TCONS_00035141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035141
Unique NameTCONS_00035141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035141 ID=TCONS_00035141|Name=TCONS_00035141|organism=Clytia hemisphaerica|type=transcript|length=686bp
CGCCAGACCAGTCAGTCCAACGCCATCAGCGGTACCTTCGACCCACTTGG
CCAGATCTCTTCGATCACCTACGGTCCCTTACCAGCGCCACCCAAGGTTG
CGTCCACCTCCCGTTCGAAGCCATCAATACTACTCGACCATCAAATATTC
ACCAAAGGAGCATGGAGACGAGCTCGTGTAATGTTCCATCCAACGGTCAA
CCTTCGCATTACCTTAGACAACCAGAAAGCTACATGTGTCGATATCGAAG
CTGTAGCCGACTCTGGCGCACAATCCGATATCTGGTCCCTAGAACTCTTC
CTGAAGGCTGGATTCGAGATGTCAGATCTATCACCTGCCGCCCTCTCCCT
GGACGCAGCCAACAAATCACCGATTAGGATCGATGGAGTCTTCCGTGCCA
GAATGACAGGTGCAGTGGAAAGCAGGAACAAAGTATCTTGCCGCTCGATG
GTTTACGTCAGTCGCGATGTTAAGCATTTATACCTTTCATACGACTCCAT
GCTTCAGCTCGGTATAATTAATCGTGACTTTCCAACTGTTGGAGCATTTA
ATAACAATCCAACCAGCAAAGAATCATCTTCTTCCCCTCAGGCAAACGCA
AACATGCCTGTTGGATCAATCTGTGGTGCAACCAAGAGCGATGGGGGCAT
TTGTGACTGCCCCATGCGAACTGCACCACCTTCCCG
Run BLAST on NCBI

protein sequence of TCONS_00035141-protein

>TCONS_00035141-protein ID=TCONS_00035141-protein|Name=TCONS_00035141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
RQTSQSNAISGTFDPLGQISSITYGPLPAPPKVASTSRSKPSILLDHQIF
TKGAWRRARVMFHPTVNLRITLDNQKATCVDIEAVADSGAQSDIWSLELF
LKAGFEMSDLSPAALSLDAANKSPIRIDGVFRARMTGAVESRNKVSCRSM
VYVSRDVKHLYLSYDSMLQLGIINRDFPTVGAFNNNPTSKESSSSPQANA
NMPVGSICGATKSDGGICDCPMRTAPPS
Run BLAST on NCBI

transcript from alignment at sc0001261:47286..47971

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035141 ID=TCONS_00035141|Name=TCONS_00035141|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0001261:47286..47971 (Clytia hemisphaerica)
CGGGAAGGTGGTGCAGTTCGCATGGGGCAGTCACAAATGCCCCCATCGCT
CTTGGTTGCACCACAGATTGATCCAACAGGCATGTTTGCGTTTGCCTGAG
GGGAAGAAGATGATTCTTTGCTGGTTGGATTGTTATTAAATGCTCCAACA
GTTGGAAAGTCACGATTAATTATACCGAGCTGAAGCATGGAGTCGTATGA
AAGGTATAAATGCTTAACATCGCGACTGACGTAAACCATCGAGCGGCAAG
ATACTTTGTTCCTGCTTTCCACTGCACCTGTCATTCTGGCACGGAAGACT
CCATCGATCCTAATCGGTGATTTGTTGGCTGCGTCCAGGGAGAGGGCGGC
AGGTGATAGATCTGACATCTCGAATCCAGCCTTCAGGAAGAGTTCTAGGG
ACCAGATATCGGATTGTGCGCCAGAGTCGGCTACAGCTTCGATATCGACA
CATGTAGCTTTCTGGTTGTCTAAGGTAATGCGAAGGTTGACCGTTGGATG
GAACATTACACGAGCTCGTCTCCATGCTCCTTTGGTGAATATTTGATGGT
CGAGTAGTATTGATGGCTTCGAACGGGAGGTGGACGCAACCTTGGGTGGC
GCTGGTAAGGGACCGTAGGTGATCGAAGAGATCTGGCCAAGTGGGTCGAA
GGTACCGCTGATGGCGTTGGACTGACTGGTCTGGCG

Coding sequence (CDS) from alignment at sc0001261:47286..47971

>TCONS_00035141 ID=TCONS_00035141|Name=TCONS_00035141|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0001261:47286..47971 (Clytia hemisphaerica)
GGAAGGTGGTGCAGTTCGCATGGGGCAGTCACAAATGCCCCCATCGCTCT
TGGTTGCACCACAGATTGATCCAACAGGCATGTTTGCGTTTGCCTGAGGG
GAAGAAGATGATTCTTTGCTGGTTGGATTGTTATTAAATGCTCCAACAGT
TGGAAAGTCACGATTAATTATACCGAGCTGAAGCATGGAGTCGTATGAAA
GGTATAAATGCTTAACATCGCGACTGACGTAAACCATCGAGCGGCAAGAT
ACTTTGTTCCTGCTTTCCACTGCACCTGTCATTCTGGCACGGAAGACTCC
ATCGATCCTAATCGGTGATTTGTTGGCTGCGTCCAGGGAGAGGGCGGCAG
GTGATAGATCTGACATCTCGAATCCAGCCTTCAGGAAGAGTTCTAGGGAC
CAGATATCGGATTGTGCGCCAGAGTCGGCTACAGCTTCGATATCGACACA
TGTAGCTTTCTGGTTGTCTAAGGTAATGCGAAGGTTGACCGTTGGATGGA
ACATTACACGAGCTCGTCTCCATGCTCCTTTGGTGAATATTTGATGGTCG
AGTAGTATTGATGGCTTCGAACGGGAGGTGGACGCAACCTTGGGTGGCGC
TGGTAAGGGACCGTAGGTGATCGAAGAGATCTGGCCAAGTGGGTCGAAGG
TACCGCTGATGGCGTTGGACTGACTGGTCTGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020485XLOC_020485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035141-exon-sc0001261-1491911889:47286..47971TCONS_00035141-exon-sc0001261-1491911889:47286..47971Clytia hemisphaericaexon
TCONS_00035141-exon-sc0001261-1510915933:47286..47971TCONS_00035141-exon-sc0001261-1510915933:47286..47971Clytia hemisphaericaexon
TCONS_00035141-exon-sc0001261-1575043694:47286..47971TCONS_00035141-exon-sc0001261-1575043694:47286..47971Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035141-proteinTCONS_00035141-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001261supercontigsc0001261:47286..47971 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.462289	0.0592093	0	0	0.22644	0.238538	0.401838	0.208777	0.537315	0	0.154527	0.226147	0.152728	0	0.105228	0.085279	0	0	0.285075	0	0	0.0825525	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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