TCONS_00035133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035133
Unique NameTCONS_00035133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035133 ID=TCONS_00035133|Name=TCONS_00035133|organism=Clytia hemisphaerica|type=transcript|length=430bp
TGATTATATTTTTACACCTGCATCGATGAGGGAGTGCCCAAATTGAATTA
GGATCCCAAAACCATTTCACTTCTTTAAACCGTGatccatgccaaatttc
atttgCTGGAAACGAGGTTCCGGTTTCATGTAACCAGtcatctttatttt
ttcaatgatctAGCATCAGTCTACACATATGGGGGCTCGAAAACCGTCTT
TGAAATTTACCCTTCAATGAAAAGTAATATCGACCAATATCAGGAATTTC
CAAACAATCTGGGCATGGTTCTCCAGGTTCAAGTGTATAATATTACAATG
GATGCTCCATGTTAAAACAGATGGCTTTTTCATTCACAGAGGAATACAAA
TTTCCAGCCTTTAATACTGATTCTGCTGATGAGTAGCCTCGAGGCCAGTG
ATCGTAAATGTCTGGATGTGCTAAGTTTAG
Run BLAST on NCBI

transcript from alignment at sc0001258:60976..61405

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035133 ID=TCONS_00035133|Name=TCONS_00035133|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at sc0001258:60976..61405 (Clytia hemisphaerica)
CTAAACTTAGCACATCCAGACATTTACGATCACTGGCCTCGAGGCTACTC
ATCAGCAGAATCAGTATTAAAGGCTGGAAATTTGTATTCCTCTGTGAATG
AAAAAGCCATCTGTTTTAACATGGAGCATCCATTGTAATATTATACACTT
GAACCTGGAGAACCATGCCCAGATTGTTTGGAAATTCCTGATATTGGTCG
ATATTACTTTTCATTGAAGGGTAAATTTCAAAGACGGTTTTCGAGCCCCC
ATATGTGTAGACTGATGCTagatcattgaaaaaataaagatgaCTGGTTA
CATGAAACCGGAACCTCGTTTCCAGcaaatgaaatttggcatggatCACG
GTTTAAAGAAGTGAAATGGTTTTGGGATCCTAATTCAATTTGGGCACTCC
CTCATCGATGCAGGTGTAAAAATATAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020478XLOC_020478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035133-exon-sc0001258-1491911889:60976..61405TCONS_00035133-exon-sc0001258-1491911889:60976..61405Clytia hemisphaericaexon
TCONS_00035133-exon-sc0001258-1510915933:60976..61405TCONS_00035133-exon-sc0001258-1510915933:60976..61405Clytia hemisphaericaexon
TCONS_00035133-exon-sc0001258-1575043694:60976..61405TCONS_00035133-exon-sc0001258-1575043694:60976..61405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001258supercontigsc0001258:60976..61405 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.771566	0.760066	0	0.551643	2.28793	0.741875	0.516228	1.61121	0.295927	0.50269	1.15323	0.965032	0.997535	1.21965	0.792301	0.720195	0.602557	0.532095	1.48076	2.12961	0.690386	0.266959	0.30659	0	0.0449625	0.153824	1.27266	0.263324	2.37736	1.95771
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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