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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035146 ID=TCONS_00035146|Name=TCONS_00035146|organism=Clytia hemisphaerica|type=transcript|length=1312bp
ATTGAAAATCTAGCCGCATCCCAATTGTACATTACCCTGAAGGACCATAA
ATTAGCTGAGCCTCTCAAaaagattgttttgaataaaatgCGCCTAGCAA
GAGCGGAGGCCATCAACCGGGGCGAGGATGAAGACAGCATCGAGATTCCT
GTTGACGAGTCTGTAAAGCCTGTGAAAATATATGTATCGTCAACAATTGC
CAAAAATGTCCACGACAAATTATCGACAGAACTACCACGTCTAAGACAAC
CTGGACTTCGAACTTGACATGAGAAACTCTTCAAACAAGGCTCCGAAAGA
AGTTGCAAAGCCTAGAAGCAGATTGAACCAAGCCATTGATGTAGTTGCTA
GAGTTATGAAAGACGAAAAATGTGAACTGTTCAAAGGATATATCTATCGA
CATGTTCCAGAATCGACCAGAACCTATTACCACTATAAATCTGTCGAGGA
TTATGTCATGAGGATCCTTAAAAATTCATCAGTTACGGATTCCTTATCTG
GTCAAAAATGGGACGTGATACGGCACTTGGAGAAACCTTCTTGTCGAATA
GTGGAACAGATGAAAATGGACTACAACTACATCGAAATTAACGATGGCTT
CTTTTTTAACATAGAAAAGAAGTGTTTCGAGCAGAATCCAGCCCTGACCG
GCTCCCCTAGAGCCTTTGTAATTTATAACCACAAAAAGCGTCCAAATCCA
ACACCATTTATGGAGGGTATTATGAACAGCTTTCCCAATCCCATCATCAG
AAAACAGTTTCTGCAGAAATATTATCAATTGCTGATGCACAAAAAGTTTC
CCAAGAAGGAGAGAAAGCTAATGCTGGTTGGCGACTCGGATTCAGGCAAA
ACTAGCTGGTTTTGTCCATTCGAAGGCATAATTCCATCGACCTTTATCAG
CTATATCGTACCAGATGGACGTTTTTCTGCGTCAACTATCAAAAGCAACA
CCCAAATCGTTTGCATGGACGAGTGGAGTCCCGAATCACTGTCTTGCGAA
GATGCAAAAAGACTTTTGCAAGGTGGTCGCATCACAGTGCAAAAGAAACA
CAAGGGAGTAGAGAGTTTCCACTATAATTCTGGATTCTTTATTACAAcaa
atgaaaatcctgattttggCCCTGGTAGAGACGGTAAAGCAATCAAAAAA
CGTATCTGTGAATTTGACACAATCGAGCTTCCGAAAGTGGATACATCTAT
GAGCAGTAAGTAAATTCATTGTCAACTATCAAACCTGCCTGATAGAATAA
AAAAACTTCATCTTACCCAACAACGAGTCGAGGTGTATTTTATGCCCTGA
GAGATTATCGTT Run BLAST on NCBI protein sequence of TCONS_00035146-protein >TCONS_00035146-protein ID=TCONS_00035146-protein|Name=TCONS_00035146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MRNSSNKAPKEVAKPRSRLNQAIDVVARVMKDEKCELFKGYIYRHVPEST
RTYYHYKSVEDYVMRILKNSSVTDSLSGQKWDVIRHLEKPSCRIVEQMKM
DYNYIEINDGFFFNIEKKCFEQNPALTGSPRAFVIYNHKKRPNPTPFMEG
IMNSFPNPIIRKQFLQKYYQLLMHKKFPKKERKLMLVGDSDSGKTSWFCP
FEGIIPSTFISYIVPDGRFSASTIKSNTQIVCMDEWSPESLSCEDAKRLL
QGGRITVQKKHKGVESFHYNSGFFITTNENPDFGPGRDGKAIKKRICEFD
TIELPKVDTSMSSK Run BLAST on NCBI transcript from alignment at sc0001262:39842..41596+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035146 ID=TCONS_00035146|Name=TCONS_00035146|organism=Clytia hemisphaerica|type=transcript|length=1755bp|location=Sequence derived from alignment at sc0001262:39842..41596+ (Clytia hemisphaerica)
ATTGAAAATCTAGCCGCATCCCAATTGTACATTACCCTGAAGGACCATAA
ATTAGCTGAGCCTCTCAAaaagattgttttgaataaaatgCGCCTAGCAA
GAGCGGAGGCCATCAACCGGGGCGAGGATGAAGACAGCATCGAGATTCCT
GTTGACGAGTCTGTAAAGCCTGTGAAAATATATGTATCGTCAACAATTGC
CAAAAATGTCCACGACAAATTATCGACAGAACTACCACGTCTAAGACAAC
CTGGACTTCGAACTTGACATGAGAAACTCTTCAAGTAAGTAATTTTAAAT
TACATCATTGCAACTATCTCAAGTTGATTATCATAGGAGGAAAGTGAGTT
TTTACATCAAATTTTTGACTTCTATTTTAGACAAGGCTCCGAAAGAAGTT
GCAAAGCCTAGAAGCAGATTGAACCAAGCCATTGATGTAGTTGCTAGAGT
TATGAAAGACGAAAAATGTGAACTGTTCAAAGGATATATCTATCGACATG
TTCCAGAATCGACCAGAACCTATTACCACTATAAATCTGTCGAGGATTAT
GTCATGAGGATCCTTAAAAATTCATCAGTTACGGATTCCTTATCTGGTCA
AAAATGGGACGTGATACGGCACTTGGAGAAACCTTCTTGTCGAATAGTGG
AACAGATGAAAATGGACTACAACTACATCGAAATTAACGATGGCTTCTTT
TTTAACATAGAAAAGAAGTGTTTCGAGCAGAATCCAGCCCTGACCGGCTC
CCCTAGAGCCTTTGTAATTTATAACCACAAAAAGCGTCCAAATCCAACAC
CATTTATGGAGGGtaagcttgttttttttttcagttttgtatCCTATCGA
CAGCTCAATAAAACACTGATTTGAACTCTCCTGTAATGATTTATTGGTTG
TTCGTGTTATATTGCCTCAGCTTCCTATtagaacaaataaaaatatcttg
CTTGATGGACACATTTTCATACTTTATATTACTACTTTATTCCATTCAGG
TATTATGAACAGCTTTCCCAATCCCATCATCAGAAAACAGTTTCTGCAGA
AATATTATCAATTGCTGATGCACAAAAAGTTTCCCAAGAAGGAGAGAAAG
CTAATGCTGGTTGGCGACTCGGATTCAGGCAAAACTAGCTGGTTTTGTCC
ATTCGAAGGCATAATTCCATCGACCTTTATCAGCTATATCGTACCAGATG
GACGTTTTTCTGCGTCAACTATCAAAAGCAACACCCAAATCGTTTGCATG
GACGAGTGGAGTCCCGAATCACTGTCTTGCGAAGATGCAAAAAGACTTTT
GCAAGGTAAAACCAAAATAAGATTCCATACACTAGAATAAATAACCTAGT
CGATCGTATAATCTTGgaaatgcaattttaaaagtaaaagaacaGAAAAC
AACTTGAACTATATTGCAGttattaaaaagataattaaaGTTGATTAATT
TTCTGATCGTTTTAGGTGGTCGCATCACAGTGCAAAAGAAACACAAGGGA
GTAGAGAGTTTCCACTATAATTCTGGATTCTTTATTACAAcaaatgaaaa
tcctgattttggCCCTGGTAGAGACGGTAAAGCAATCAAAAAACGTATCT
GTGAATTTGACACAATCGAGCTTCCGAAAGTGGATACATCTATGAGCAGT
AAGTAAATTCATTGTCAACTATCAAACCTGCCTGATAGAATAAAAAAACT
TCATCTTACCCAACAACGAGTCGAGGTGTATTTTATGCCCTGAGAGATTA
TCGTT Coding sequence (CDS) from alignment at sc0001262:39842..41596+ >TCONS_00035146 ID=TCONS_00035146|Name=TCONS_00035146|organism=Clytia hemisphaerica|type=CDS|length=3780bp|location=Sequence derived from alignment at sc0001262:39842..41596+ (Clytia hemisphaerica)
ATGAGAAACTCTTCAAACAAGGCTCCGAAAGAAGTTGCAAAGCCTAGAAG
CAGATTGAACCAAGCCATTGATGTAGTTGCTAGAGTTATGAAAGACGAAA
AATGTGAACTGTTCAAAGGATATATCTATCGACATGTTCCAGAATCGACC
AGAACCTATTACCACTATAAATCTGTCGAGGATTATGTCATGAGGATCCT
TAAAAATTCATCAGTTACGGATTCCTTATCTGGTCAAAAATGGGACGTGA
TACGGCACTTGGAGAAACCTTCTTGTCGAATAGTGGAACAGATGAAAATG
GACTACAACTACATCGAAATTAACGATGGCTTCTTTTTTAACATAGAAAA
GAAGTGTTTCGAGCAGAATCCAGCCCTGACCGGCTCCCCTAGAGCCTTTG
TAATTTATAACCACAAAAAGCGTCCAAATCCAACACCATTTATGGAGGGT
ATTATGAACAGCTTTCCCAATCCCATCATCAGAAAACAGTTTCTGCAGAA
ATATTATCAATTGCTGATGCACAAAAAGTTTCCCAAGAAGGAGAGAAAGC
TAATGCTGGTTGGCGACTCGGATTCAGGCAAAACTAGCTGGTTTTGTCCA
TTCGAAGGCATAATTCCATCGACCTTTATCAGCTATATCGTACCAGATGG
ACGTTTTTCTGCGTCAACTATCAAAAGCAACACCCAAATCGTTTGCATGG
ACGAGTGGAGTCCCGAATCACTGTCTTGCGAAGATGCAAAAAGACTTTTG
CAAGGTGGTCGCATCACAGTGCAAAAGAAACACAAGGGAGTAGAGAGTTT
CCACTATAATTCTGGATTCTTTATTACAAcaaatgaaaatcctgattttg
gCCCTGGTAGAGACGGTAAAGCAATCAAAAAACGTATCTGTGAATTTGAC
ACAATCGAGCTTCCGAAAGTGGATACATCTATGAGCAGTAAGTAAATGAG
AAACTCTTCAAACAAGGCTCCGAAAGAAGTTGCAAAGCCTAGAAGCAGAT
TGAACCAAGCCATTGATGTAGTTGCTAGAGTTATGAAAGACGAAAAATGT
GAACTGTTCAAAGGATATATCTATCGACATGTTCCAGAATCGACCAGAAC
CTATTACCACTATAAATCTGTCGAGGATTATGTCATGAGGATCCTTAAAA
ATTCATCAGTTACGGATTCCTTATCTGGTCAAAAATGGGACGTGATACGG
CACTTGGAGAAACCTTCTTGTCGAATAGTGGAACAGATGAAAATGGACTA
CAACTACATCGAAATTAACGATGGCTTCTTTTTTAACATAGAAAAGAAGT
GTTTCGAGCAGAATCCAGCCCTGACCGGCTCCCCTAGAGCCTTTGTAATT
TATAACCACAAAAAGCGTCCAAATCCAACACCATTTATGGAGGGTATTAT
GAACAGCTTTCCCAATCCCATCATCAGAAAACAGTTTCTGCAGAAATATT
ATCAATTGCTGATGCACAAAAAGTTTCCCAAGAAGGAGAGAAAGCTAATG
CTGGTTGGCGACTCGGATTCAGGCAAAACTAGCTGGTTTTGTCCATTCGA
AGGCATAATTCCATCGACCTTTATCAGCTATATCGTACCAGATGGACGTT
TTTCTGCGTCAACTATCAAAAGCAACACCCAAATCGTTTGCATGGACGAG
TGGAGTCCCGAATCACTGTCTTGCGAAGATGCAAAAAGACTTTTGCAAGG
TGGTCGCATCACAGTGCAAAAGAAACACAAGGGAGTAGAGAGTTTCCACT
ATAATTCTGGATTCTTTATTACAAcaaatgaaaatcctgattttggCCCT
GGTAGAGACGGTAAAGCAATCAAAAAACGTATCTGTGAATTTGACACAAT
CGAGCTTCCGAAAGTGGATACATCTATGAGCAGTAAGTAAATGAGAAACT
CTTCAAACAAGGCTCCGAAAGAAGTTGCAAAGCCTAGAAGCAGATTGAAC
CAAGCCATTGATGTAGTTGCTAGAGTTATGAAAGACGAAAAATGTGAACT
GTTCAAAGGATATATCTATCGACATGTTCCAGAATCGACCAGAACCTATT
ACCACTATAAATCTGTCGAGGATTATGTCATGAGGATCCTTAAAAATTCA
TCAGTTACGGATTCCTTATCTGGTCAAAAATGGGACGTGATACGGCACTT
GGAGAAACCTTCTTGTCGAATAGTGGAACAGATGAAAATGGACTACAACT
ACATCGAAATTAACGATGGCTTCTTTTTTAACATAGAAAAGAAGTGTTTC
GAGCAGAATCCAGCCCTGACCGGCTCCCCTAGAGCCTTTGTAATTTATAA
CCACAAAAAGCGTCCAAATCCAACACCATTTATGGAGGGTATTATGAACA
GCTTTCCCAATCCCATCATCAGAAAACAGTTTCTGCAGAAATATTATCAA
TTGCTGATGCACAAAAAGTTTCCCAAGAAGGAGAGAAAGCTAATGCTGGT
TGGCGACTCGGATTCAGGCAAAACTAGCTGGTTTTGTCCATTCGAAGGCA
TAATTCCATCGACCTTTATCAGCTATATCGTACCAGATGGACGTTTTTCT
GCGTCAACTATCAAAAGCAACACCCAAATCGTTTGCATGGACGAGTGGAG
TCCCGAATCACTGTCTTGCGAAGATGCAAAAAGACTTTTGCAAGGTGGTC
GCATCACAGTGCAAAAGAAACACAAGGGAGTAGAGAGTTTCCACTATAAT
TCTGGATTCTTTATTACAAcaaatgaaaatcctgattttggCCCTGGTAG
AGACGGTAAAGCAATCAAAAAACGTATCTGTGAATTTGACACAATCGAGC
TTCCGAAAGTGGATACATCTATGAGCAGTAAGTAAATGAGAAACTCTTCA
AACAAGGCTCCGAAAGAAGTTGCAAAGCCTAGAAGCAGATTGAACCAAGC
CATTGATGTAGTTGCTAGAGTTATGAAAGACGAAAAATGTGAACTGTTCA
AAGGATATATCTATCGACATGTTCCAGAATCGACCAGAACCTATTACCAC
TATAAATCTGTCGAGGATTATGTCATGAGGATCCTTAAAAATTCATCAGT
TACGGATTCCTTATCTGGTCAAAAATGGGACGTGATACGGCACTTGGAGA
AACCTTCTTGTCGAATAGTGGAACAGATGAAAATGGACTACAACTACATC
GAAATTAACGATGGCTTCTTTTTTAACATAGAAAAGAAGTGTTTCGAGCA
GAATCCAGCCCTGACCGGCTCCCCTAGAGCCTTTGTAATTTATAACCACA
AAAAGCGTCCAAATCCAACACCATTTATGGAGGGTATTATGAACAGCTTT
CCCAATCCCATCATCAGAAAACAGTTTCTGCAGAAATATTATCAATTGCT
GATGCACAAAAAGTTTCCCAAGAAGGAGAGAAAGCTAATGCTGGTTGGCG
ACTCGGATTCAGGCAAAACTAGCTGGTTTTGTCCATTCGAAGGCATAATT
CCATCGACCTTTATCAGCTATATCGTACCAGATGGACGTTTTTCTGCGTC
AACTATCAAAAGCAACACCCAAATCGTTTGCATGGACGAGTGGAGTCCCG
AATCACTGTCTTGCGAAGATGCAAAAAGACTTTTGCAAGGTGGTCGCATC
ACAGTGCAAAAGAAACACAAGGGAGTAGAGAGTTTCCACTATAATTCTGG
ATTCTTTATTACAAcaaatgaaaatcctgattttggCCCTGGTAGAGACG
GTAAAGCAATCAAAAAACGTATCTGTGAATTTGACACAATCGAGCTTCCG
AAAGTGGATACATCTATGAGCAGTAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035146-exon-sc0001262-1491911889:39842..40125 | TCONS_00035146-exon-sc0001262-1491911889:39842..40125 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1510915933:39842..40125 | TCONS_00035146-exon-sc0001262-1510915933:39842..40125 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1575043694:39842..40125 | TCONS_00035146-exon-sc0001262-1575043694:39842..40125 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1491911889:40222..40653 | TCONS_00035146-exon-sc0001262-1491911889:40222..40653 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1510915933:40222..40653 | TCONS_00035146-exon-sc0001262-1510915933:40222..40653 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1575043694:40222..40653 | TCONS_00035146-exon-sc0001262-1575043694:40222..40653 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1491911889:40841..41146 | TCONS_00035146-exon-sc0001262-1491911889:40841..41146 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1510915933:40841..41146 | TCONS_00035146-exon-sc0001262-1510915933:40841..41146 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1575043694:40841..41146 | TCONS_00035146-exon-sc0001262-1575043694:40841..41146 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1491911889:41307..41596 | TCONS_00035146-exon-sc0001262-1491911889:41307..41596 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1510915933:41307..41596 | TCONS_00035146-exon-sc0001262-1510915933:41307..41596 | Clytia hemisphaerica | exon |
| TCONS_00035146-exon-sc0001262-1575043694:41307..41596 | TCONS_00035146-exon-sc0001262-1575043694:41307..41596 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001262 | supercontig | sc0001262:39842..41596 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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