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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035117 ID=TCONS_00035117|Name=TCONS_00035117|organism=Clytia hemisphaerica|type=transcript|length=792bp
NNTATGTCAATCTTTCCCATGAAGCAACCTCTACCCAAGAGATGAACTAA
ATCTACAGcatcatcaaaagaagaatatttCACGTGGCACGATTCTATAG
GGATACCATCATTCACTGAACAGCCGTTAGGTTGAGACAAATCAAGGATA
ATACGAGAAGAACCATCATTCTTAGGTGTAGATCCAAGAGGAGAACAGTG
AAGATTAGGAAGGGGAGAAGTAGCAAAGGGGCCAGCGGTGTGACCTCGCT
CTAGTTCTTTCATGATGGACGCTGAAACTTTGTCACTTACGATCATGGCA
GAAGAATTGTTCCTCCCAGTGTGAGAAAGGGGACTATCTCCAAAGCCCAA
ACGAAACCCATGGGAAAAACCATgaattaaaaaatcaacaatATCAGGGG
AGTACCCTGACAAAAGATACTCAAGATTTGATATATTTACAGGCGAGGAA
ACAGAAGTGGGTAGAGAAGACTGTGAAGGAAAGGAATCTAGTAAAAGAGA
ATCACTGGCACTGGAATCCTGGGTGGTCACTGGCCCCACAGAAGATGCAG
ACATGGAGAAATCTGCAGTTATTGGAAGGTCGAGTACACAACCCTTGGTT
CGATTCCCGGCACACTTGGCCACTATAGCCGGCAGTCTGGGATCGCTGGG
GGGCAGGAAAGGGCGGTGGCCTGGAACCATGTTGGGAAGGCACAGAGAAA
CGAGAGGGGGCCTGAAAATTGGATGAGACACTGTGGGAATTTGATCCGAA
AGAGCCTGGTTGGGTGGGTGGGAACCCAGGGGCCCGGGGCTT Run BLAST on NCBI protein sequence of TCONS_00035117-protein >TCONS_00035117-protein ID=TCONS_00035117-protein|Name=TCONS_00035117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
SPGPLGSHPPNQALSDQIPTVSHPIFRPPLVSLCLPNMVPGHRPFLPPSD
PRLPAIVAKCAGNRTKGCVLDLPITADFSMSASSVGPVTTQDSSASDSLL
LDSFPSQSSLPTSVSSPVNISNLEYLLSGYSPDIVDFLIHGFSHGFRLGF
GDSPLSHTGRNNSSAMIVSDKVSASIMKELERGHTAGPFATSPLPNLHCS
PLGSTPKNDGSSRIILDLSQPNGCSVNDGIPIESCHVKYSSFDDAVDLVH
LLGRGCFMGKIDI Run BLAST on NCBI transcript from alignment at sc0001253:52182..52973 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035117 ID=TCONS_00035117|Name=TCONS_00035117|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0001253:52182..52973 (Clytia hemisphaerica)
AAGCCCCGGGCCCCTGGGTTCCCACCCACCCAACCAGGCTCTTTCGGATC
AAATTCCCACAGTGTCTCATCCAATTTTCAGGCCCCCTCTCGTTTCTCTG
TGCCTTCCCAACATGGTTCCAGGCCACCGCCCTTTCCTGCCCCCCAGCGA
TCCCAGACTGCCGGCTATAGTGGCCAAGTGTGCCGGGAATCGAACCAAGG
GTTGTGTACTCGACCTTCCAATAACTGCAGATTTCTCCATGTCTGCATCT
TCTGTGGGGCCAGTGACCACCCAGGATTCCAGTGCCAGTGATTCTCTTTT
ACTAGATTCCTTTCCTTCACAGTCTTCTCTACCCACTTCTGTTTCCTCGC
CTGTAAATATATCAAATCTTGAGTATCTTTTGTCAGGGTACTCCCCTGAT
attgttgattttttaattcATGGTTTTTCCCATGGGTTTCGTTTGGGCTT
TGGAGATAGTCCCCTTTCTCACACTGGGAGGAACAATTCTTCTGCCATGA
TCGTAAGTGACAAAGTTTCAGCGTCCATCATGAAAGAACTAGAGCGAGGT
CACACCGCTGGCCCCTTTGCTACTTCTCCCCTTCCTAATCTTCACTGTTC
TCCTCTTGGATCTACACCTAAGAATGATGGTTCTTCTCGTATTATCCTTG
ATTTGTCTCAACCTAACGGCTGTTCAGTGAATGATGGTATCCCTATAGAA
TCGTGCCACGTGaaatattcttcttttgatgatgCTGTAGATTTAGTTCA
TCTCTTGGGTAGAGGTTGCTTCATGGGAAAGATTGACATANN Coding sequence (CDS) from alignment at sc0001253:52182..52973 >TCONS_00035117 ID=TCONS_00035117|Name=TCONS_00035117|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at sc0001253:52182..52973 (Clytia hemisphaerica)
AGCCCCGGGCCCCTGGGTTCCCACCCACCCAACCAGGCTCTTTCGGATCA
AATTCCCACAGTGTCTCATCCAATTTTCAGGCCCCCTCTCGTTTCTCTGT
GCCTTCCCAACATGGTTCCAGGCCACCGCCCTTTCCTGCCCCCCAGCGAT
CCCAGACTGCCGGCTATAGTGGCCAAGTGTGCCGGGAATCGAACCAAGGG
TTGTGTACTCGACCTTCCAATAACTGCAGATTTCTCCATGTCTGCATCTT
CTGTGGGGCCAGTGACCACCCAGGATTCCAGTGCCAGTGATTCTCTTTTA
CTAGATTCCTTTCCTTCACAGTCTTCTCTACCCACTTCTGTTTCCTCGCC
TGTAAATATATCAAATCTTGAGTATCTTTTGTCAGGGTACTCCCCTGATa
ttgttgattttttaattcATGGTTTTTCCCATGGGTTTCGTTTGGGCTTT
GGAGATAGTCCCCTTTCTCACACTGGGAGGAACAATTCTTCTGCCATGAT
CGTAAGTGACAAAGTTTCAGCGTCCATCATGAAAGAACTAGAGCGAGGTC
ACACCGCTGGCCCCTTTGCTACTTCTCCCCTTCCTAATCTTCACTGTTCT
CCTCTTGGATCTACACCTAAGAATGATGGTTCTTCTCGTATTATCCTTGA
TTTGTCTCAACCTAACGGCTGTTCAGTGAATGATGGTATCCCTATAGAAT
CGTGCCACGTGaaatattcttcttttgatgatgCTGTAGATTTAGTTCAT
CTCTTGGGTAGAGGTTGCTTCATGGGAAAGATTGACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035117-exon-sc0001253-1491911889:52182..52973 | TCONS_00035117-exon-sc0001253-1491911889:52182..52973 | Clytia hemisphaerica | exon |
| TCONS_00035117-exon-sc0001253-1510915933:52182..52973 | TCONS_00035117-exon-sc0001253-1510915933:52182..52973 | Clytia hemisphaerica | exon |
| TCONS_00035117-exon-sc0001253-1575043694:52182..52973 | TCONS_00035117-exon-sc0001253-1575043694:52182..52973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001253 | supercontig | sc0001253:52182..52973 . |
Blast
The following BLAST results are available for this feature:
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