TCONS_00035144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035144
Unique NameTCONS_00035144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035144 ID=TCONS_00035144|Name=TCONS_00035144|organism=Clytia hemisphaerica|type=transcript|length=522bp
TGGATTGTTAGACTGTGGTGCAAGCAAAACTGTATGTGGAGAAGTATGGC
TAAAACAATATCTATCATCATTacctgaaattgaaaagaacGATGTTAAA
CATTACAGCAGCAAAAGTGTATACCGCTTTGGTGTCGGTGATCAAGTACA
AGCTTCTCAAGGTGTCAGTATTCCTGCGTACATTGGCATCACAAAGGTGC
AAATCAAAACTGATGTAATATCAAAAGATCTACCCCTCCTACTATCACGA
TCCTTCATGAAGCGAGCAAACATGGttcttgattttcaaaaagatgtggT
ATCAACCATGAACCAAAATATCAAACTCAATACCACAAGTAGTGGACATT
ACACCATTCCACTAACTAAACCAAGACAATTGCTTATGAATTTGGAAGAT
CGGAATACAAGAATAACATTCATCTCtacaacaaatcaaacaaacaaGCA
AATAGCTATCAAACTTCATCGCCAGTTTGCCCACCCTTCCTTAAAACAAT
TACTATCCTTAATTAATAAGGC
Run BLAST on NCBI

protein sequence of TCONS_00035144-protein

>TCONS_00035144-protein ID=TCONS_00035144-protein|Name=TCONS_00035144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
GLLDCGASKTVCGEVWLKQYLSSLPEIEKNDVKHYSSKSVYRFGVGDQVQ
ASQGVSIPAYIGITKVQIKTDVISKDLPLLLSRSFMKRANMVLDFQKDVV
STMNQNIKLNTTSSGHYTIPLTKPRQLLMNLEDRNTRITFISTTNQTNKQ
IAIKLHRQFAHPSLKQLLSLINK
Run BLAST on NCBI

transcript from alignment at sc0001261:66890..67411

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035144 ID=TCONS_00035144|Name=TCONS_00035144|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0001261:66890..67411 (Clytia hemisphaerica)
GCCTTATTAATTAAGGATAGTAATTGTTTTAAGGAAGGGTGGGCAAACTG
GCGATGAAGTTTGATAGCTATTTGCttgtttgtttgatttgttgtaGAGA
TGAATGTTATTCTTGTATTCCGATCTTCCAAATTCATAAGCAATTGTCTT
GGTTTAGTTAGTGGAATGGTGTAATGTCCACTACTTGTGGTATTGAGTTT
GATATTTTGGTTCATGGTTGATAccacatctttttgaaaatcaagaaCCA
TGTTTGCTCGCTTCATGAAGGATCGTGATAGTAGGAGGGGTAGATCTTTT
GATATTACATCAGTTTTGATTTGCACCTTTGTGATGCCAATGTACGCAGG
AATACTGACACCTTGAGAAGCTTGTACTTGATCACCGACACCAAAGCGGT
ATACACTTTTGCTGCTGTAATGTTTAACATCgttcttttcaatttcaggt
AATGATGATAGATATTGTTTTAGCCATACTTCTCCACATACAGTTTTGCT
TGCACCACAGTCTAACAATCCA

Coding sequence (CDS) from alignment at sc0001261:66890..67411

>TCONS_00035144 ID=TCONS_00035144|Name=TCONS_00035144|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0001261:66890..67411 (Clytia hemisphaerica)
CTTATTAATTAAGGATAGTAATTGTTTTAAGGAAGGGTGGGCAAACTGGC
GATGAAGTTTGATAGCTATTTGCttgtttgtttgatttgttgtaGAGATG
AATGTTATTCTTGTATTCCGATCTTCCAAATTCATAAGCAATTGTCTTGG
TTTAGTTAGTGGAATGGTGTAATGTCCACTACTTGTGGTATTGAGTTTGA
TATTTTGGTTCATGGTTGATAccacatctttttgaaaatcaagaaCCATG
TTTGCTCGCTTCATGAAGGATCGTGATAGTAGGAGGGGTAGATCTTTTGA
TATTACATCAGTTTTGATTTGCACCTTTGTGATGCCAATGTACGCAGGAA
TACTGACACCTTGAGAAGCTTGTACTTGATCACCGACACCAAAGCGGTAT
ACACTTTTGCTGCTGTAATGTTTAACATCgttcttttcaatttcaggtAA
TGATGATAGATATTGTTTTAGCCATACTTCTCCACATACAGTTTTGCTTG
CACCACAGTCTAACAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020488XLOC_020488Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035144-proteinTCONS_00035144-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035144-exon-sc0001261-1491911889:66890..67411TCONS_00035144-exon-sc0001261-1491911889:66890..67411Clytia hemisphaericaexon
TCONS_00035144-exon-sc0001261-1510915933:66890..67411TCONS_00035144-exon-sc0001261-1510915933:66890..67411Clytia hemisphaericaexon
TCONS_00035144-exon-sc0001261-1575043694:66890..67411TCONS_00035144-exon-sc0001261-1575043694:66890..67411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001261supercontigsc0001261:66890..67411 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566737	0.773721	1.79673	1.00447	1.52855	1.81183	1.45726	5.0478	1.14619	1.65636	0.918689	2.41564	4.44764	4.22749	1.93087	1.45049	0.510537	3.22692	4.33767	3.02604	2.73977	3.36763	0.389886	1.41785	0.608481	0.325833	7.77109	8.29352	1.13226	2.43537
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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