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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035155 ID=TCONS_00035155|Name=TCONS_00035155|organism=Clytia hemisphaerica|type=transcript|length=944bp
tctaggtaaaccagaccgtaaacataacaaatatcaaaatcaaaaaaaag
tttacgggctggatatccaggctatttGTACATGTGAAGTGGGTTTAGAT
GGTTCAGTCTGTAAGCACCAATACGTTGTGTGGAGTCATAAGCTTGGCAA
AGGCCGAAATTTTTTACCCTATCTAAACGCTGAAGAGAGAAAAGGATACG
CATACATCGCTATCGGAAAATCATTACCCGATTCGTATTATGAAGGTATT
CATTCGGATAATACCCAGCAAGCAAACAACCAAGCTGACAGTTATACGAC
AAATGACGAAGTTGCAATTGAAAAGATTATTATTCAAGACCAATctgaat
ttcaaagaaacagaATCGAGCAAACATCAGCCGAAGAATGCAGATCTAAT
CTgcgcaaaacaaaaaaatatttgataacCAAGATCGACTCACGAGAGAA
TGATCAATCACTTCTCAATGGAATAATGACATTCTGTGATCGTGTTCAAA
AGTATCCTACCTCCCGATTGACAAGCCTATTTCATTCATTTGGAAGCACT
ATGACAACCAGCCGTAAAATTACCGCAAACTCTATTCTAAAGAAAGCCAA
ACGTGGTAAGATTTTTGTGCAACCAGGAGCTGTTCAAAGGCGCGCATCTC
TATCAGGCTCTAGAAATGCAAGAGTTAAAGGTATGCAAGTGAAAAATAAT
CCCTTCGTTGGAAAGATTCCATCCAGAAAGAGACCACATGCCTTTTCGGA
CAACGTTAGAAATAATGTAGCAGCACAAAGCGGGAAAAACTATGAGTACC
AAAACGAAACACCTTTCAAAACGTAAATCTAAATCAGTTGGTAAGACCAA
TGAAGAATAACACTTGAGCATATTCTTTTTTATCtaagtttgttttattt
tcattgaaagaatAGCATTCGTTACGAAAATATTTACATTAAAG Run BLAST on NCBI protein sequence of TCONS_00035155-protein >TCONS_00035155-protein ID=TCONS_00035155-protein|Name=TCONS_00035155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
LGKPDRKHNKYQNQKKVYGLDIQAICTCEVGLDGSVCKHQYVVWSHKLGK
GRNFLPYLNAEERKGYAYIAIGKSLPDSYYEGIHSDNTQQANNQADSYTT
NDEVAIEKIIIQDQSEFQRNRIEQTSAEECRSNLRKTKKYLITKIDSREN
DQSLLNGIMTFCDRVQKYPTSRLTSLFHSFGSTMTTSRKITANSILKKAK
RGKIFVQPGAVQRRASLSGSRNARVKGMQVKNNPFVGKIPSRKRPHAFSD
NVRNNVAAQSGKNYEYQNETPFKT Run BLAST on NCBI transcript from alignment at sc0001262:55714..56657 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035155 ID=TCONS_00035155|Name=TCONS_00035155|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at sc0001262:55714..56657 (Clytia hemisphaerica)
CTTTAATGTAAATATTTTCGTAACGAATGCTattctttcaatgaaaataa
aacaaacttaGATAAAAAAGAATATGCTCAAGTGTTATTCTTCATTGGTC
TTACCAACTGATTTAGATTTACGTTTTGAAAGGTGTTTCGTTTTGGTACT
CATAGTTTTTCCCGCTTTGTGCTGCTACATTATTTCTAACGTTGTCCGAA
AAGGCATGTGGTCTCTTTCTGGATGGAATCTTTCCAACGAAGGGATTATT
TTTCACTTGCATACCTTTAACTCTTGCATTTCTAGAGCCTGATAGAGATG
CGCGCCTTTGAACAGCTCCTGGTTGCACAAAAATCTTACCACGTTTGGCT
TTCTTTAGAATAGAGTTTGCGGTAATTTTACGGCTGGTTGTCATAGTGCT
TCCAAATGAATGAAATAGGCTTGTCAATCGGGAGGTAGGATACTTTTGAA
CACGATCACAGAATGTCATTATTCCATTGAGAAGTGATTGATCATTCTCT
CGTGAGTCGATCTTGgttatcaaatatttttttgttttgcgcAGATTAGA
TCTGCATTCTTCGGCTGATGTTTGCTCGATtctgtttctttgaaattcag
ATTGGTCTTGAATAATAATCTTTTCAATTGCAACTTCGTCATTTGTCGTA
TAACTGTCAGCTTGGTTGTTTGCTTGCTGGGTATTATCCGAATGAATACC
TTCATAATACGAATCGGGTAATGATTTTCCGATAGCGATGTATGCGTATC
CTTTTCTCTCTTCAGCGTTTAGATAGGGTAAAAAATTTCGGCCTTTGCCA
AGCTTATGACTCCACACAACGTATTGGTGCTTACAGACTGAACCATCTAA
ACCCACTTCACATGTACaaatagcctggatatccagcccgtaaacttttt
tttgattttgatatttgttatgtttacggtctggtttacctaga Coding sequence (CDS) from alignment at sc0001262:55714..56657 >TCONS_00035155 ID=TCONS_00035155|Name=TCONS_00035155|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0001262:55714..56657 (Clytia hemisphaerica)
TTACGTTTTGAAAGGTGTTTCGTTTTGGTACTCATAGTTTTTCCCGCTTT
GTGCTGCTACATTATTTCTAACGTTGTCCGAAAAGGCATGTGGTCTCTTT
CTGGATGGAATCTTTCCAACGAAGGGATTATTTTTCACTTGCATACCTTT
AACTCTTGCATTTCTAGAGCCTGATAGAGATGCGCGCCTTTGAACAGCTC
CTGGTTGCACAAAAATCTTACCACGTTTGGCTTTCTTTAGAATAGAGTTT
GCGGTAATTTTACGGCTGGTTGTCATAGTGCTTCCAAATGAATGAAATAG
GCTTGTCAATCGGGAGGTAGGATACTTTTGAACACGATCACAGAATGTCA
TTATTCCATTGAGAAGTGATTGATCATTCTCTCGTGAGTCGATCTTGgtt
atcaaatatttttttgttttgcgcAGATTAGATCTGCATTCTTCGGCTGA
TGTTTGCTCGATtctgtttctttgaaattcagATTGGTCTTGAATAATAA
TCTTTTCAATTGCAACTTCGTCATTTGTCGTATAACTGTCAGCTTGGTTG
TTTGCTTGCTGGGTATTATCCGAATGAATACCTTCATAATACGAATCGGG
TAATGATTTTCCGATAGCGATGTATGCGTATCCTTTTCTCTCTTCAGCGT
TTAGATAGGGTAAAAAATTTCGGCCTTTGCCAAGCTTATGACTCCACACA
ACGTATTGGTGCTTACAGACTGAACCATCTAAACCCACTTCACATGTACa
aatagcctggatatccagcccgtaaacttttttttgattttgatatttgt
tatgtttacggtctggtttacctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035155-exon-sc0001262-1491911889:55714..56657 | TCONS_00035155-exon-sc0001262-1491911889:55714..56657 | Clytia hemisphaerica | exon |
| TCONS_00035155-exon-sc0001262-1510915933:55714..56657 | TCONS_00035155-exon-sc0001262-1510915933:55714..56657 | Clytia hemisphaerica | exon |
| TCONS_00035155-exon-sc0001262-1575043694:55714..56657 | TCONS_00035155-exon-sc0001262-1575043694:55714..56657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001262 | supercontig | sc0001262:55714..56657 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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