TCONS_00035167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035167
Unique NameTCONS_00035167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035167 ID=TCONS_00035167|Name=TCONS_00035167|organism=Clytia hemisphaerica|type=transcript|length=718bp
GTTTTTGATTTCTTAAGATAGCGAAACAGTTACAAATGTCCAGACGGTCG
TAATCGATAAAATCGATCATCGATTAAAATCANTCCCCTTAAAGCGCaca
gacactcgcgtgtgttccactacggattttttcatatttcgttttaaaag
cctactcggtgtgaaagagaaatcgtgtattttttcattaactcaaatca
aatgactttggaggttcggtgaaatggtggccgaaatGCCGTCCTATGTT
TTGTTAGATAgccccaagttagagcagttaacGGTATCGATTAAAATCCa
taatcgatagctaatcgatattgacaatttttttgattcatagaggccca
tgtacTCGCACGGTTGCCTGAGAAATTGTATAGCATTATTGTTGTTATTA
TGAATAAAAGTGAGGTGTCACAGGAGGGAGTGATGACAGTTTAGCTTTTA
TGTTTTCAATTATTTGTTGTAACATCCCTTTTTTGACGTTGGTTTGATGG
ATCTGCAGGGCTAATTTGTCCTTTCTTCTTGGCTGATTTTAACTTTAACT
TTGCCAATTCAATCATTGGGACTGAGCCTTTACTAGAACCTTTATGTCAT
ATCTGGAGTTGTTGTGTGCAGGTTagttccaaaattttttccccAATTTC
CTTGAAGTGCTTCATCTGATCCATGACTTCTTgagtaaaaatttttgaat
aagtTTAAGAAGTATACA
Run BLAST on NCBI

transcript from alignment at sc0001265:59629..60346

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035167 ID=TCONS_00035167|Name=TCONS_00035167|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at sc0001265:59629..60346 (Clytia hemisphaerica)
TGTATACTTCTTAAacttattcaaaaatttttactcAAGAAGTCATGGAT
CAGATGAAGCACTTCAAGGAAATTggggaaaaaattttggaactAACCTG
CACACAACAACTCCAGATATGACATAAAGGTTCTAGTAAAGGCTCAGTCC
CAATGATTGAATTGGCAAAGTTAAAGTTAAAATCAGCCAAGAAGAAAGGA
CAAATTAGCCCTGCAGATCCATCAAACCAACGTCAAAAAAGGGATGTTAC
AACAAATAATTGAAAACATAAAAGCTAAACTGTCATCACTCCCTCCTGTG
ACACCTCACTTTTATTCATAATAACAACAATAATGCTATACAATTTCTCA
GGCAACCGTGCGAgtacatgggcctctatgaatcaaaaaaattgtcaata
tcgattagctatcgattatGGATTTTAATCGATACCgttaactgctctaa
cttggggcTATCTAACAAAACATAGGACGGCatttcggccaccatttcac
cgaacctccaaagtcatttgatttgagttaatgaaaaaatacacgatttc
tctttcacaccgagtaggcttttaaaacgaaatatgaaaaaatccgtagt
ggaacacacgcgagtgtctgtGCGCTTTAAGGGGANTGATTTTAATCGAT
GATCGATTTTATCGATTACGACCGTCTGGACATTTGTAACTGTTTCGCTA
TCTTAAGAAATCAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020511XLOC_020511Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035167-exon-sc0001265-1491911889:59629..60346TCONS_00035167-exon-sc0001265-1491911889:59629..60346Clytia hemisphaericaexon
TCONS_00035167-exon-sc0001265-1510915933:59629..60346TCONS_00035167-exon-sc0001265-1510915933:59629..60346Clytia hemisphaericaexon
TCONS_00035167-exon-sc0001265-1575043694:59629..60346TCONS_00035167-exon-sc0001265-1575043694:59629..60346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001265supercontigsc0001265:59629..60346 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58926	1.40445	2.46816	1.57593	0.293583	0.326953	0.0949981	0.0867838	0.187259	0.232265	0.28994	0	0.0504974	0	0.174925	0.14583	0.161536	0.0547618	0.341523	0.257391	0.0729622	0	0	0	0	0.0709931	0.107558	0	0.0813237	0.0897851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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