TCONS_00035160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035160
Unique NameTCONS_00035160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035160 ID=TCONS_00035160|Name=TCONS_00035160|organism=Clytia hemisphaerica|type=transcript|length=700bp
TAATAATGTAACCCCCTGACCAGATGCCAGATTCGCTTtacgaaatcaaa
acattcaaaaccagTTTTCAATTTTGTGGTTTCTTTGACTGTTTGAGTGT
TAAAGTTGGAGTGGTGGAAGTGATAAGCTGATCTGGAGTCTGgtgtaaga
aaaatgaaaaggagAAACATAATTTAACCACAAAATCATGATGTGTCGTG
ATGCTGTATATCATAACATAAACTCCACGAAACCATTTTTGGTCAAGTAA
ATCAAGGGTTAAATGACTTTATCAATCACTGAAACTGTACAACTCTCTGC
AccataaagaaaaaatccagaTAGCCTACACTATTTGATCTGACAGACAA
AACAAGAAAGgGAACACTATGAACTGACACGATTTTTGAAGAAAGCGGAT
TGACTTATGATCCTGAAATCGAGTTATTTGGCAAGTGACGCTTACtgatt
tctttgatgttttgagTGTTTGTTTTAAGAGCTAAAAGTTGCTTGAAATA
AGATACTGATCTTGGAATTTTATTAAAGAAAGTTTGACCAAAGTTTAAGG
CTTATTTGACTAATACTCTTAAGTTTTTGCCCTCACACATTGTATACATA
GCATTTgtattttttctgtatttttttaccttgtaatttagattatctaa
atattaaatttactttatcttatttaatatgaatttttagtttttctaaa
Run BLAST on NCBI

transcript from alignment at sc0001265:12242..14049-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035160 ID=TCONS_00035160|Name=TCONS_00035160|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at sc0001265:12242..14049- (Clytia hemisphaerica)
TAATAATGTAACCCCCTGACCAGATGCCAGATTCGCTTTACGAAATCAAA
ACATTCAAAACCAGTTTTCAATTTTGTGGTTTCTTTGACTGTTTGAGTGT
TAAAGTTGGAGTGGTGGAAGTGATAAGCTGATCTGGAGTCTGGTGTAAGA
AAAATGAAAAGGAGAAACATAATTTAACCACAAAATCATGATGTGTAAGT
ATTACTTCACCCATTTATATCAACAAATGAGTCTAGTTAGTGCTATTTCT
ATCTATCCTAAACTAAGGGTCGATCAGACAACACTAATTTTAAGGATTTT
TTTGTATCTTTTTGTTTTTTTAATTTGCCTTTGCGATTTTTCTTGTCATT
CACCCAGATCAGGGGTATATTTTCTAACTTTTTTTTACTTTTTTGTAAAT
GTTGTTTTCCTTTGCTGTTCATTTGTTGTCAAAATGTTTGACTCTTTTGT
CTTTCTACACTACAGGTCGTGATGCTGTATATCATAACATAAACTCCACG
AAACCATTTTTGGTCAAGTAAATCAAGGGTAAGGCAAGGGAATTATCTGC
TTATTTGTATGCCACTTCTTTTAAAAGAACTATAAGCTGGATAATTTGCT
ATATATGTAGGTATTTCAAGTTTTTCTTTTGGGCAATGAAATGTTTTTGG
CAAAGCTTTCTTCTCAATTTTTGACTATTCTGAGATATGATTGAAATGAT
TATCTTTGTCTGTGAATGGATGATGGAGCAATATACATCAGTTTTGTTTA
TTTTTATACAGGTTAAATGACTTTATCAATCACTGAAACTGTACAACTCT
CTGCACCATAAAGAAAAAATCCAGATAGCCTACACTATTTGATCTGACAG
ACAAAACAAGAAAGGTATTTATTCATCACAGAATTCAATTTAATTTTTTC
AACTATTCCTAGTCCATTTGATTTACAAGGTAACCTTTTCTCTCGAAACT
AGAGATCAAATGTATATAAAGTGATTTTACTAAACTGTTGTTTTATATCC
AATGTTTTGTTAATTTCCCGGAGGGGGGGGGGGCACTTAGCCAAAATTGG
GTATGGGGACGTTCTGCTGGGCAGGGTCCCTTTTTTACACTCTGAAGATA
TCTAACAGGGTGCAAAATTTTCTGATTTTCAAGATGAGACTCATAAACTC
AGAGTTTATGATAGGGTCGATTATTTTGATTATTTTGGACAATTTTCAGG
GTGGAAATGAGAAAATTTAAAAAGTTTTCGGCTACTTTTATTAATTTTTG
CCACTGCAGAGTGAAAATGGGAGATCTTTTAATTTTTTGTTCTGACAGGG
TTCCAATTTTGCCAAAAGTTCACATCTGACAGGATCAACTTTTCAAACTC
CAGTGGTACTTCCCCGTCGGCCGTCAAGGTCAGAGCCCTTGGGTTAATTT
CGTGATAAGATTCATATTTACTTTTGATAGTTTGACCATATTATTATCGA
TTTTTAATTTTTCTTCAGGGAACACTATGAACTGACACGATTTTTGAAGA
AAGCGGATTGACTTATGATCCTGAAATCGAGTTATTTGGCAAGTGACGCT
TACTGATTTCTTTGATGTTTTGAGTGTTTGTTTTAAGAGCTAAAAGTTGC
TTGAAATAAGATACTGATCTTGGAATTTTATTAAAGAAAGTTTGACCAAA
GTTTAAGGCTTATTTGACTAATACTCTTAAGTTTTTGCCCTCACACATTG
TATACATAGCATTTGTATTTTTTCTGTATTTTTTTACCTTGTAATTTAGA
TTATCTAAATATTAAATTTACTTTATCTTATTTAATATGAATTTTTAGTT
TTTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020504XLOC_020504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035160-exon-sc0001265-1575043694:13856..14049TCONS_00035160-exon-sc0001265-1575043694:13856..14049Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1575043694:13522..13584TCONS_00035160-exon-sc0001265-1575043694:13522..13584Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1575043694:13186..13288TCONS_00035160-exon-sc0001265-1575043694:13186..13288Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1575043694:12242..12581TCONS_00035160-exon-sc0001265-1575043694:12242..12581Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1510915933:13856..14049TCONS_00035160-exon-sc0001265-1510915933:13856..14049Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1510915933:13522..13584TCONS_00035160-exon-sc0001265-1510915933:13522..13584Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1510915933:13186..13288TCONS_00035160-exon-sc0001265-1510915933:13186..13288Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1510915933:12242..12581TCONS_00035160-exon-sc0001265-1510915933:12242..12581Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1491911889:13856..14049TCONS_00035160-exon-sc0001265-1491911889:13856..14049Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1491911889:13522..13584TCONS_00035160-exon-sc0001265-1491911889:13522..13584Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1491911889:13186..13288TCONS_00035160-exon-sc0001265-1491911889:13186..13288Clytia hemisphaericaexon
TCONS_00035160-exon-sc0001265-1491911889:12242..12581TCONS_00035160-exon-sc0001265-1491911889:12242..12581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001265supercontigsc0001265:12242..14049 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158171	0.164239	0	0.177294	1.32408	0.323082	0.39783	0.45478	0.200535	0.0917543	0.239255	0.268566	0.357445	0.265218	0.775224	0.770945	1.01791	1.54889	1.13395	0.582352	2.3698	3.47704	1.46571	1.94689	0.319354	0.0740295	1.94097	2.03933	2.53374	1.55164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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