TCONS_00035138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035138
Unique NameTCONS_00035138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035138 ID=TCONS_00035138|Name=TCONS_00035138|organism=Clytia hemisphaerica|type=transcript|length=1249bp
CTGCTTACAAATCAGCGGCTAGTGAAAGTATGGAAAAGGCAGGGAAAGAA
GTGTTATCAGATGTAGAGAAAACTGAAGAAGGCAAGGGACTGTCATGTTT
CGCTGGAGGGTTCCTGGCAACGTAGGGGACACGCATCGTTGAATGGCTTG
GTGACAACCATAAGTAAAGGAAAACGCATTGATGTTGAGGTTATGTCTAA
ATTTTGCAGGGGTTGTGCCAtgtggaaaattaaaaaaggaaCAACAGCAG
AATTTGATCAATGGAAAGCTGACCACAGATGCGCTATAAATCATACGAAA
AGCTCAAGCGTGATGGAAGGAGCTGGTGTGGTGATAATGTTCAACGATCC
ATACAAAAGTTTGATTTATAACAAATACCTCAGAGATGGAGATACTTCTT
CTTTTAAAGAGGTAGTAGAAGCCCAGTAGAAGCAGAAccctacaaaaata
aaaaagtcacaCCAAACAAACAAGAATGCGTCGGTCACGTTCGTAAGAGG
CTTGGTACCAGGCTCCGCAAACAAGTAAAAGAATATTGGAAAGgggagaa
aaattaaaaaaaggttaaaTGGTCACCTAAATTGTAAAACTGTCTGATAA
ACCAAAATAACAGACACCATGATCAATTCTATGCACAATTGCTATGGAAT
GGCCATTCGTCGTTTGATTATTTACAAAGTTCGTTTAATTACGTCTGGCT
TAAACCAACTGGAGAGTTTATATTTCAAAGTTAAGGATCGACCCTTGAAA
GGCCGTTATAATCATTTGGAAAAACAGTATAAAGCAAAGAGAAGTAGACA
AGAGAAAGCATCTGGCATCGGTGCTCTTGAAGAAACAGAGGCAATACAAA
GATTGGCTGATATAATTCAACAATTTAAAGACTGTGAAACAAAAGCATCA
GAGGAAAAGGACCAAAAGAAATAAACACAAGATCGAGAGGTGGCACAGAC
AGGAGAGTCTAGCTTTAGGAAGCAAACGTTGGAGACCAAAAACGAAAAAG
CAAACCGGCAGCGAAGATGGAGGAAGCAGTAGAGGAACAGCCAAAAAAAG
ACGATCAAATGGGACCATGGAGTATTtacacaaaaaaactaaaagtgaac
aaaaattaAGAAAGCAAGACTTGGAAATAAAGAAGGCAGAATTAGCGGAT
CGATGGGAGGAAGCAAAGACTTTGAGAGACATGGGATAAATTTGTATCTG
GCTATCTTCTTTTATAGACAGAAATATTATGTTTACTTTTTAAACCTTG
Run BLAST on NCBI

protein sequence of TCONS_00035138-protein

>TCONS_00035138-protein ID=TCONS_00035138-protein|Name=TCONS_00035138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MINSMHNCYGMAIRRLIIYKVRLITSGLNQLESLYFKVKDRPLKGRYNHL
EKQYKAKRSRQEKASGIGALEETEAIQRLADIIQQFKDCETKASEEKDQK
K
Run BLAST on NCBI

transcript from alignment at sc0001260:59689..60937

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035138 ID=TCONS_00035138|Name=TCONS_00035138|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at sc0001260:59689..60937 (Clytia hemisphaerica)
CAAGGTTTAAAAAGTAAACATAATATTTCTGTCTATAAAAGAAGATAGCC
AGATACAAATTTATCCCATGTCTCTCAAAGTCTTTGCTTCCTCCCATCGA
TCCGCTAATTCTGCCTTCTTTATTTCCAAGTCTTGCTTTCTtaatttttg
ttcacttttagtttttttgtgtaAATACTCCATGGTCCCATTTGATCGTC
TTTTTTTGGCTGTTCCTCTACTGCTTCCTCCATCTTCGCTGCCGGTTTGC
TTTTTCGTTTTTGGTCTCCAACGTTTGCTTCCTAAAGCTAGACTCTCCTG
TCTGTGCCACCTCTCGATCTTGTGTTTATTTCTTTTGGTCCTTTTCCTCT
GATGCTTTTGTTTCACAGTCTTTAAATTGTTGAATTATATCAGCCAATCT
TTGTATTGCCTCTGTTTCTTCAAGAGCACCGATGCCAGATGCTTTCTCTT
GTCTACTTCTCTTTGCTTTATACTGTTTTTCCAAATGATTATAACGGCCT
TTCAAGGGTCGATCCTTAACTTTGAAATATAAACTCTCCAGTTGGTTTAA
GCCAGACGTAATTAAACGAACTTTGTAAATAATCAAACGACGAATGGCCA
TTCCATAGCAATTGTGCATAGAATTGATCATGGTGTCTGTTATTTTGGTT
TATCAGACAGTTTTACAATTTAGGTGACCAtttaacctttttttaatttt
tctcccCTTTCCAATATTCTTTTACTTGTTTGCGGAGCCTGGTACCAAGC
CTCTTACGAACGTGACCGACGCATTCTTGTTTGTTTGGtgtgactttttt
atttttgtagggTTCTGCTTCTACTGGGCTTCTACTACCTCTTTAAAAGA
AGAAGTATCTCCATCTCTGAGGTATTTGTTATAAATCAAACTTTTGTATG
GATCGTTGAACATTATCACCACACCAGCTCCTTCCATCACGCTTGAGCTT
TTCGTATGATTTATAGCGCATCTGTGGTCAGCTTTCCATTGATCAAATTC
TGCTGTTGttccttttttaattttccacaTGGCACAACCCCTGCAAAATT
TAGACATAACCTCAACATCAATGCGTTTTCCTTTACTTATGGTTGTCACC
AAGCCATTCAACGATGCGTGTCCCCTACGTTGCCAGGAACCCTCCAGCGA
AACATGACAGTCCCTTGCCTTCTTCAGTTTTCTCTACATCTGATAACACT
TCTTTCCCTGCCTTTTCCATACTTTCACTAGCCGCTGATTTGTAAGCAG

Coding sequence (CDS) from alignment at sc0001260:59689..60937

>TCONS_00035138 ID=TCONS_00035138|Name=TCONS_00035138|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0001260:59689..60937 (Clytia hemisphaerica)
TTATTTCTTTTGGTCCTTTTCCTCTGATGCTTTTGTTTCACAGTCTTTAA
ATTGTTGAATTATATCAGCCAATCTTTGTATTGCCTCTGTTTCTTCAAGA
GCACCGATGCCAGATGCTTTCTCTTGTCTACTTCTCTTTGCTTTATACTG
TTTTTCCAAATGATTATAACGGCCTTTCAAGGGTCGATCCTTAACTTTGA
AATATAAACTCTCCAGTTGGTTTAAGCCAGACGTAATTAAACGAACTTTG
TAAATAATCAAACGACGAATGGCCATTCCATAGCAATTGTGCATAGAATT
GATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020482XLOC_020482Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035138-proteinTCONS_00035138-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035138-exon-sc0001260-1491911889:59689..60937TCONS_00035138-exon-sc0001260-1491911889:59689..60937Clytia hemisphaericaexon
TCONS_00035138-exon-sc0001260-1510915933:59689..60937TCONS_00035138-exon-sc0001260-1510915933:59689..60937Clytia hemisphaericaexon
TCONS_00035138-exon-sc0001260-1575043694:59689..60937TCONS_00035138-exon-sc0001260-1575043694:59689..60937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001260supercontigsc0001260:59689..60937 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0682264	0.0665315	0.231748	0.113365	0.460036	0.363526	0.131574	0.287415	0.229972	0.178036	0.0691225	0.249911	0.113438	0.164929	0.232447	0.291027	0.307304	0.314977	0	0.0379467	0.164913	0.337843	0.0782271	0.284479	0.109878	0.0653754	0.187104	0	0.113589	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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