TCONS_00035168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035168
Unique NameTCONS_00035168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035168 ID=TCONS_00035168|Name=TCONS_00035168|organism=Clytia hemisphaerica|type=transcript|length=473bp
gaaCGGTTATCGAGTCTTCGAAcggttgttaagaaagtgattgaagactc
acaatttttttgaaattttggtactcgaaattcgattgttaatcgataaa
TAGTCGTTCGATTANTTATGTCACGTTTCAGTTTGTTGTGAAGTACTTTT
GTTAGAGATTTGAGAAGAAAAAGCTTTGTTGATAAAAAGAATGatgagtt
tgttttttttcaaaagctttttttaattgATTGCTTTCAATCAATAAAAC
AAGTTCTCACTTATCAAACAAATTATTGTAATCGATTAACTTTTAATGAG
CCTGTAAATGAAACAATTGTCCTTTGGGAATTCATTTGGGATAGTTTGTT
GAGAAGAGACGTCAGGTTGAAAAACATTATTATTGCATCactaaatttgg
atttttgttcCGGTAcacgttttgtttttattagaacccagtttataaga
acattgaggctgaaatccgtcga
Run BLAST on NCBI

transcript from alignment at sc0001265:60984..61456

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035168 ID=TCONS_00035168|Name=TCONS_00035168|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at sc0001265:60984..61456 (Clytia hemisphaerica)
tcgacggatttcagcctcaatgttcttataaactgggttctaataaaaac
aaaacgtgTACCGgaacaaaaatccaaatttagtGATGCAATAATAATGT
TTTTCAACCTGACGTCTCTTCTCAACAAACTATCCCAAATGAATTCCCAA
AGGACAATTGTTTCATTTACAGGCTCATTAAAAGTTAATCGATTACAATA
ATTTGTTTGATAAGTGAGAACTTGTTTTATTGATTGAAAGCAATcaatta
aaaaaagcttttgaaaaaaaacaaactcatCATTCTTTTTATCAACAAAG
CTTTTTCTTCTCAAATCTCTAACAAAAGTACTTCACAACAAACTGAAACG
TGACATAANTAATCGAACGACTAtttatcgattaacaatcgaatttcgag
taccaaaatttcaaaaaaattgtgagtcttcaatcactttcttaacaacc
gTTCGAAGACTCGATAACCGttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020512XLOC_020512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035168-exon-sc0001265-1491911889:60984..61456TCONS_00035168-exon-sc0001265-1491911889:60984..61456Clytia hemisphaericaexon
TCONS_00035168-exon-sc0001265-1510915933:60984..61456TCONS_00035168-exon-sc0001265-1510915933:60984..61456Clytia hemisphaericaexon
TCONS_00035168-exon-sc0001265-1575043694:60984..61456TCONS_00035168-exon-sc0001265-1575043694:60984..61456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001265supercontigsc0001265:60984..61456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16027	1.04838	2.52477	1.78635	0.362607	0.286703	0.172774	0	0	0	0	0.537	0.19522	0.0935811	0	0.168202	0	0	0.857128	0	0.260713	0.381698	0	0.14143	0	0	0.184789	0.196657	0.150184	0.151968
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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