TCONS_00035137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035137
Unique NameTCONS_00035137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035137 ID=TCONS_00035137|Name=TCONS_00035137|organism=Clytia hemisphaerica|type=transcript|length=283bp
GACGAAACGGTGGGCAAGTAACGCTGGCCATCGACCACTGACTACCCTGG
ACCGTGCAATCAGCAATATACCCTGGACTTGGTTGATGGTTGGCTCTATT
TTGGTgcatttgtttatgtttgtaaATCTGTCCTTATTTTGATCCTCTAG
TCGTCAAGATTTGGGGTACCAACAAAAACAGCCTGGTCGGTATAAACTAT
AAATAACTGGgttatttttaatttgttgttaTATTGTGACGATATGATGA
AATGTGCACCTACAGTAATTCCATCCAGCTCAT
Run BLAST on NCBI

transcript from alignment at sc0001260:5485..5767

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035137 ID=TCONS_00035137|Name=TCONS_00035137|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at sc0001260:5485..5767 (Clytia hemisphaerica)
ATGAGCTGGATGGAATTACTGTAGGTGCACATTTCATCATATCGTCACAA
TAtaacaacaaattaaaaataacCCAGTTATTTATAGTTTATACCGACCA
GGCTGTTTTTGTTGGTACCCCAAATCTTGACGACTAGAGGATCAAAATAA
GGACAGATttacaaacataaacaaatgcACCAAAATAGAGCCAACCATCA
ACCAAGTCCAGGGTATATTGCTGATTGCACGGTCCAGGGTAGTCAGTGGT
CGATGGCCAGCGTTACTTGCCCACCGTTTCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020481XLOC_020481Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035137-exon-sc0001260-1491911889:5485..5767TCONS_00035137-exon-sc0001260-1491911889:5485..5767Clytia hemisphaericaexon
TCONS_00035137-exon-sc0001260-1510915933:5485..5767TCONS_00035137-exon-sc0001260-1510915933:5485..5767Clytia hemisphaericaexon
TCONS_00035137-exon-sc0001260-1575043694:5485..5767TCONS_00035137-exon-sc0001260-1575043694:5485..5767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001260supercontigsc0001260:5485..5767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.463763	0	0	0.641343	0.506798	0.61143	0.572413	0	0.496406	0	0.633464	0	0.656944	0.270049	0.579607	0	0.731856	0.50555	1.05804	0.459815	0	0	0.495746	0	0	0.652111	0	0.527854	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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