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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035122 ID=TCONS_00035122|Name=TCONS_00035122|organism=Clytia hemisphaerica|type=transcript|length=741bp
aagtatATGATAAATGTTAAATTGGGTGACATCTCGTCATCCCCCCCGAG
TTCAATATATCTGAACGGTCTTCAACGAGAGACCCATTTACCAGTTTCAG
GTTCGTAAAACTTTTTGGCACGTCTGACTCGAGGTTCACGCGTCTGTGTC
TCGGCAGTAGGGTAGTCAACGGAGTCGAACTCTTGGGGAACGTTGTCATC
AACAAGGGGCTCAGCTTCCACATTACTTCCACTCTCAGGTTCACAGTTCA
ACAGAACATTCGGAGGGGTGGAAGCTGAGTCAGGTGGAGTGGTAGGTAGA
CGATCAGCTGGAGCAGGGACTTCAGGTGTTGAAGTAGGCGGTAAACCGGT
GGATTGCGAACGCTGCGGTGGTGATGGGATACATGGAGACACAGGTTGAA
ACTTACACAGAAATCGTCTATTCCTCCGAGTCAGACGTCCTGATCCATCA
ACTTTGACAACGTAACTATCATGGTCAAGTACTTCAACGACAGTACCTGA
CCGATCCCATCGCTTCGGGTAATTGCCAGCTTGATTTTGGACATAACATC
GGTCCCCAGCTAGAAGTGGTTGGAGTGGTCTGGCGTGAGATGCTAAGGAT
TCGGCAGTACGATGGTAGCGAGTTCGAAGTGCAGCTTCCTTCTCCTCCCA
AGCATCTCTCCAAATTTGTCGGACGTTGGGGTTTGAATACTTCTCCAAAC
GGTTGACGAATGACATCGAATCACGAAGGGGTCTTCCAAAT Run BLAST on NCBI protein sequence of TCONS_00035122-protein >TCONS_00035122-protein ID=TCONS_00035122-protein|Name=TCONS_00035122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
FGRPLRDSMSFVNRLEKYSNPNVRQIWRDAWEEKEAALRTRYHRTAESLA
SHARPLQPLLAGDRCYVQNQAGNYPKRWDRSGTVVEVLDHDSYVVKVDGS
GRLTRRNRRFLCKFQPVSPCIPSPPQRSQSTGLPPTSTPEVPAPADRLPT
TPPDSASTPPNVLLNCEPESGSNVEAEPLVDDNVPQEFDSVDYPTAETQT
REPRVRRAKKFYEPETGKWVSR Run BLAST on NCBI transcript from alignment at sc0001255:24172..24912 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035122 ID=TCONS_00035122|Name=TCONS_00035122|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at sc0001255:24172..24912 (Clytia hemisphaerica)
ATTTGGAAGACCCCTTCGTGATTCGATGTCATTCGTCAACCGTTTGGAGA
AGTATTCAAACCCCAACGTCCGACAAATTTGGAGAGATGCTTGGGAGGAG
AAGGAAGCTGCACTTCGAACTCGCTACCATCGTACTGCCGAATCCTTAGC
ATCTCACGCCAGACCACTCCAACCACTTCTAGCTGGGGACCGATGTTATG
TCCAAAATCAAGCTGGCAATTACCCGAAGCGATGGGATCGGTCAGGTACT
GTCGTTGAAGTACTTGACCATGATAGTTACGTTGTCAAAGTTGATGGATC
AGGACGTCTGACTCGGAGGAATAGACGATTTCTGTGTAAGTTTCAACCTG
TGTCTCCATGTATCCCATCACCACCGCAGCGTTCGCAATCCACCGGTTTA
CCGCCTACTTCAACACCTGAAGTCCCTGCTCCAGCTGATCGTCTACCTAC
CACTCCACCTGACTCAGCTTCCACCCCTCCGAATGTTCTGTTGAACTGTG
AACCTGAGAGTGGAAGTAATGTGGAAGCTGAGCCCCTTGTTGATGACAAC
GTTCCCCAAGAGTTCGACTCCGTTGACTACCCTACTGCCGAGACACAGAC
GCGTGAACCTCGAGTCAGACGTGCCAAAAAGTTTTACGAACCTGAAACTG
GTAAATGGGTCTCTCGTTGAAGACCGTTCAGATATATTGAACTCGGGGGG
GATGACGAGATGTCACCCAATTTAACATTTATCATatactt Coding sequence (CDS) from alignment at sc0001255:24172..24912 >TCONS_00035122 ID=TCONS_00035122|Name=TCONS_00035122|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0001255:24172..24912 (Clytia hemisphaerica)
TTTGGAAGACCCCTTCGTGATTCGATGTCATTCGTCAACCGTTTGGAGAA
GTATTCAAACCCCAACGTCCGACAAATTTGGAGAGATGCTTGGGAGGAGA
AGGAAGCTGCACTTCGAACTCGCTACCATCGTACTGCCGAATCCTTAGCA
TCTCACGCCAGACCACTCCAACCACTTCTAGCTGGGGACCGATGTTATGT
CCAAAATCAAGCTGGCAATTACCCGAAGCGATGGGATCGGTCAGGTACTG
TCGTTGAAGTACTTGACCATGATAGTTACGTTGTCAAAGTTGATGGATCA
GGACGTCTGACTCGGAGGAATAGACGATTTCTGTGTAAGTTTCAACCTGT
GTCTCCATGTATCCCATCACCACCGCAGCGTTCGCAATCCACCGGTTTAC
CGCCTACTTCAACACCTGAAGTCCCTGCTCCAGCTGATCGTCTACCTACC
ACTCCACCTGACTCAGCTTCCACCCCTCCGAATGTTCTGTTGAACTGTGA
ACCTGAGAGTGGAAGTAATGTGGAAGCTGAGCCCCTTGTTGATGACAACG
TTCCCCAAGAGTTCGACTCCGTTGACTACCCTACTGCCGAGACACAGACG
CGTGAACCTCGAGTCAGACGTGCCAAAAAGTTTTACGAACCTGAAACTGG
TAAATGGGTCTCTCGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035122-exon-sc0001255-1491911889:24172..24912 | TCONS_00035122-exon-sc0001255-1491911889:24172..24912 | Clytia hemisphaerica | exon |
| TCONS_00035122-exon-sc0001255-1510915933:24172..24912 | TCONS_00035122-exon-sc0001255-1510915933:24172..24912 | Clytia hemisphaerica | exon |
| TCONS_00035122-exon-sc0001255-1575043694:24172..24912 | TCONS_00035122-exon-sc0001255-1575043694:24172..24912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001255 | supercontig | sc0001255:24172..24912 . |
Blast
The following BLAST results are available for this feature:
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