TCONS_00035175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035175
Unique NameTCONS_00035175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035175 ID=TCONS_00035175|Name=TCONS_00035175|organism=Clytia hemisphaerica|type=transcript|length=1056bp
gaggTAGTAAAGAATGCCTAcaataaatttgaataaaagaacaatgtttt
cttggaataagaagaaaaaagagCTTGGTTTTGAATTTAAATCTCATCAA
TTTGCAAACTATGTTCTACTACAAAGATTTGATCGGACCGTGTCTTCCTC
TAGTGAGAGAAGAAATACTTGCtgatgaaattttttatgtAGTGTCGGAT
AAAAGTGTAAATGTAACTGGCTGGTGTTGGCTGTGTTTCAGATCCTCGTG
ACAGTGAAACAACAACAAATCATAATACGAGTAGTGTTAGTGGTATTAAC
TTACTGGATGAGACTAATCACCAACAatAGTTGAATGTGACTCCAAATTG
TGTTGCTGATTCTAATCCACCTGTAACTGGAACATTTCAATCTTTATTGG
ATTCAACATCCATGGGAAAAAGGAAAGATCACAGTTTTATCATCAGTGAC
GACAACttatttcaattcttcaaaGTACTACACCACAATAAGAAATGATa
actttctttcaaatgttgCAAAAATTTGACGTAAAATAACGaaGCTTAGA
AATCGGAAGAAGGTGCTAAAAGCGAAGACGACTATCTCTGACGTCGATAA
AATGAAAAGGAGGACTCGAGGTTTAACCACTGAGATGGCGTTTGCAAAAA
TGTGATAAGTACTTTGAAGCGTTGGataaaaagacaatgacaaaGCGATC
GATAAAAGCGCGAAGACAAACTGTTATACGCAAGATGGGGCCTTTCAGTG
GAAGGGCAGCACCTGAGGTTGACGAATCAAATGCATGgacaataataaat
aaataaacctTTAACCTATTCATTTTGTTATAATTATGTtactattttag
tttaatgtttcttttgtttgagattttctttagcttgatatttttattta
tttcagttAATTAATAGCCCCTCTTCCCCTGGGCAGTAGACATGCTTGTA
AGAAAATCAATATGGAAAGGCTTTTTAGCCACTTGTTGaatacacgtttg
tttttttttaagaaactagttttaccaagcagcctcaatgtttcttaaga
aattgg
Run BLAST on NCBI

transcript from alignment at sc0001268:62053..64684-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035175 ID=TCONS_00035175|Name=TCONS_00035175|organism=Clytia hemisphaerica|type=transcript|length=2632bp|location=Sequence derived from alignment at sc0001268:62053..64684- (Clytia hemisphaerica)
GAGGTAGTAAAGAATGCCTACAATAAATTTGAATAAAAGAACAATGTTTT
CTTGGAATAAGAAGAAAAAAGAGCTTGGTTTTGAATTTAAATCTCATCAA
TTTGCAAACTATGTTCTACTACAAAGATTTGATCGGACCGTGTCTTCCTC
TAGTGAGAGAAGAAATACTTGCTGATGAAATTTTTTATGTAGTGTCGGAT
AAAAGTGTAAATGTAACTGGCTGGTGTTGGCTGTGTTTCAGATCCTCGTG
ACAGTGAAACAACAACAAATCATAATACGAGTAGTGTTAGTGGTATTAAC
TTACTGGATGAGACTAATCACCAACAGTAAGTTGTTTTAATTGATTGTTT
GATGGTGTGTGCTTGTCTTAAATCTGTTAGTTGAAAAAATCTCTGCGTTA
AAACATGAACTCTTTTCCTGCTTAAACTTGAATTTTTTTGTTTTAAATCA
ACTTCTACGAGCCTGATTACATAGTTCAATTGTTTATCGATTTATATTTA
TTTTTTCTTAATCATTTATCGATCGAGAATATCTGAGATAAAAACCTCTT
GTACTTTTAAATTCTGAAATTACGAAAAACTTAATCTGTTAATTGATCTC
TTGAGCTAGTAGAAAAGTTTGCCTTATCTATCAAGTTTATGGTAGTCGAG
AACGAGGGGTGGATCATCTGGAAAATTTGTACAAGATTTTGTTGATTTTA
TGTGATGTGTTATTTTTTTGTGATTTATCTGTGATGTTTTGCGAATTTTA
ACGTTTTTGTGATTTTAGAATTTTTTTCCAGTGGTTTACACCTCGATCTA
GAATTCTCCTTATCTTACACTCATCGTATTATTCAAAAGTAAAGATGCAG
GATTCTAATGAGTTTAATTTAATTATTTTTAAGATAGTTGAATGTGACTC
CAAATTGTGTTGCTGATTCTAATCCACCTGTAACTGGTATGTTTGGAATA
ACAATTTTTCCTTCACTCAGCATTGATAAATAACTCACCATTGATAACTC
AGCATTCTTTCTGTAAATAATTATTTTGGCCTTTCATTTGCATTTTAGGT
GCCTGTGATATTGAATTTTCCTAAACTCGCATAAAATTTAGATTTCTTAA
TGATCGTATTGATGTAACAAATTTGTTGGATGTGTATATTTCTGAATATA
TATTTTTTAATATATAGGAACATTTCAATCTTTATTGGATTCAACATCCA
TGGGAAAAAGGAAAGATCACAGTTTTATGTAAGTGAATACAAATGAAGTC
ATTTTTAAAATATTAGAAGAATAGTTATAATTCCATTTCATAAAAGAGTA
ATTGAGATTTATTTGTTGTATTTATTGTTTTTATTATAAACAGAGAATGG
TTGAGATATCTCTTTTTTATTTTCATTTTTTTATATTGCTGCCTTTGAAT
TAATATGCAAATGGTTGAATAGAAAAGGAATTTTTTGATTTAGTGAGAGG
AAATTAATTAGATGTTAGTAATTTTGTCTCATCTTCAGTTATCTTCAAAA
AGTACCATAATGAATATTCATTCCCTCTTTTTCAATCTCAGCATCAGTGA
CGACAACTTATTTCAATTCTTCAAAGTACTACACCACAATAAGAAATGAT
AACTTTCTTTCAAATGTTGCAAAAATTTGACGTAAAATAACGGTAAGAGG
CCTTATGCTTAAAATCTATTAACTATACTGTGTTCTTTCATTTTCATATA
AACAATAGATTGATGTAATGACGTGGCCATCCATCTTTGTGGGCATAATA
TCACAATAGCTGAAGCTTTCTGTATTGAAACCGTTATAACACGTATTTGA
AAAACATATATGTTAGGCTTTTTTATAGATTTACCGGGGGTCTTACTTGA
AAGTTGTTGTGCGCAAAAATTTGCCTGCAATGATAATAGCTGAACACTTT
GAAGAAGTTCGGAAAACATTAAATCACAGATTTCGTTCAATAGTACTTTA
TCTTTTCAACCTGAATTACTTTTCAACTTTTACAGTATTACTTCAATCAT
TTTTGTCTTTTTCCTTTTTTCAGAAGCTTAGAAATCGGAAGAAGGTNTTT
CAACCTGCATTACTTTTCAGCTTTTACAGTATTACTTCAATCATTTTTGT
CTTTTTCCTTTTTTCAGAAGCTTAGAAATCGGAAGAAGGTGCTAAAAGCG
AAGACGACTATCTCTGACGTCGATAAAATGAAAAGGAGGACTCGAGGTTT
AACCACTGAGATGGCGTTTGCAAAAATGTGATAAGTACTTTGAAGCGTTG
GATAAAAAGACAATGACAAAGCGATCGATAAAAGCGCGAAGACAAACTGT
TATACGCAAGATGGGGCCTTTCAGTGGAAGGGCAGCACCTGAGGTTGACG
AATCAAATGCATGGACAATAATAAATAAATAAACCTTTAACCTATTCATT
TTGTTATAATTATGTTACTATTTTAGTTTAATGTTTCTTTTGTTTGAGAT
TTTCTTTAGCTTGATATTTTTATTTATTTCAGTTAATTAATAGCCCCTCT
TCCCCTGGGCAGTAGACATGCTTGTAAGAAAATCAATATGGAAAGGCTTT
TTAGCCACTTGTTGAATACACGTTTGTTTTTTTTTAAGAAACTAGTTTTA
CCAAGCAGCCTCAATGTTTCTTAAGAAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020516XLOC_020516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035175-exon-sc0001268-1575043694:64359..64684TCONS_00035175-exon-sc0001268-1575043694:64359..64684Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1575043694:63749..63801TCONS_00035175-exon-sc0001268-1575043694:63749..63801Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1575043694:63457..63517TCONS_00035175-exon-sc0001268-1575043694:63457..63517Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1575043694:63043..63143TCONS_00035175-exon-sc0001268-1575043694:63043..63143Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1575043694:62641..62661TCONS_00035175-exon-sc0001268-1575043694:62641..62661Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1575043694:62053..62546TCONS_00035175-exon-sc0001268-1575043694:62053..62546Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1510915933:64359..64684TCONS_00035175-exon-sc0001268-1510915933:64359..64684Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1510915933:63749..63801TCONS_00035175-exon-sc0001268-1510915933:63749..63801Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1510915933:63457..63517TCONS_00035175-exon-sc0001268-1510915933:63457..63517Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1510915933:63043..63143TCONS_00035175-exon-sc0001268-1510915933:63043..63143Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1510915933:62641..62661TCONS_00035175-exon-sc0001268-1510915933:62641..62661Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1510915933:62053..62546TCONS_00035175-exon-sc0001268-1510915933:62053..62546Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1491911889:64359..64684TCONS_00035175-exon-sc0001268-1491911889:64359..64684Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1491911889:63749..63801TCONS_00035175-exon-sc0001268-1491911889:63749..63801Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1491911889:63457..63517TCONS_00035175-exon-sc0001268-1491911889:63457..63517Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1491911889:63043..63143TCONS_00035175-exon-sc0001268-1491911889:63043..63143Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1491911889:62641..62661TCONS_00035175-exon-sc0001268-1491911889:62641..62661Clytia hemisphaericaexon
TCONS_00035175-exon-sc0001268-1491911889:62053..62546TCONS_00035175-exon-sc0001268-1491911889:62053..62546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001268supercontigsc0001268:62053..64684 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.16245	1.64673	1.61629	1.58902	0.294225	0.279117	0.404696	0.279622	0.501819	0.101549	0.159226	0.0939944	0.359282	0	0.354523	0	0.317708	0	3.82967e-05	0.0465919	0.675363	1.05281	0.386429	0.555039	0.289279	0.166257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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