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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035124 ID=TCONS_00035124|Name=TCONS_00035124|organism=Clytia hemisphaerica|type=transcript|length=2015bp
CGGGAAGCCAACATGGCGGTCTTTGGTCAGTggaattttctctttttctg
aCATGATGTGTTTTTAAAAAAGAGAattctttcttattttgaccttCTCG
TGATCTTGGAATTGATTGGTTACTTTCTAAATATGATGATTATACTTTCT
GCTTtcgaaatatttgaaattatgCAAAAATAGGAAAGATTTTGTGTTGC
CAAGTGACCTACAACGAAGTAAATCAAACTTGAAAATGGTGATCCTTCTG
AGCTCAGAATAACAACCTTGGGCAATTTATTGAACAACCAAATCAATTTT
CCTGTAATCTTTTGGGTATCACGAGgcaaagaaagcaaaaattgGCAGTG
GCTTGGCTGTTTCTGGAGTGGCTTGGCTCAATGTATGTGACATGGTAAGT
GTAAACCGAAACActgctttttgttgtttttgtttcaatctgggtaagtt
ttaattaaaaaaacccAAGAAATTATTGAATATTTTATACAATGTTATAG
AGTTCAAGAATTAGGCGCCTAaattttgaagatattcttGTTGTCCTGCT
TATTTTTGCTGTCAGATTTGATGGTGTGTTTGATGTCCAGATATGCCAGT
ATAGTTGGGGCAGTCAGTTTGTTGCATTTGTTAATTTATATAATCTTCAT
ATCATGTTCAatgttttgtgtttttctgctcTACTATTTTTCTACTGTAG
TAGTAACTTCCTTTCGAACTATACAGGGACTAGAAGAcatttagaaagaa
aaaaatacagaaATGTGAAATAGCTACAATTTGCAGTTCACTATGGAATC
CCACAAGATAGAGTTGAAAAATCTATGTAGAGTGTGTGGCTGTACAGTCA
ACAATGGTAAAAAGAGAAAGCCCAAAGCAGCATCAGAGTTTTCACAGCTT
TTAAATTGTCTTGGAATTGACCTTGAAAATGACTCTGATGAGATACATCC
AAAATTGATTTGTGAAAAGTGTAGGAAGATGCTAGCAAATATGAAGAGAG
TTACTGAAAAAGAAAACCGAGTATATAGACCAAATATGATACCCTTTAAC
TTTGAACCTCATTCGAATCAATGTAATATCTGCAATAATGATTTGTCTCA
AAAGAAAGCTGGTCGAAAGCAAGTCTTAAAACAAGTGAACTTTTCTTCTA
TTAAATTGCATGCTGAAGCTTTAGGATTTGCTGTTATTCCAGAAGAGACA
TCAACATCTTACATAATTATGACGAAGCGCACAGAACCAATTTTGCAACT
CAGAAACTTGTTGACTATTTCAGTTTCAAATAGCAAAATTTGGAGTATCT
TCTTAGACAGTTTAGACATTTCTACTAATGAGGTGTTTGCATCAATTCCA
AGCGTTGTTAATGAAGAGCAATGTAAAGGGTTGTTAGAAATATGTTCTCA
GCTGACATTTTGTCGAGGGAATGATGATTTCATTGAACTTTGCAACAGCA
GGCGAGAAGAGGGAAATTATGTCGTGTTCAGGGACAGAGAAAATTCAGTT
ATCGCAAAAGAAGTATATGATGTTATCTGTATGGCGTTAGGTATTGACAG
GACAGTCAGACATAAAAGCTGTACGATGGTTGTTTCAAAAGACTCGTTTC
CTCGTTGTGAAAGCTGTGTGAAATATAGAGCCAATTTGATTGCACTGAAC
TGGAAACTTAAGCAAGGAACCTTTACCTTTAGCTAAACAAGAAATTAAAC
CATCTTCGTCTTCTTCTATACCACATAGACATATGAGCACTGAGCAGCAG
TCTTACAAGCTCAATCAGCAAAAAACTGAGAATCAtgcattgaaaaaaga
aaaccttGACTTGAAAAAAAGGTTGCAGGAGCTTATTGAAGATGTGGGAG
TATCAACTGATGAGAATTTGGGAACAGCCTTCCAAACAACAATAGAAAAT
AAAGATATAATCAACTCTCTTCCTGAAGGATCAGCAATGAGGTTACTTTT
TGAAGAACAAATAAAACAATCAAAGCTTAAGAACTCCAAACAGATGCGAT
GGCACCCAATTATCA Run BLAST on NCBI protein sequence of TCONS_00035124-protein >TCONS_00035124-protein ID=TCONS_00035124-protein|Name=TCONS_00035124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MESHKIELKNLCRVCGCTVNNGKKRKPKAASEFSQLLNCLGIDLENDSDE
IHPKLICEKCRKMLANMKRVTEKENRVYRPNMIPFNFEPHSNQCNICNND
LSQKKAGRKQVLKQVNFSSIKLHAEALGFAVIPEETSTSYIIMTKRTEPI
LQLRNLLTISVSNSKIWSIFLDSLDISTNEVFASIPSVVNEEQCKGLLEI
CSQLTFCRGNDDFIELCNSRREEGNYVVFRDRENSVIAKEVYDVICMALG
IDRTVRHKSCTMVVSKDSFPRCESCVKYRANLIALNWKLKQGTFTFS Run BLAST on NCBI transcript from alignment at sc0001255:48098..50112 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035124 ID=TCONS_00035124|Name=TCONS_00035124|organism=Clytia hemisphaerica|type=transcript|length=2015bp|location=Sequence derived from alignment at sc0001255:48098..50112 (Clytia hemisphaerica)
TGATAATTGGGTGCCATCGCATCTGTTTGGAGTTCTTAAGCTTTGATTGT
TTTATTTGTTCTTCAAAAAGTAACCTCATTGCTGATCCTTCAGGAAGAGA
GTTGATTATATCTTTATTTTCTATTGTTGTTTGGAAGGCTGTTCCCAAAT
TCTCATCAGTTGATACTCCCACATCTTCAATAAGCTCCTGCAACCTTTTT
TTCAAGTCaaggttttcttttttcaatgcaTGATTCTCAGTTTTTTGCTG
ATTGAGCTTGTAAGACTGCTGCTCAGTGCTCATATGTCTATGTGGTATAG
AAGAAGACGAAGATGGTTTAATTTCTTGTTTAGCTAAAGGTAAAGGTTCC
TTGCTTAAGTTTCCAGTTCAGTGCAATCAAATTGGCTCTATATTTCACAC
AGCTTTCACAACGAGGAAACGAGTCTTTTGAAACAACCATCGTACAGCTT
TTATGTCTGACTGTCCTGTCAATACCTAACGCCATACAGATAACATCATA
TACTTCTTTTGCGATAACTGAATTTTCTCTGTCCCTGAACACGACATAAT
TTCCCTCTTCTCGCCTGCTGTTGCAAAGTTCAATGAAATCATCATTCCCT
CGACAAAATGTCAGCTGAGAACATATTTCTAACAACCCTTTACATTGCTC
TTCATTAACAACGCTTGGAATTGATGCAAACACCTCATTAGTAGAAATGT
CTAAACTGTCTAAGAAGATACTCCAAATTTTGCTATTTGAAACTGAAATA
GTCAACAAGTTTCTGAGTTGCAAAATTGGTTCTGTGCGCTTCGTCATAAT
TATGTAAGATGTTGATGTCTCTTCTGGAATAACAGCAAATCCTAAAGCTT
CAGCATGCAATTTAATAGAAGAAAAGTTCACTTGTTTTAAGACTTGCTTT
CGACCAGCTTTCTTTTGAGACAAATCATTATTGCAGATATTACATTGATT
CGAATGAGGTTCAAAGTTAAAGGGTATCATATTTGGTCTATATACTCGGT
TTTCTTTTTCAGTAACTCTCTTCATATTTGCTAGCATCTTCCTACACTTT
TCACAAATCAATTTTGGATGTATCTCATCAGAGTCATTTTCAAGGTCAAT
TCCAAGACAATTTAAAAGCTGTGAAAACTCTGATGCTGCTTTGGGCTTTC
TCTTTTTACCATTGTTGACTGTACAGCCACACACTCTACATAGATTTTTC
AACTCTATCTTGTGGGATTCCATAGTGAACTGCAAATTGTAGCTATTTCA
CATttctgtatttttttctttctaaatgTCTTCTAGTCCCTGTATAGTTC
GAAAGGAAGTTACTACTACAGTAGAAAAATAGTAgagcagaaaaacacaa
aacatTGAACATGATATGAAGATTATATAAATTAACAAATGCAACAAACT
GACTGCCCCAACTATACTGGCATATCTGGACATCAAACACACCATCAAAT
CTGACAGCAAAAATAAGCAGGACAACaagaatatcttcaaaattTAGGCG
CCTAATTCTTGAACTCTATAACATTGTATAAAATATTCAATAATTTCTTg
ggtttttttaattaaaacttacccagattgaaacaaaaacaacaaaaagc
agTGTTTCGGTTTACACTTACCATGTCACATACATTGAGCCAAGCCACTC
CAGAAACAGCCAAGCCACTGCcaatttttgctttctttgcCTCGTGATAC
CCAAAAGATTACAGGAAAATTGATTTGGTTGTTCAATAAATTGCCCAAGG
TTGTTATTCTGAGCTCAGAAGGATCACCATTTTCAAGTTTGATTTACTTC
GTTGTAGGTCACTTGGCAACACAAAATCTTTCCTATTTTTGcataatttc
aaatatttcgaAAGCAGAAAGTATAATCATCATATTTAGAAAGTAACCAA
TCAATTCCAAGATCACGAGaaggtcaaaataagaaagaatTCTCTTTTTT
AAAAACACATCATGtcagaaaaagagaaaattccACTGACCAAAGACCGC
CATGTTGGCTTCCCG Coding sequence (CDS) from alignment at sc0001255:48098..50112 >TCONS_00035124 ID=TCONS_00035124|Name=TCONS_00035124|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0001255:48098..50112 (Clytia hemisphaerica)
TTAGCTAAAGGTAAAGGTTCCTTGCTTAAGTTTCCAGTTCAGTGCAATCA
AATTGGCTCTATATTTCACACAGCTTTCACAACGAGGAAACGAGTCTTTT
GAAACAACCATCGTACAGCTTTTATGTCTGACTGTCCTGTCAATACCTAA
CGCCATACAGATAACATCATATACTTCTTTTGCGATAACTGAATTTTCTC
TGTCCCTGAACACGACATAATTTCCCTCTTCTCGCCTGCTGTTGCAAAGT
TCAATGAAATCATCATTCCCTCGACAAAATGTCAGCTGAGAACATATTTC
TAACAACCCTTTACATTGCTCTTCATTAACAACGCTTGGAATTGATGCAA
ACACCTCATTAGTAGAAATGTCTAAACTGTCTAAGAAGATACTCCAAATT
TTGCTATTTGAAACTGAAATAGTCAACAAGTTTCTGAGTTGCAAAATTGG
TTCTGTGCGCTTCGTCATAATTATGTAAGATGTTGATGTCTCTTCTGGAA
TAACAGCAAATCCTAAAGCTTCAGCATGCAATTTAATAGAAGAAAAGTTC
ACTTGTTTTAAGACTTGCTTTCGACCAGCTTTCTTTTGAGACAAATCATT
ATTGCAGATATTACATTGATTCGAATGAGGTTCAAAGTTAAAGGGTATCA
TATTTGGTCTATATACTCGGTTTTCTTTTTCAGTAACTCTCTTCATATTT
GCTAGCATCTTCCTACACTTTTCACAAATCAATTTTGGATGTATCTCATC
AGAGTCATTTTCAAGGTCAATTCCAAGACAATTTAAAAGCTGTGAAAACT
CTGATGCTGCTTTGGGCTTTCTCTTTTTACCATTGTTGACTGTACAGCCA
CACACTCTACATAGATTTTTCAACTCTATCTTGTGGGATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035124-exon-sc0001255-1491911889:48098..50112 | TCONS_00035124-exon-sc0001255-1491911889:48098..50112 | Clytia hemisphaerica | exon |
| TCONS_00035124-exon-sc0001255-1510915933:48098..50112 | TCONS_00035124-exon-sc0001255-1510915933:48098..50112 | Clytia hemisphaerica | exon |
| TCONS_00035124-exon-sc0001255-1575043694:48098..50112 | TCONS_00035124-exon-sc0001255-1575043694:48098..50112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001255 | supercontig | sc0001255:48098..50112 . |
Blast
The following BLAST results are available for this feature:
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