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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035171 ID=TCONS_00035171|Name=TCONS_00035171|organism=Clytia hemisphaerica|type=transcript|length=3312bpRun BLAST on NCBI protein sequence of TCONS_00035171-protein >TCONS_00035171-protein ID=TCONS_00035171-protein|Name=TCONS_00035171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp MSAMTSHVNRLFSDSSVPLEIENDDFCQEEIPDRKSFSRVRKLSKRLSATRun BLAST on NCBI transcript from alignment at sc0001268:13120..30749+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035171 ID=TCONS_00035171|Name=TCONS_00035171|organism=Clytia hemisphaerica|type=transcript|length=17630bp|location=Sequence derived from alignment at sc0001268:13120..30749+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001268:13120..30749+ >TCONS_00035171 ID=TCONS_00035171|Name=TCONS_00035171|organism=Clytia hemisphaerica|type=CDS|length=25755bp|location=Sequence derived from alignment at sc0001268:13120..30749+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035171 vs. Swiss-Prot (Human)
Match: CDK14 (Cyclin-dependent kinase 14 OS=Homo sapiens GN=CDK14 PE=1 SV=3) HSP 1 Score: 397.512 bits (1020), Expect = 3.810e-126 Identity = 197/333 (59.16%), Postives = 244/333 (73.27%), Query Frame = 2
Query: 851 YGKLEHYTKLEQLGEGSYATVYKGVSKKNNIFVALKEITLQEEEGIPFTAIREASLLKDLKHSNIVRLHDIIPSKEHLVLVFEYLHTDLCIYLEERPFGVQSSNAKLLLFQLLRGLNYIHKKKILHRDIKPQNVLLSNRGDLKLADFGLARAKSVPSRTYTHEIVTLWYRPPDVLLGSTHYTTSLDIWGVGCIFVEMISGFPLFPGVKSARDQLSKIFKVCGTPGLDEWPVTKS--EYKHDSFEVYTKLPLSHQAPRIKTMPYAEGLAEIMLQINPRERISAEAGMKHIFFADLPKGVHSLASGVSIFTVPGVRMAED--NKTRDKPKSKSFG 1837
+GK + Y KLE+LGEGSYATVYKG SK N VALK I LQEEEG PFTAIREASLLK LKH+NIV LHDII +KE L LVFEY+HTDLC Y+++ P G+ N KL LFQLLRGL+YIH++ ILHRD+KPQN+L+S+ G+LKLADFGLARAKSVPS TY++E+VTLWYRPPDVLLGST Y+T LD+WGVGCIFVEMI G FPG+K +DQL +IF V GTP D WP S +K + F +Y+ L ++ + +AE LA +LQ +P+ R+SA+A + H +F+DLP + L SIFTVP VR+ + R K+ S+G
Sbjct: 129 FGKADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPDNVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSSKNLRQAWNKLSYVNHAEDLASKLLQCSPKNRLSAQAALSHEYFSDLPPRLWELTDMSSIFTVPNVRLQPEAGESMRAFGKNNSYG 461 The following BLAST results are available for this feature:
BLAST of TCONS_00035171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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