TCONS_00035143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035143
Unique NameTCONS_00035143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035143 ID=TCONS_00035143|Name=TCONS_00035143|organism=Clytia hemisphaerica|type=transcript|length=397bp
AAGTCAACGTTAATGCTTTACTTACAAAGAGACTTTGAGTTTATTTATTC
GTGACGACTCAACAAACAATgacaattattttttaaacgTGAAATTCGTG
CAATACTACGTTACGTTACGATACGACTTTACGATTACGCTACGATAACA
ATGCAACGATGAAGACACATACGATATTCGACCAACGAAAGAAGAAAGAG
GGAGATTGTTAATCATCCATTGTTTCGTTACAGACATAATAATAATTGAT
AACAAATAATAACAGCTGTGGAGGAGCTTTAATTTATGTGAATGAATGAA
CTGTACATTTACCTGTTGTGTTAATTCGTGTTAAGACTTACTGACAATAA
CTGATGATACTGATCGTGATGAGAACTAACAATTGGTGAAGACcacc
Run BLAST on NCBI

transcript from alignment at sc0001261:63819..64215

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035143 ID=TCONS_00035143|Name=TCONS_00035143|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0001261:63819..64215 (Clytia hemisphaerica)
ggtgGTCTTCACCAATTGTTAGTTCTCATCACGATCAGTATCATCAGTTA
TTGTCAGTAAGTCTTAACACGAATTAACACAACAGGTAAATGTACAGTTC
ATTCATTCACATAAATTAAAGCTCCTCCACAGCTGTTATTATTTGTTATC
AATTATTATTATGTCTGTAACGAAACAATGGATGATTAACAATCTCCCTC
TTTCTTCTTTCGTTGGTCGAATATCGTATGTGTCTTCATCGTTGCATTGT
TATCGTAGCGTAATCGTAAAGTCGTATCGTAACGTAACGTAGTATTGCAC
GAATTTCAcgtttaaaaaataattgtcATTGTTTGTTGAGTCGTCACGAA
TAAATAAACTCAAAGTCTCTTTGTAAGTAAAGCATTAACGTTGACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020487XLOC_020487Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035143-exon-sc0001261-1491911889:63819..64215TCONS_00035143-exon-sc0001261-1491911889:63819..64215Clytia hemisphaericaexon
TCONS_00035143-exon-sc0001261-1510915933:63819..64215TCONS_00035143-exon-sc0001261-1510915933:63819..64215Clytia hemisphaericaexon
TCONS_00035143-exon-sc0001261-1575043694:63819..64215TCONS_00035143-exon-sc0001261-1575043694:63819..64215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001261supercontigsc0001261:63819..64215 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.551018	0.51968	0.913955	1.24614	0.300875	1.27152	0	0.947626	0.17882	0	0.241257	0.492323	1.90438	1.27606	0.410792	0.69669	0.141665	0	0.556539	1.75643	1.40756	0.623829	1.07311	0.954144	0.103225	0	2.70211	5.08533	0.733313	0.394041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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