TCONS_00035147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035147
Unique NameTCONS_00035147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035147 ID=TCONS_00035147|Name=TCONS_00035147|organism=Clytia hemisphaerica|type=transcript|length=599bp
TGATACTAATATTGAATCAGAGTGGGAATCATCAGAGACTGAAGAGGAAA
GTGAAGAGTCACAATCTGAAACTGAAGAACATCCAGAAAATCAGCAGCAA
TCCACGAGAAAGATAAATGGCTACACATTGTTATACAAGCATTACAGTGA
ATCACTTGTTAACCGTTCGGTAGAAGAAAAAACCAAGGCATCTCATTATC
AGATTTCAGTAAACGTGTTGGGACGGCTTGGAGGAAGTAAGAACCCCAGA
TAAAAAAGGAGTGGAACAAGAAAGCCCAGACAGAGAGAGAAGAAACGCCT
GGATACGAATGTGACTTGTGTGGCAAATTCTTTAAGCAAGAAAAAAGAAA
GCGGTTCCATGAAAAACAATGTGGGGACGAATTATTTTGTTACAGCGAAG
GTTGTGggaaaacattcaaaacaaagGATCTTATGAAGAAGCACATGAAA
ACCCATGAGGAGAATTATACTTGTAAAATATGCAACAAAAAATTTGGTAT
AAAGCAAACGTTTTTAACACATGTAAAAAGTCACGAAAAGACTTTCGAAT
GCGATGCTTGTGGAAAAAGGTTTGGTAGCAAGGGCAACATGGTCAGGCA
Run BLAST on NCBI

transcript from alignment at sc0001262:51193..52645+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035147 ID=TCONS_00035147|Name=TCONS_00035147|organism=Clytia hemisphaerica|type=transcript|length=1453bp|location=Sequence derived from alignment at sc0001262:51193..52645+ (Clytia hemisphaerica)
TGATACTAATATTGAATCAGAGTGGGAATCATCAGAGACTGAAGAGGAAA
GTGAAGGTAATTTATTTGCTTCATCAAATTtaatacaattttttgtttaa
tatcTGTTAACAACAACAGTATGAAGTAATAAGACTTTGTCATTCATTTC
ATTCGTTTCATTTACTTtccaattaaaaaataaaaaacgttcGAATTATT
TCTCACCAATCgaacgtttttgtttttttgtgcaTGAAGGGTCTCACTCG
TATGATATTTTGTAtgacataaatttttttttaaattttcaaatcactTA
GAGTCACAATCTGAAACTGAAGAACATCCAGAAAATCAGCAGCAATCCAC
GAGAAAGATAAATGGCTACACATTGTTATACAAGCATTACAGTGTACGTA
CAAATCTTAAGCGTGATAACCTAAATATATACAAAGCTTTCATTACTGCA
AAACGAACTAAAATTATCACTTAATCTTATACTATTGTTTTATCTTTTTC
TGTTTCAGGAATCACTTGTTAACCGTTCGGTAGAAGAAAAAACCAAGGCA
TCTCATTATCAGATTTCAGTAAACGTGTTGGGACGGCTTGGAGGAAGTAA
GAACCCCAGATAAAAAAGGTATTTCTATGAAATTTATTGGTAAACCAAAT
TTAAATTCAACCAATAAAACTAGCGAACGATTAAAAATAAACGTAAGACT
GTAAGATTTAACATAGTAGAAAAGTCAGAGCTAAAGATTTATACTATTTT
GGTGAATTGCACCAAATCTATACCGTCTTCCGTCCGTCACACTTTTTCCT
CTAGGGCTAAGTACAAAAGTGCAACCATCAATTGGTTTGTATTTTCTGAA
AGAATACCATAAAGatacaaaattttaactttatcTCTGATCAAAATATC
TTTGATCTTGAAAAAATCTTGTTGTGACGGACGGGACACGGTACAGATTT
GGTGCAATNAGatacaaaattttaacttttaatcTTTGATCAAAATATCT
TTGATCTTGAAAAAATCTTGTTGTGACGGACGGGACACGGTACAGATTTG
GTGCAATTCACCCATTTTCTccctttgaaattatttttctgaattGTATC
GTTAATTTTCAGGAGTGGAACAAGAAAGCCCAGACAGAGAGAGAAGAAAC
GCCTGGATACGAATGTGACTTGTGTGGCAAATTCTTTAAGCAAGAAAAAA
GAAAGCGGTTCCATGAAAAACAATGTGGGGACGAATTATTTTGTTACAGC
GAAGGTTGTGggaaaacattcaaaacaaagGATCTTATGAAGAAGCACAT
GAAAACCCATGAGGAGAATTATACTTGTAAAATATGCAACAAAAAATTTG
GTATAAAGCAAACGTTTTTAACACATGTAAAAAGTCACGAAAAGACTTTC
GAATGCGATGCTTGTGGAAAAAGGTTTGGTAGCAAGGGCAACATGGTCAG
GCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020491XLOC_020491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035147-exon-sc0001262-1491911889:51193..51248TCONS_00035147-exon-sc0001262-1491911889:51193..51248Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1510915933:51193..51248TCONS_00035147-exon-sc0001262-1510915933:51193..51248Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1575043694:51193..51248TCONS_00035147-exon-sc0001262-1575043694:51193..51248Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1491911889:51494..51585TCONS_00035147-exon-sc0001262-1491911889:51494..51585Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1510915933:51494..51585TCONS_00035147-exon-sc0001262-1510915933:51494..51585Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1575043694:51494..51585TCONS_00035147-exon-sc0001262-1575043694:51494..51585Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1491911889:51701..51810TCONS_00035147-exon-sc0001262-1491911889:51701..51810Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1510915933:51701..51810TCONS_00035147-exon-sc0001262-1510915933:51701..51810Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1575043694:51701..51810TCONS_00035147-exon-sc0001262-1575043694:51701..51810Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1491911889:52305..52645TCONS_00035147-exon-sc0001262-1491911889:52305..52645Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1510915933:52305..52645TCONS_00035147-exon-sc0001262-1510915933:52305..52645Clytia hemisphaericaexon
TCONS_00035147-exon-sc0001262-1575043694:52305..52645TCONS_00035147-exon-sc0001262-1575043694:52305..52645Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001262supercontigsc0001262:51193..52645 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.329985	0.185103	0.313542	1.35784	1.27787	0.189905	0.540187	0.667555	0.436306	0.30027	0.530173	0.359235	0.206851	0.354841	0.996147	1.27197	0.496241	0.179422	0.438503	0.691601	0.448574	1.26884	1.26533	1.14346	1.82759	1.25344
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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