TCONS_00035135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035135
Unique NameTCONS_00035135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035135 ID=TCONS_00035135|Name=TCONS_00035135|organism=Clytia hemisphaerica|type=transcript|length=348bp
ACCTTCAAAGTATGCTTCAGGGATAAGCTGATGGAAATTTAACGCCCAAG
CTTCAGAGAATGGATTTGGATGTTCTGGAAAGGAGAAAGATCATGCTACA
AGAAGGGAATTGACTGGCATGGTTTGTCAAGATTTCAAAGCAGACGTTAT
GATTACAGGTTGGGAAATGACATACACAGCAGAATAGAATTCCTGTTCTT
GCCTTTATGACGTGGTAGCTGACTTTCATGAATAGATTTCTTGGCATTTT
AGAACATTAACTTATACACCTGACCTTTGTTATTTACATATGTTGATCAT
GGATGAGAAATGTATTCAATTTACCTTTTCTCACGATTATAATCTGAT
Run BLAST on NCBI

transcript from alignment at sc0001260:18086..19079-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035135 ID=TCONS_00035135|Name=TCONS_00035135|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at sc0001260:18086..19079- (Clytia hemisphaerica)
ACCTTCAAAGTATGCTTCAGGGATAAGCTGATGGAAATTTAACGCCCAAG
CTTCAGAGAATGGATTTGGATGTTCTGGAAAGGAGAAAGATCATGCTACA
AGAAGGTGAAAATTCTACATCATTGTCATTTTTTTCTGTGAAGCTATGTC
TATTCGAAGATGCACTATATTTTGCGCCAGAATTATGTCACTACTGCTGT
TTGTGAGTGGTTATCAAAGGTGATTCTTGAAGTTTAAGACCTAGCTACTG
CCTATCAATTACTTTTATTGTTGTCAAACCCTATTTATTTAAGAACCAAG
CTTCATCATAATATAGAATTTAAAGGCTAATTTAAAGCTTCATTACCAAC
TATTTTTGTATCCCGCGATATATAATAGTGCCATAATAAGAAAGTCTTTC
CTTACAATCTGTAGCATTACTACGTAGAACCAGTCATCCCTATTCTTAAT
AGGTAAAAACTATTCAACCTTCAGCTATTAGTTCGTATGTGTAAAATGCA
AAAGTGACATATACATCGCAGGGAGTAACTGTGGGTGAAAATGACTAGAT
TAGCTACAGAGTACCACAAGCACTCGGCAATTTTCTTGTCTGATTGATGG
ATATTTCAATAACAGACTTAACACGATCATTATTGTATTCCAATTTTAGG
GAATTGACTGGCATGGTTTGTCAAGATTGCTCGGACAAAATCGCGCTGTG
CGTTGAAATCCATTGGCTTGATATTGCATATTNATTGTATTCCAATTTTA
GGGAATTGACTGGCATGGTTTGTCAAGATTTCAAAGCAGACGTTATGATT
ACAGGTTGGGAAATGACATACACAGCAGAATAGAATTCCTGTTCTTGCCT
TTATGACGTGGTAGCTGACTTTCATGAATAGATTTCTTGGCATTTTAGAA
CATTAACTTATACACCTGACCTTTGTTATTTACATATGTTGATCATGGAT
GAGAAATGTATTCAATTTACCTTTTCTCACGATTATAATCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020480XLOC_020480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035135-exon-sc0001260-1575043694:18975..19079TCONS_00035135-exon-sc0001260-1575043694:18975..19079Clytia hemisphaericaexon
TCONS_00035135-exon-sc0001260-1575043694:18086..18328TCONS_00035135-exon-sc0001260-1575043694:18086..18328Clytia hemisphaericaexon
TCONS_00035135-exon-sc0001260-1510915933:18975..19079TCONS_00035135-exon-sc0001260-1510915933:18975..19079Clytia hemisphaericaexon
TCONS_00035135-exon-sc0001260-1510915933:18086..18328TCONS_00035135-exon-sc0001260-1510915933:18086..18328Clytia hemisphaericaexon
TCONS_00035135-exon-sc0001260-1491911889:18975..19079TCONS_00035135-exon-sc0001260-1491911889:18975..19079Clytia hemisphaericaexon
TCONS_00035135-exon-sc0001260-1491911889:18086..18328TCONS_00035135-exon-sc0001260-1491911889:18086..18328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001260supercontigsc0001260:18086..19079 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.489052	0	0	0.00373151	0	1.94136	0.972118	1.29547	0	1.85251	0	0.348078	0	0	0.307909	0.161044	0	3.2536e-07	1.21558	0	0.680713	0.639046	1.76317	0	0.556193	5.04328	3.8438	7.56197e-08	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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