TCONS_00035154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035154
Unique NameTCONS_00035154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035154 ID=TCONS_00035154|Name=TCONS_00035154|organism=Clytia hemisphaerica|type=transcript|length=476bp
CTTGTAAAAGGGTATAAAAATAGCAAATAGTTTGTATTCATTCAAGATGC
CTCGACCGAGGAGGCTCCAAGTCAATTGGAAGGCTTTACTTGGTGCTGCT
CATGGGAAAAGAACATTGAAACTTCGTCCAAACGTAAGAAATCTTTACAC
TTGTCCTGTAAAACTGTGTCTACATGTAGATTTTAAAAGTTGCCGTGGCT
TGAGGAAGCACATAAATATTAAGCATCCATGGTATTATTATTTTGACGAG
CAACCTGTTGTGAAGCGAGAAGACATGGTTGACCTGCATTCTATACCAAA
GAGAGCCTCTACTGCTAGTAAGCCCTCATTTTCATTAGATAACGGAATCG
GTTTAGATTTCTTGACGTGGCTCGGAACATCATGTGGCAGAGGTAAAAAT
AACAGAGAATCTAGACAAATTGGTAAACGagctatgaaatattttatgca
tGCCATGGGGAATAATGAAAACGACG
Run BLAST on NCBI

protein sequence of TCONS_00035154-protein

>TCONS_00035154-protein ID=TCONS_00035154-protein|Name=TCONS_00035154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MPRPRRLQVNWKALLGAAHGKRTLKLRPNVRNLYTCPVKLCLHVDFKSCR
GLRKHINIKHPWYYYFDEQPVVKREDMVDLHSIPKRASTASKPSFSLDNG
IGLDFLTWLGTSCGRGKNNRESRQIGKRAMKYFMHAMGNNEND
Run BLAST on NCBI

transcript from alignment at sc0001262:48729..49204

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035154 ID=TCONS_00035154|Name=TCONS_00035154|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at sc0001262:48729..49204 (Clytia hemisphaerica)
CGTCGTTTTCATTATTCCCCATGGCatgcataaaatatttcatagctCGT
TTACCAATTTGTCTAGATTCTCTGTTATTTTTACCTCTGCCACATGATGT
TCCGAGCCACGTCAAGAAATCTAAACCGATTCCGTTATCTAATGAAAATG
AGGGCTTACTAGCAGTAGAGGCTCTCTTTGGTATAGAATGCAGGTCAACC
ATGTCTTCTCGCTTCACAACAGGTTGCTCGTCAAAATAATAATACCATGG
ATGCTTAATATTTATGTGCTTCCTCAAGCCACGGCAACTTTTAAAATCTA
CATGTAGACACAGTTTTACAGGACAAGTGTAAAGATTTCTTACGTTTGGA
CGAAGTTTCAATGTTCTTTTCCCATGAGCAGCACCAAGTAAAGCCTTCCA
ATTGACTTGGAGCCTCCTCGGTCGAGGCATCTTGAATGAATACAAACTAT
TTGCTATTTTTATACCCTTTTACAAG

Coding sequence (CDS) from alignment at sc0001262:48729..49204

>TCONS_00035154 ID=TCONS_00035154|Name=TCONS_00035154|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0001262:48729..49204 (Clytia hemisphaerica)
GTCGTTTTCATTATTCCCCATGGCatgcataaaatatttcatagctCGTT
TACCAATTTGTCTAGATTCTCTGTTATTTTTACCTCTGCCACATGATGTT
CCGAGCCACGTCAAGAAATCTAAACCGATTCCGTTATCTAATGAAAATGA
GGGCTTACTAGCAGTAGAGGCTCTCTTTGGTATAGAATGCAGGTCAACCA
TGTCTTCTCGCTTCACAACAGGTTGCTCGTCAAAATAATAATACCATGGA
TGCTTAATATTTATGTGCTTCCTCAAGCCACGGCAACTTTTAAAATCTAC
ATGTAGACACAGTTTTACAGGACAAGTGTAAAGATTTCTTACGTTTGGAC
GAAGTTTCAATGTTCTTTTCCCATGAGCAGCACCAAGTAAAGCCTTCCAA
TTGACTTGGAGCCTCCTCGGTCGAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020498XLOC_020498Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035154-proteinTCONS_00035154-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035154-exon-sc0001262-1491911889:48729..49204TCONS_00035154-exon-sc0001262-1491911889:48729..49204Clytia hemisphaericaexon
TCONS_00035154-exon-sc0001262-1510915933:48729..49204TCONS_00035154-exon-sc0001262-1510915933:48729..49204Clytia hemisphaericaexon
TCONS_00035154-exon-sc0001262-1575043694:48729..49204TCONS_00035154-exon-sc0001262-1575043694:48729..49204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001262supercontigsc0001262:48729..49204 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.265751	0.259149	0.601794	0.14719	0.17919	0	0.341665	0.799656	0.447886	0	0	0.442472	0.176743	0.183549	0.377255	0.161941	0.299247	0.204479	0	0.295615	0.256943	0.751967	0.304705	0.13851	1.1413	0.381969	0.182199	0	0	0.15026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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