TCONS_00035116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035116
Unique NameTCONS_00035116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035116 ID=TCONS_00035116|Name=TCONS_00035116|organism=Clytia hemisphaerica|type=transcript|length=463bp
ATGTCGAACAGGACTGATCTAAGGGTAGCATCAGTAAGGGTGTTTGGGTT
GAGGTTCTGGCTCTCAGCGATTAGTACAACTTCCTCTCTCAATAAGTTGC
TCCAATCGTCGCGTGTCAACGTGTGAAGGTTGATAGCTCCCTTTGCTGAA
TTAGATGACAGTTGATCATCATTTGGTGGTGTTAATGATTTTTCATCTGT
TTTTGGTTTCTTCGTTTTTGGACCACAATCAACATGGGTGATCAAAAACA
GGAACAAACTGAATTTTAGACTTTTGGTATggtataaaattattttcaag
ttaTCTGGCAGAGATGGGGTATGCAAATGGAGTCTGATTTATAGGATCTG
TGTTGGCCGTACTAGTTTAGAGAAAATTGCCGTCAGCCGATGATTGAAAA
gaaagatggcggagaagtaaCGACGGGAATTAATTACCCGCAAAAGCGGG
ATGCTATTCTGTG
Run BLAST on NCBI

transcript from alignment at sc0001253:50657..51119

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035116 ID=TCONS_00035116|Name=TCONS_00035116|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at sc0001253:50657..51119 (Clytia hemisphaerica)
CACAGAATAGCATCCCGCTTTTGCGGGTAATTAATTCCCGTCGttacttc
tccgccatctttcTTTTCAATCATCGGCTGACGGCAATTTTCTCTAAACT
AGTACGGCCAACACAGATCCTATAAATCAGACTCCATTTGCATACCCCAT
CTCTGCCAGAtaacttgaaaataattttataccATACCAAAAGTCTAAAA
TTCAGTTTGTTCCTGTTTTTGATCACCCATGTTGATTGTGGTCCAAAAAC
GAAGAAACCAAAAACAGATGAAAAATCATTAACACCACCAAATGATGATC
AACTGTCATCTAATTCAGCAAAGGGAGCTATCAACCTTCACACGTTGACA
CGCGACGATTGGAGCAACTTATTGAGAGAGGAAGTTGTACTAATCGCTGA
GAGCCAGAACCTCAACCCAAACACCCTTACTGATGCTACCCTTAGATCAG
TCCTGTTCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020461XLOC_020461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035116-exon-sc0001253-1491911889:50657..51119TCONS_00035116-exon-sc0001253-1491911889:50657..51119Clytia hemisphaericaexon
TCONS_00035116-exon-sc0001253-1510915933:50657..51119TCONS_00035116-exon-sc0001253-1510915933:50657..51119Clytia hemisphaericaexon
TCONS_00035116-exon-sc0001253-1575043694:50657..51119TCONS_00035116-exon-sc0001253-1575043694:50657..51119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001253supercontigsc0001253:50657..51119 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18971	0.160104	0	0	4.65937	2.76139	1.8685	4.39549	0.493581	1.04	0.470645	0.317044	0.358758	0.392785	0.9925	2.41361	3.53141	2.09438	0.234116	0.892748	1.52812	0.28151	0.563769	0.920871	0	0	4.47095	3.17279	3.48928	1.82639
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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