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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035179 ID=TCONS_00035179|Name=TCONS_00035179|organism=Clytia hemisphaerica|type=transcript|length=2152bp
GCGCTTTCCCCCTTTAATAAACGGTATTTTCCATCCAACGTTTGCGTGAA
GACCACTCGGACAGGGTTGGAAGGGTTGGGACAAGTGGCCATAACTCATT
GGATGCAACCAGTAGATATTGGTGAAATAATTTTCATACGAGTTTTTCAA
TCTCAAATCATTCATACGACAGTGCGACATTGAAAATAAACTCAATTTGA
AGGTTTAGCATCCAGCCTCAACGCACTTTACAGAAGCTTGTTGAGTTGAC
AGTTTAGGATTTCATAAAGTTTATTTCTTTCCATTTAGAGTAAAAGAAAA
CCAAAATGAACAAAACACTAGCGAACTTCAGCGAAGTGTTCGCTGCTTTA
TACATCTTTCTAATGATTGCTTCCATCACTGGCAATttggtttgtttgtt
tggaTTGACTAGAAAATACCACAAGCGAAGATTTAGAGATCACTTCTTTA
TCTCCATGGTGATTTGTGATTTGTTGAGAATCTCCCTCACTGGTCCAATG
GAAATCAGAGGGTTAATGCAACAACAGGTTACCGATGAATCTTTTTGTAT
TGGTTTCTCATTCATTATGTCTCTTTTCGAGTTCACATCGATAAGCCATT
TACTACTGGTCGTCATGGATCGTTACATCTGTGTGTGTAAACCGACCCTT
GCGTTAAAGCTCTATCTACAACCGACCACTATTTACAAAGCAATTTTGTT
ATCCTATTTATACGGCTTATTTTGGTCTGTATTGCCTTTGTTTGGTCTTG
GAGAATTTGGTTTCCAGATCGGAGAGTTGCAGTGTGGATTGAAACCGAAA
CATGATATAGCAAGTAAGGTGTATATCCTCCTTGTTTTGTTGATCGCTTA
TATCGTACCCGTCGGTATCACCATATGGTGCTTTTTTCACGTCTGGAAGA
GGacaaaaaccaacaacaatGGTGTTGTAACTGTCTCCGACGAATCGCAG
GATCAAAAAGACCTTAGAAAATATTTCTCCAGCGATCGCAAACAGTTTCA
ATTAATCCTGGCGCTCattttaactttcattttcacgtGGTTTGTGTATG
ATTTGACCATGTTTGAAGAAATTTATATCGCACAAGAAGCAAATGCTTAT
GCTGAGATTGTCACCACTTTTATCGGTCAAAGTTCAGCTCTCATCACACC
GTTGGCGATTCTAGCATTTTACACTGATCTACAAAAAACATTCATGAAAT
TCTTAGGAAAGAAAAGGGCGGAGAATACATCAGTGACAAAGAGTAGAGCA
AGCACTAGGGTGGTACCGATAGCCGGTTCTGTCGAAACTCCCTCCGCtac
ataaaaataaacaaaacaggCTCCAAAGAAATACTAAAGACGAAAATTAT
TGAATGGTGATGTCATTCAACCACCGTGACTTGTAAATCCACCAAAATAA
TCGGTGAAATTTCATAGCAAATGAAGATATCGGGTTTTCAGCTGAATTAT
AAGACTCGTGTTGAGGCTCATTCAAAAGGATCATTGCTTACAGACTTACA
GAAAAATAGCATCCACCTTAAACACGAAAATTTTTTGGGCTCCAGGATAA
ACCTCCATATACACACAAGAGGTGCAACTATGGTCAGTGAAATTTAAACA
GACTTTCACTTGATGGGTACGAGAGACTCTCTCATTAAAAATAatacata
tatatttttgaattattgggaAAAAGTTTCAGAAAGCAATATGGATGAGG
AATTTTAAAATCACCATTCCTAAGGAACGCTTGAGGAGTAGAGAGTAACG
CTGAAAAGTAGAAGAGGAATAACGAGGAATAAAGATACCCGCGAGGAAAG
TTTCGTAGTGTCGGTATCTTGCACTTgaataaaaaatacacaatttatAA
ATACGGCTTAAGGAtagtgtatttttcaaggaagcATACAATACTGTATA
AGGATATAATAAAGTGTGGAAcgttaaaagtaaaaaaagtagaGTAACAA
AAATGGTATCATTGACATCTTATTGAGTATTGGAACTTAACGGTACACCT
CATCACGCCCACCATCACGCAAATACTCTCTCTCACCACCACTTGGCTTT
GGTATCCAAActcaaattttaggaaaaacatCTTCACCTCATATTCTTGA
TGAATTGAACTATGTAATTCAAGATTACGGGCCATAAGTTGTCTATATTT
GG Run BLAST on NCBI protein sequence of TCONS_00035179-protein >TCONS_00035179-protein ID=TCONS_00035179-protein|Name=TCONS_00035179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MNKTLANFSEVFAALYIFLMIASITGNLVCLFGLTRKYHKRRFRDHFFIS
MVICDLLRISLTGPMEIRGLMQQQVTDESFCIGFSFIMSLFEFTSISHLL
LVVMDRYICVCKPTLALKLYLQPTTIYKAILLSYLYGLFWSVLPLFGLGE
FGFQIGELQCGLKPKHDIASKVYILLVLLIAYIVPVGITIWCFFHVWKRT
KTNNNGVVTVSDESQDQKDLRKYFSSDRKQFQLILALILTFIFTWFVYDL
TMFEEIYIAQEANAYAEIVTTFIGQSSALITPLAILAFYTDLQKTFMKFL
GKKRAENTSVTKSRASTRVVPIAGSVETPSAT Run BLAST on NCBI transcript from alignment at sc0001268:40069..42220 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035179 ID=TCONS_00035179|Name=TCONS_00035179|organism=Clytia hemisphaerica|type=transcript|length=2152bp|location=Sequence derived from alignment at sc0001268:40069..42220 (Clytia hemisphaerica)
CCAAATATAGACAACTTATGGCCCGTAATCTTGAATTACATAGTTCAATT
CATCAAGAATATGAGGTGAAGatgtttttcctaaaatttgagTTTGGATA
CCAAAGCCAAGTGGTGGTGAGAGAGAGTATTTGCGTGATGGTGGGCGTGA
TGAGGTGTACCGTTAAGTTCCAATACTCAATAAGATGTCAATGATACCAT
TTTTGTTACtctactttttttacttttaacgTTCCACACTTTATTATATC
CTTATACAGTATTGTATgcttccttgaaaaatacactaTCCTTAAGCCGT
ATTTataaattgtgtattttttattcAAGTGCAAGATACCGACACTACGA
AACTTTCCTCGCGGGTATCTTTATTCCTCGTTATTCCTCTTCTACTTTTC
AGCGTTACTCTCTACTCCTCAAGCGTTCCTTAGGAATGGTGATTTTAAAA
TTCCTCATCCATATTGCTTTCTGAAACTTTTtcccaataattcaaaaata
tatatgtatTATTTTTAATGAGAGAGTCTCTCGTACCCATCAAGTGAAAG
TCTGTTTAAATTTCACTGACCATAGTTGCACCTCTTGTGTGTATATGGAG
GTTTATCCTGGAGCCCAAAAAATTTTCGTGTTTAAGGTGGATGCTATTTT
TCTGTAAGTCTGTAAGCAATGATCCTTTTGAATGAGCCTCAACACGAGTC
TTATAATTCAGCTGAAAACCCGATATCTTCATTTGCTATGAAATTTCACC
GATTATTTTGGTGGATTTACAAGTCACGGTGGTTGAATGACATCACCATT
CAATAATTTTCGTCTTTAGTATTTCTTTGGAGcctgttttgtttattttt
atgtaGCGGAGGGAGTTTCGACAGAACCGGCTATCGGTACCACCCTAGTG
CTTGCTCTACTCTTTGTCACTGATGTATTCTCCGCCCTTTTCTTTCCTAA
GAATTTCATGAATGTTTTTTGTAGATCAGTGTAAAATGCTAGAATCGCCA
ACGGTGTGATGAGAGCTGAACTTTGACCGATAAAAGTGGTGACAATCTCA
GCATAAGCATTTGCTTCTTGTGCGATATAAATTTCTTCAAACATGGTCAA
ATCATACACAAACCacgtgaaaatgaaagttaaaatGAGCGCCAGGATTA
ATTGAAACTGTTTGCGATCGCTGGAGAAATATTTTCTAAGGTCTTTTTGA
TCCTGCGATTCGTCGGAGACAGTTACAACACCattgttgttggtttttgt
CCTCTTCCAGACGTGAAAAAAGCACCATATGGTGATACCGACGGGTACGA
TATAAGCGATCAACAAAACAAGGAGGATATACACCTTACTTGCTATATCA
TGTTTCGGTTTCAATCCACACTGCAACTCTCCGATCTGGAAACCAAATTC
TCCAAGACCAAACAAAGGCAATACAGACCAAAATAAGCCGTATAAATAGG
ATAACAAAATTGCTTTGTAAATAGTGGTCGGTTGTAGATAGAGCTTTAAC
GCAAGGGTCGGTTTACACACACAGATGTAACGATCCATGACGACCAGTAG
TAAATGGCTTATCGATGTGAACTCGAAAAGAGACATAATGAATGAGAAAC
CAATACAAAAAGATTCATCGGTAACCTGTTGTTGCATTAACCCTCTGATT
TCCATTGGACCAGTGAGGGAGATTCTCAACAAATCACAAATCACCATGGA
GATAAAGAAGTGATCTCTAAATCTTCGCTTGTGGTATTTTCTAGTCAAtc
caaacaaacaaaccaaATTGCCAGTGATGGAAGCAATCATTAGAAAGATG
TATAAAGCAGCGAACACTTCGCTGAAGTTCGCTAGTGTTTTGTTCATTTT
GGTTTTCTTTTACTCTAAATGGAAAGAAATAAACTTTATGAAATCCTAAA
CTGTCAACTCAACAAGCTTCTGTAAAGTGCGTTGAGGCTGGATGCTAAAC
CTTCAAATTGAGTTTATTTTCAATGTCGCACTGTCGTATGAATGATTTGA
GATTGAAAAACTCGTATGAAAATTATTTCACCAATATCTACTGGTTGCAT
CCAATGAGTTATGGCCACTTGTCCCAACCCTTCCAACCCTGTCCGAGTGG
TCTTCACGCAAACGTTGGATGGAAAATACCGTTTATTAAAGGGGGAAAGC
GC Coding sequence (CDS) from alignment at sc0001268:40069..42220 >TCONS_00035179 ID=TCONS_00035179|Name=TCONS_00035179|organism=Clytia hemisphaerica|type=CDS|length=999bp|location=Sequence derived from alignment at sc0001268:40069..42220 (Clytia hemisphaerica)
ttatgtaGCGGAGGGAGTTTCGACAGAACCGGCTATCGGTACCACCCTAG
TGCTTGCTCTACTCTTTGTCACTGATGTATTCTCCGCCCTTTTCTTTCCT
AAGAATTTCATGAATGTTTTTTGTAGATCAGTGTAAAATGCTAGAATCGC
CAACGGTGTGATGAGAGCTGAACTTTGACCGATAAAAGTGGTGACAATCT
CAGCATAAGCATTTGCTTCTTGTGCGATATAAATTTCTTCAAACATGGTC
AAATCATACACAAACCacgtgaaaatgaaagttaaaatGAGCGCCAGGAT
TAATTGAAACTGTTTGCGATCGCTGGAGAAATATTTTCTAAGGTCTTTTT
GATCCTGCGATTCGTCGGAGACAGTTACAACACCattgttgttggttttt
gtCCTCTTCCAGACGTGAAAAAAGCACCATATGGTGATACCGACGGGTAC
GATATAAGCGATCAACAAAACAAGGAGGATATACACCTTACTTGCTATAT
CATGTTTCGGTTTCAATCCACACTGCAACTCTCCGATCTGGAAACCAAAT
TCTCCAAGACCAAACAAAGGCAATACAGACCAAAATAAGCCGTATAAATA
GGATAACAAAATTGCTTTGTAAATAGTGGTCGGTTGTAGATAGAGCTTTA
ACGCAAGGGTCGGTTTACACACACAGATGTAACGATCCATGACGACCAGT
AGTAAATGGCTTATCGATGTGAACTCGAAAAGAGACATAATGAATGAGAA
ACCAATACAAAAAGATTCATCGGTAACCTGTTGTTGCATTAACCCTCTGA
TTTCCATTGGACCAGTGAGGGAGATTCTCAACAAATCACAAATCACCATG
GAGATAAAGAAGTGATCTCTAAATCTTCGCTTGTGGTATTTTCTAGTCAA
tccaaacaaacaaaccaaATTGCCAGTGATGGAAGCAATCATTAGAAAGA
TGTATAAAGCAGCGAACACTTCGCTGAAGTTCGCTAGTGTTTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035179-exon-sc0001268-1491911889:40069..42220 | TCONS_00035179-exon-sc0001268-1491911889:40069..42220 | Clytia hemisphaerica | exon |
| TCONS_00035179-exon-sc0001268-1510915933:40069..42220 | TCONS_00035179-exon-sc0001268-1510915933:40069..42220 | Clytia hemisphaerica | exon |
| TCONS_00035179-exon-sc0001268-1575043694:40069..42220 | TCONS_00035179-exon-sc0001268-1575043694:40069..42220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001268 | supercontig | sc0001268:40069..42220 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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