TCONS_00035139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035139
Unique NameTCONS_00035139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035139 ID=TCONS_00035139|Name=TCONS_00035139|organism=Clytia hemisphaerica|type=transcript|length=260bp
CAGAGAGTCAATGTTTAAAATCCTCCTAGCCTACGGCATTCCAGATAAGC
TTGTTAATGCAATCCAGATTATGTATACCAACAACAGAGCCAATGTAATG
ACATCTGAAGGAGAAACCGAATTCTTTGATGTTGTAACTGGTGTGCTTCA
AGGTGATCCATTAGCACCTTACCTCTTTATTATTGTGCTCGATTATGCTC
TGAGGACAGCCATTACTTCTGAAGATGGATTCACTATTGAAAGACGCAGA
AGTAGACGAC
Run BLAST on NCBI

transcript from alignment at sc0001261:12022..12281

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035139 ID=TCONS_00035139|Name=TCONS_00035139|organism=Clytia hemisphaerica|type=transcript|length=260bp|location=Sequence derived from alignment at sc0001261:12022..12281 (Clytia hemisphaerica)
GTCGTCTACTTCTGCGTCTTTCAATAGTGAATCCATCTTCAGAAGTAATG
GCTGTCCTCAGAGCATAATCGAGCACAATAATAAAGAGGTAAGGTGCTAA
TGGATCACCTTGAAGCACACCAGTTACAACATCAAAGAATTCGGTTTCTC
CTTCAGATGTCATTACATTGGCTCTGTTGTTGGTATACATAATCTGGATT
GCATTAACAAGCTTATCTGGAATGCCGTAGGCTAGGAGGATTTTAAACAT
TGACTCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020483XLOC_020483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035139-exon-sc0001261-1491911889:12022..12281TCONS_00035139-exon-sc0001261-1491911889:12022..12281Clytia hemisphaericaexon
TCONS_00035139-exon-sc0001261-1510915933:12022..12281TCONS_00035139-exon-sc0001261-1510915933:12022..12281Clytia hemisphaericaexon
TCONS_00035139-exon-sc0001261-1575043694:12022..12281TCONS_00035139-exon-sc0001261-1575043694:12022..12281Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001261supercontigsc0001261:12022..12281 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.656481	1.28034	3.57252	1.57249	0	1.39915	0.84401	0.790152	2.01031	0.685232	0	1.17286	0.436605	0	0.372772	0	0.927079	0.505122	2.09356	1.46051	1.26945	0	0	0	0	1.88714	0.900166	0.840775	0.599521	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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