameTCONS_00035180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035180 ID=TCONS_00035180|Name=TCONS_00035180|organism=Clytia hemisphaerica|type=transcript|length=1308bp
CTATGAAATACCTCGGAACTGTCACACCATTCAAGGGACTACGTGTGTAT
ACTCGATCTGCTATGGGTATGCCCGGCTCGTCTGAACATTTACAAGAACT
AATGTGTCGTATTTTTGGAGATTTAATTCAGCAAGGAATTGTTATTATTC
TTGCTGACGATGTTCACGTTGTTGGAAACACCATCGAGGAACTTTTAGAG
AATTGGAAAAGGGTGCTCCAACGACTCTCCCAAAACAATCTCTGCTTATC
CGCTGCCAAGACCGTGATCTGTCCAGTAGAGACAACAATCCTTGGCTGGA
TATGGAAAAATGGCACATTATCACCCTGCGTCCACAAGACATCACCCCTA
GCTTCCGTCAAGCCACCAGCAACATGCACATCAATGAGATCGTTCATCGG
TGCATTTAAAGCCCTTGCTCGTTGCATACCACGTTACTCTTCGCTCGTCG
CACCACTGGAGGATTCCATTAAAGGCATGCAAGGCCAGCAAAAGATACAC
TGGACGGACGAACTGAGGACTCAATTCCTTCGATGCCAAGAGGCTGTCAA
CTCACCCAAAACGATCACCATACCTCGACCCGACGATAAGCTTACATTGA
CAACAGACGCTTCTCCAGTCAACCAAGGTTTAGCCGCTACACTCTTCCTC
GATCGTGATGGCAAACGTCATATCGGCGGATTCTTCAGTTTTAAACTGAA
GTCGCACCAAATCGGATGGTGGCCCTGTGAACATGAAGCCCTTGCCATAT
CATCCGCTGTTCATCACTTTGCTCCATACATACGAGACTCTCACCACTCT
ACTCAAGTGCTGACCGACAACGAACCGTGCGTTGAAGCCAACCGACGATT
ACGTCAAGGAAAGTTTTCCACCTCAAGTCGCGTTTCGACCTTTCTTGCCA
CACTCAGCGAATTCAACGTAGAAGTTTGCCACATCAGCGGTTCATCCAAC
CATTCAAGCGATTTTGGTTCTCGTAACCCGAACGAATGCCGCGACAAATC
GTGCCAAATTTGCAAGTTCGTACAAGAGACAGTCGATTCAGTGGTTCAGC
AAGTATCGATCGACGACATCCTTTCAGGATCCGCTAGAATGCCGTTCCTT
AACAATTATTCTTGGCACTCTGCACAACAAGAATGCCCCTCCTTACGTCG
TGCATTCGCCCATCTACAACAAGGGACACGTCCACCACGGAAGGCGCGAC
ACATTCAAGACGTTCGAAAGTACCTACGCGTCGCTACGATCTCCGCCAAT
AATCTCCTTGTCGTCAAGAAGAATGATCCTTACGTCCACCAACGACAACT
GATCGTTG
Run BLAST on NCBI

protein sequence of TCONS_00035180-protein

>TCONS_00035180-protein ID=TCONS_00035180-protein|Name=TCONS_00035180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
MKYLGTVTPFKGLRVYTRSAMGMPGSSEHLQELMCRIFGDLIQQGIVIIL
ADDVHVVGNTIEELLENWKRVLQRLSQNNLCLSAAKTVICPVETTILGWI
WKNGTLSPCVHKTSPLASVKPPATCTSMRSFIGAFKALARCIPRYSSLVA
PLEDSIKGMQGQQKIHWTDELRTQFLRCQEAVNSPKTITIPRPDDKLTLT
TDASPVNQGLAATLFLDRDGKRHIGGFFSFKLKSHQIGWWPCEHEALAIS
SAVHHFAPYIRDSHHSTQVLTDNEPCVEANRRLRQGKFSTSSRVSTFLAT
LSEFNVEVCHISGSSNHSSDFGSRNPNECRDKSCQICKFVQETVDSVVQQ
VSIDDILSGSARMPFLNNYSWHSAQQECPSLRRAFAHLQQGTRPPRKARH
IQDVRKYLRVATISANNLLVVKKNDPYVHQRQLIV
Run BLAST on NCBI

transcript from alignment at sc0001269:72768..74132+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035180 ID=TCONS_00035180|Name=TCONS_00035180|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at sc0001269:72768..74132+ (Clytia hemisphaerica)
CTATGAAATACCTCGGAACTGTCACACCATTCAAGGGACTACGTGTGTAT
ACTCGATCTGCTATGGGTATGCCCGGCTCGTCTGAACATTTACAAGAACT
AATGTGTCGTATTTTTGGAGATTTAATTCAGCAAGGAATTGTTATTATTC
TTGCTGACGATGTTCACGTTGTTGGAAACACCATCGAGGAACTTTTAGAG
AATTGGAAAAGGGTGCTCCAACGACTCTCCCAAAACAATCTCTGCTTATC
CGCTGCCAAGACCGTGATCTGTCCAGTAGAGACAACAATCCTTGGCTGGA
TATGGAAAAATGGCACATTATCACCCTGCGTCCACAAGACATCACCCCTA
GCTTCCGTCAAGCCACCAGCAACATGCACATCAATGAGATCGTTCATCGG
TGCATTTAAAGCCCTTGCTCGTTGCATACCACGTTACTCTTCGCTCGTCG
CACCACTGGAGGATTCCATTAAAGGCATGCAAGGCCAGCAAAAGATACAC
TGGACGGACGAACTGAGGACTCAATTCCTTCGATGCCAAGAGGCTGTCAA
CTCACCCAAAACGATCACCATACCTCGACCCGACGATAAGCTTACATTGA
CAACAGACGCTTCTCCAGTCAACCAAGGTTTAGCCGCTACACTCTTCCTC
GATCGTGATGGCAAACGTCATATCGGCGGATTCTTCAGTTTTAAACTGAA
GTCGCACCAAATCGGATGGTGGCCCTGTGAACATGAAGCCCTTGCCATAT
CATCCGCTGTTCATCACTTTGCTCCATACATACGAGACTCTCACCACTCT
ACTCAAGTGCTGACCGACAACGAACCGTGCGTTGAAGCCAACCGACGATT
ACGTCAAGGAAAGTTTTCCACCTCAAGTCGCGTTTCGACCTTTCTTGCCA
CACTCAGCGAATTCAACGTAGAAGTTTGCCACATCAGCGGTTCATCCAAC
CATTCAAGCGATTTTGGTTCTCGTAACCCGAACGAATGCCGCGACAAATC
GTGCCAAATTTGCAAGTTCGTACAAGAGACAGTCGATTCAGTGGTTCAGC
AAGTATCGATCGACGACATCCTTTCAGGATCCGCTAGAATGCCGTTCCTT
AACAATTATTCTTGGCACTCTGCACAACAAGAATGCCCCTCCTTACGTCG
TGCATTCGCCCATCTACAACAAGGGACACGTCCACCACGGAAGGCGCGAC
ACATTCAAGACGTTCGAAAGTACCTACGCGTCGCTACAATCTCCGCCAAT
AATCTNCACATTCAAGACGTTCGAAAGTACCTACGCGTCGCTACGATCTC
CGCCAATAATCTCCTTGTCGTCAAGAAGAATGATCCTTACGTCCACCAAC
GACAACTGATCGTTG

Coding sequence (CDS) from alignment at sc0001269:72768..74132+

>TCONS_00035180 ID=TCONS_00035180|Name=TCONS_00035180|organism=Clytia hemisphaerica|type=CDS|length=2610bp|location=Sequence derived from alignment at sc0001269:72768..74132+ (Clytia hemisphaerica)
ATGAAATACCTCGGAACTGTCACACCATTCAAGGGACTACGTGTGTATAC
TCGATCTGCTATGGGTATGCCCGGCTCGTCTGAACATTTACAAGAACTAA
TGTGTCGTATTTTTGGAGATTTAATTCAGCAAGGAATTGTTATTATTCTT
GCTGACGATGTTCACGTTGTTGGAAACACCATCGAGGAACTTTTAGAGAA
TTGGAAAAGGGTGCTCCAACGACTCTCCCAAAACAATCTCTGCTTATCCG
CTGCCAAGACCGTGATCTGTCCAGTAGAGACAACAATCCTTGGCTGGATA
TGGAAAAATGGCACATTATCACCCTGCGTCCACAAGACATCACCCCTAGC
TTCCGTCAAGCCACCAGCAACATGCACATCAATGAGATCGTTCATCGGTG
CATTTAAAGCCCTTGCTCGTTGCATACCACGTTACTCTTCGCTCGTCGCA
CCACTGGAGGATTCCATTAAAGGCATGCAAGGCCAGCAAAAGATACACTG
GACGGACGAACTGAGGACTCAATTCCTTCGATGCCAAGAGGCTGTCAACT
CACCCAAAACGATCACCATACCTCGACCCGACGATAAGCTTACATTGACA
ACAGACGCTTCTCCAGTCAACCAAGGTTTAGCCGCTACACTCTTCCTCGA
TCGTGATGGCAAACGTCATATCGGCGGATTCTTCAGTTTTAAACTGAAGT
CGCACCAAATCGGATGGTGGCCCTGTGAACATGAAGCCCTTGCCATATCA
TCCGCTGTTCATCACTTTGCTCCATACATACGAGACTCTCACCACTCTAC
TCAAGTGCTGACCGACAACGAACCGTGCGTTGAAGCCAACCGACGATTAC
GTCAAGGAAAGTTTTCCACCTCAAGTCGCGTTTCGACCTTTCTTGCCACA
CTCAGCGAATTCAACGTAGAAGTTTGCCACATCAGCGGTTCATCCAACCA
TTCAAGCGATTTTGGTTCTCGTAACCCGAACGAATGCCGCGACAAATCGT
GCCAAATTTGCAAGTTCGTACAAGAGACAGTCGATTCAGTGGTTCAGCAA
GTATCGATCGACGACATCCTTTCAGGATCCGCTAGAATGCCGTTCCTTAA
CAATTATTCTTGGCACTCTGCACAACAAGAATGCCCCTCCTTACGTCGTG
CATTCGCCCATCTACAACAAGGGACACGTCCACCACGGAAGGCGCGACAC
ATTCAAGACGTTCGAAAGTACCTACGCGTCGCTACGATCTCCGCCAATAA
TCTCCTTGTCGTCAAGAAGAATGATCCTTACGTCCACCAACGACAACTGA
TCGTTATGAAATACCTCGGAACTGTCACACCATTCAAGGGACTACGTGTG
TATACTCGATCTGCTATGGGTATGCCCGGCTCGTCTGAACATTTACAAGA
ACTAATGTGTCGTATTTTTGGAGATTTAATTCAGCAAGGAATTGTTATTA
TTCTTGCTGACGATGTTCACGTTGTTGGAAACACCATCGAGGAACTTTTA
GAGAATTGGAAAAGGGTGCTCCAACGACTCTCCCAAAACAATCTCTGCTT
ATCCGCTGCCAAGACCGTGATCTGTCCAGTAGAGACAACAATCCTTGGCT
GGATATGGAAAAATGGCACATTATCACCCTGCGTCCACAAGACATCACCC
CTAGCTTCCGTCAAGCCACCAGCAACATGCACATCAATGAGATCGTTCAT
CGGTGCATTTAAAGCCCTTGCTCGTTGCATACCACGTTACTCTTCGCTCG
TCGCACCACTGGAGGATTCCATTAAAGGCATGCAAGGCCAGCAAAAGATA
CACTGGACGGACGAACTGAGGACTCAATTCCTTCGATGCCAAGAGGCTGT
CAACTCACCCAAAACGATCACCATACCTCGACCCGACGATAAGCTTACAT
TGACAACAGACGCTTCTCCAGTCAACCAAGGTTTAGCCGCTACACTCTTC
CTCGATCGTGATGGCAAACGTCATATCGGCGGATTCTTCAGTTTTAAACT
GAAGTCGCACCAAATCGGATGGTGGCCCTGTGAACATGAAGCCCTTGCCA
TATCATCCGCTGTTCATCACTTTGCTCCATACATACGAGACTCTCACCAC
TCTACTCAAGTGCTGACCGACAACGAACCGTGCGTTGAAGCCAACCGACG
ATTACGTCAAGGAAAGTTTTCCACCTCAAGTCGCGTTTCGACCTTTCTTG
CCACACTCAGCGAATTCAACGTAGAAGTTTGCCACATCAGCGGTTCATCC
AACCATTCAAGCGATTTTGGTTCTCGTAACCCGAACGAATGCCGCGACAA
ATCGTGCCAAATTTGCAAGTTCGTACAAGAGACAGTCGATTCAGTGGTTC
AGCAAGTATCGATCGACGACATCCTTTCAGGATCCGCTAGAATGCCGTTC
CTTAACAATTATTCTTGGCACTCTGCACAACAAGAATGCCCCTCCTTACG
TCGTGCATTCGCCCATCTACAACAAGGGACACGTCCACCACGGAAGGCGC
GACACATTCAAGACGTTCGAAAGTACCTACGCGTCGCTACGATCTCCGCC
AATAATCTCCTTGTCGTCAAGAAGAATGATCCTTACGTCCACCAACGACA
ACTGATCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020520XLOC_020520Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035180-proteinTCONS_00035180-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035180-exon-sc0001269-1491911889:72768..73969TCONS_00035180-exon-sc0001269-1491911889:72768..73969Clytia hemisphaericaexon
TCONS_00035180-exon-sc0001269-1510915933:72768..73969TCONS_00035180-exon-sc0001269-1510915933:72768..73969Clytia hemisphaericaexon
TCONS_00035180-exon-sc0001269-1575043694:72768..73969TCONS_00035180-exon-sc0001269-1575043694:72768..73969Clytia hemisphaericaexon
TCONS_00035180-exon-sc0001269-1491911889:74027..74132TCONS_00035180-exon-sc0001269-1491911889:74027..74132Clytia hemisphaericaexon
TCONS_00035180-exon-sc0001269-1510915933:74027..74132TCONS_00035180-exon-sc0001269-1510915933:74027..74132Clytia hemisphaericaexon
TCONS_00035180-exon-sc0001269-1575043694:74027..74132TCONS_00035180-exon-sc0001269-1575043694:74027..74132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001269supercontigsc0001269:72768..74132 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.378891	0.270917	0.302346	0.400238	0.728575	0.450113	0.652027	0.879257	0.533124	0.789598	0.501119	0.596393	0.588239	0.48418	0.913577	1.65014	1.70277	1.08322	1.52215	2.16029	1.64599	1.60393	0.908769	0.980098	0.138638	0	1.47458	1.38994	0.355389	0.433668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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