TCONS_00035153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035153
Unique NameTCONS_00035153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035153 ID=TCONS_00035153|Name=TCONS_00035153|organism=Clytia hemisphaerica|type=transcript|length=423bp
ACCTCTTGGTTTGACTCCCTTGCACGAATCGATTTTAACACCAGACTCCA
TAACCTTTTTGCATAGCATGTTCTCGAACTTGTTTGCTGTGATATCTGGC
CAATCAAATGCCATCCAAAAACTTAGTCCCGTATCTAACTCTTCACCCTT
CTCCATTGCGGTAACACAGCTTATCAACACTTTAACTGGAACAATATCCT
TGAATATATTCTCCAAATCTTGCCTTCTTGTAAACATATCCGAATAATTC
TCCTCCTTCCACAGCACTCTTATTGCAAGAACATTATAACTatccacaat
ttttgaaatgaCATAAGTTTTCAAAGCCCTCTGTAGAGCAACTTCTCTAA
ATGATTTATTcggtttgaattttttatttgcaTTCTTTTTGGCAGCAACA
TTTTGACGAAGAGTGGTTCGCTC
Run BLAST on NCBI

protein sequence of TCONS_00035153-protein

>TCONS_00035153-protein ID=TCONS_00035153-protein|Name=TCONS_00035153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
ERTTLRQNVAAKKNANKKFKPNKSFREVALQRALKTYVISKIVDSYNVLA
IRVLWKEENYSDMFTRRQDLENIFKDIVPVKVLISCVTAMEKGEELDTGL
SFWMAFDWPDITANKFENMLCKKVMESGVKIDSCKGVKPRG
Run BLAST on NCBI

transcript from alignment at sc0001262:35661..36083

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035153 ID=TCONS_00035153|Name=TCONS_00035153|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at sc0001262:35661..36083 (Clytia hemisphaerica)
GAGCGAACCACTCTTCGTCAAAATGTTGCTGCCAAAAAGAAtgcaaataa
aaaattcaaaccgAATAAATCATTTAGAGAAGTTGCTCTACAGAGGGCTT
TGAAAACTTATGtcatttcaaaaattgtggatAGTTATAATGTTCTTGCA
ATAAGAGTGCTGTGGAAGGAGGAGAATTATTCGGATATGTTTACAAGAAG
GCAAGATTTGGAGAATATATTCAAGGATATTGTTCCAGTTAAAGTGTTGA
TAAGCTGTGTTACCGCAATGGAGAAGGGTGAAGAGTTAGATACGGGACTA
AGTTTTTGGATGGCATTTGATTGGCCAGATATCACAGCAAACAAGTTCGA
GAACATGCTATGCAAAAAGGTTATGGAGTCTGGTGTTAAAATCGATTCGT
GCAAGGGAGTCAAACCAAGAGGT

Coding sequence (CDS) from alignment at sc0001262:35661..36083

>TCONS_00035153 ID=TCONS_00035153|Name=TCONS_00035153|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0001262:35661..36083 (Clytia hemisphaerica)
GAGCGAACCACTCTTCGTCAAAATGTTGCTGCCAAAAAGAAtgcaaataa
aaaattcaaaccgAATAAATCATTTAGAGAAGTTGCTCTACAGAGGGCTT
TGAAAACTTATGtcatttcaaaaattgtggatAGTTATAATGTTCTTGCA
ATAAGAGTGCTGTGGAAGGAGGAGAATTATTCGGATATGTTTACAAGAAG
GCAAGATTTGGAGAATATATTCAAGGATATTGTTCCAGTTAAAGTGTTGA
TAAGCTGTGTTACCGCAATGGAGAAGGGTGAAGAGTTAGATACGGGACTA
AGTTTTTGGATGGCATTTGATTGGCCAGATATCACAGCAAACAAGTTCGA
GAACATGCTATGCAAAAAGGTTATGGAGTCTGGTGTTAAAATCGATTCGT
GCAAGGGAGTCAAACCAAGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020497XLOC_020497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035153-exon-sc0001262-1491911889:35661..36083TCONS_00035153-exon-sc0001262-1491911889:35661..36083Clytia hemisphaericaexon
TCONS_00035153-exon-sc0001262-1510915933:35661..36083TCONS_00035153-exon-sc0001262-1510915933:35661..36083Clytia hemisphaericaexon
TCONS_00035153-exon-sc0001262-1575043694:35661..36083TCONS_00035153-exon-sc0001262-1575043694:35661..36083Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035153-proteinTCONS_00035153-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001262supercontigsc0001262:35661..36083 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.81833	1.29332	0	0	0.447138	0.176667	0.639424	2.19494	0.419109	1.03827	1.00777	0.772878	0.220515	0.572518	0.0941375	0.303072	0.248907	0.765364	0.528696	0.184414	0.160289	0.469101	1.14051	0.691258	1.42396	2.70055	0.454645	0.242605	0.368014	0.562422
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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