TCONS_00035159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035159
Unique NameTCONS_00035159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035159 ID=TCONS_00035159|Name=TCONS_00035159|organism=Clytia hemisphaerica|type=transcript|length=844bp
ttttcaaaaattttagcgCTTTTACAACTGAAAACCATCAGTCTCACTGC
ACTGCTAATAGGCAAGTATGCCTTGCACAAAATCGGGCACAAAATCAAAC
ATTGACAATTTACTGGCGAGTAAATCTTGACTTAACTTAACTCAGAACTA
CTacgtttttgaataaaataccCTAGTTGTTTTAGAAAGCTGAGGCCGAG
AGCTTTACAACCGTACTAAAGTTTTTGGTCAAAAGCCATTTTTAGAGTCA
AATTATCGttatttaaaaattgatttttatcgaaaaaaaatgggaaaaaa
cgCCACTTTCAAAAATCAGTGCGCTGTCGAAGGGTTAATAGAAAATGGAA
CATACAGGAGCATCCGGCGACCTATATCGGCGACATATCTCTGCTCTTCG
ACCATAGTTAACCTAGCTTTTTGGATCTGTTGTTCTGAATACTTTGGAAT
CCTTACTCCTACAAATATCTATGTGCTGTTCTCTTAAAATGTCAAATTAA
ATTTAGGAACCCTTCTCATAGATATTTGAAACTGCTGTTCAACTAAAATC
TACTTCCTTCTCCTAAAAATATCAATTCTGCAGTTCTGTACTTCCTCCGC
TTTTCTCATCTGCTGTTCTACCAGGTTCTACCCTTGTTCATTCTCTTATC
TATTTACCACTTGCTGActtattttgttgaaaatttatcTGTTAGTGTTT
TGCCATTTTGCCTGACCTAGAAAATACAATGTGCTGTTGTTCATTGAATA
TTTACGTGATCatctaaaaattattatttgatGATACAGGATGATATCCT
TCATCCAAAAAATACTACCTGCTGTTCATTGATGATCTCTTCTC
Run BLAST on NCBI

transcript from alignment at sc0001262:70783..71626

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035159 ID=TCONS_00035159|Name=TCONS_00035159|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0001262:70783..71626 (Clytia hemisphaerica)
GAGAAGAGATCATCAATGAACAGCAGGTAGTATTTTTTGGATGAAGGATA
TCATCCTGTATCatcaaataataatttttagatGATCACGTAAATATTCA
ATGAACAACAGCACATTGTATTTTCTAGGTCAGGCAAAATGGCAAAACAC
TAACAgataaattttcaacaaaataagTCAGCAAGTGGTAAATAGATAAG
AGAATGAACAAGGGTAGAACCTGGTAGAACAGCAGATGAGAAAAGCGGAG
GAAGTACAGAACTGCAGAATTGATATTTTTAGGAGAAGGAAGTAGATTTT
AGTTGAACAGCAGTTTCAAATATCTATGAGAAGGGTTCCTAAATTTAATT
TGACATTTTAAGAGAACAGCACATAGATATTTGTAGGAGTAAGGATTCCA
AAGTATTCAGAACAACAGATCCAAAAAGCTAGGTTAACTATGGTCGAAGA
GCAGAGATATGTCGCCGATATAGGTCGCCGGATGCTCCTGTATGTTCCAT
TTTCTATTAACCCTTCGACAGCGCACTGATTTTTGAAAGTGGcgtttttt
cccattttttttcgataaaaatcaatttttaaataaCGATAATTTGACTC
TAAAAATGGCTTTTGACCAAAAACTTTAGTACGGTTGTAAAGCTCTCGGC
CTCAGCTTTCTAAAACAACTAGggtattttattcaaaaacgtAGTAGTTC
TGAGTTAAGTTAAGTCAAGATTTACTCGCCAGTAAATTGTCAATGTTTGA
TTTTGTGCCCGATTTTGTGCAAGGCATACTTGCCTATTAGCAGTGCAGTG
AGACTGATGGTTTTCAGTTGTAAAAGcgctaaaatttttgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020503XLOC_020503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035159-exon-sc0001262-1491911889:70783..71626TCONS_00035159-exon-sc0001262-1491911889:70783..71626Clytia hemisphaericaexon
TCONS_00035159-exon-sc0001262-1510915933:70783..71626TCONS_00035159-exon-sc0001262-1510915933:70783..71626Clytia hemisphaericaexon
TCONS_00035159-exon-sc0001262-1575043694:70783..71626TCONS_00035159-exon-sc0001262-1575043694:70783..71626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001262supercontigsc0001262:70783..71626 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0558705	0.0544825	0.0632594	0	0.0753444	0.0595382	0.0718303	0.134493	0.141243	0.116635	0.113209	0.111628	0.222946	0.308709	0	0.0340459	0	0	0	0.062149	0.162056	0.0790453	0	0	0.479885	0.588893	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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