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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035113 ID=TCONS_00035113|Name=TCONS_00035113|organism=Clytia hemisphaerica|type=transcript|length=1153bp
AAGTTATTGGTGGAAAAAAGTCTCGTATAGCGCAGAATATTGCGACAAAT
AGAGTATCAAATAGAATCGGTTCAATGCAACGCATTGTGGAAGATGTTGC
TAATAGTGAAGTCGTTGAATTAGCGTTGTCAAAGCGATTTAGACCTGAAG
AAATAGAAGGCGCATTTGATGGTGGATATGTTAGATTTAGAAGTAAAGGT
GTTGAAGAACATCAAGGTGTTGTTAGTGTTGAAGAATATATACAACGTAC
AAGACATCATGTATTAAAAGTGTTAGAGGAAATGGTCAGACGAGGGGAAA
GTTATAAAGTTCATTTGGAAATAGCAGTTTTGTTTAGAAGACGAGATGGA
AACGAAGAGACAACGAAAATGATATGGTCAAATCCACCAAATGTTATTAT
GGAAGGTTCTGATTTAGAAGAAGTCTTAGATGAAATGCGAACGTCTTTGA
TGCAACAATATGAAAGGATAATTAACACAATGGAGGCGAGCGACTTTGTG
TTTGTGCATGTAGTCGAGATGACGTACCATTGTCACAGGGTGGATTTGAA
TCGGGGAGGCTCATATATTGAGCTGCCTGATTGGGTAAAAAATAAGAAGT
GTTGTATCAATCCAAAAAATGAAGGTGATGATGAGTGTTTCAAGTGGGCT
GTGACTGTTGCTTTACATCATGAGGAAATCAGAGTTCATCCTGAAAGAGT
TTCAAAGATAAAGCCATATACTGATCGATATGCTTGGAATGGTATCGATT
TTCCAATACCAAATAATCAAtggaagaaatttgaaaatcagaatTCTAAC
ATTGCTTTAAATGTACTTGTCATCGAAGGTGAGCTGAAAATAAGACAGgc
atatatttcaaaatataatacTGAAAGATCTAAGTGTGTAGATTTGTTAC
TTATTCAGCAAGGTAACAAGAAGCATTATGTAGCGATTAAATCATTATCA
GCTCTTTTTAGAAGTGTAACTTCAGATCACAATGGAGACTTTTACTGTCG
CAATTGTTTAGGTAGTTTTCGAAGTAAAGATACTTTGGAAATACATATTC
AAGCATGTaaggatcatgatttttgttatGTAAAGATGCCTGAGGAaggt
aaaaacattttaagatatCAAGAAGGTTCTAAATCGATTAGAGTACCATT
TGT Run BLAST on NCBI protein sequence of TCONS_00035113-protein >TCONS_00035113-protein ID=TCONS_00035113-protein|Name=TCONS_00035113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
VIGGKKSRIAQNIATNRVSNRIGSMQRIVEDVANSEVVELALSKRFRPEE
IEGAFDGGYVRFRSKGVEEHQGVVSVEEYIQRTRHHVLKVLEEMVRRGES
YKVHLEIAVLFRRRDGNEETTKMIWSNPPNVIMEGSDLEEVLDEMRTSLM
QQYERIINTMEASDFVFVHVVEMTYHCHRVDLNRGGSYIELPDWVKNKKC
CINPKNEGDDECFKWAVTVALHHEEIRVHPERVSKIKPYTDRYAWNGIDF
PIPNNQWKKFENQNSNIALNVLVIEGELKIRQAYISKYNTERSKCVDLLL
IQQGNKKHYVAIKSLSALFRSVTSDHNGDFYCRNCLGSFRSKDTLEIHIQ
ACKDHDFCYVKMPEEGKNILRYQEGSKSIRVPF Run BLAST on NCBI transcript from alignment at sc0001253:17669..18821 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035113 ID=TCONS_00035113|Name=TCONS_00035113|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at sc0001253:17669..18821 (Clytia hemisphaerica)
ACAAATGGTACTCTAATCGATTTAGAACCTTCTTGatatcttaaaatgtt
tttacctTCCTCAGGCATCTTTACataacaaaaatcatgatccttACATG
CTTGAATATGTATTTCCAAAGTATCTTTACTTCGAAAACTACCTAAACAA
TTGCGACAGTAAAAGTCTCCATTGTGATCTGAAGTTACACTTCTAAAAAG
AGCTGATAATGATTTAATCGCTACATAATGCTTCTTGTTACCTTGCTGAA
TAAGTAACAAATCTACACACTTAGATCTTTCAgtattatattttgaaata
tatgcCTGTCTTATTTTCAGCTCACCTTCGATGACAAGTACATTTAAAGC
AATGTTAGAattctgattttcaaatttcttccaTTGATTATTTGGTATTG
GAAAATCGATACCATTCCAAGCATATCGATCAGTATATGGCTTTATCTTT
GAAACTCTTTCAGGATGAACTCTGATTTCCTCATGATGTAAAGCAACAGT
CACAGCCCACTTGAAACACTCATCATCACCTTCATTTTTTGGATTGATAC
AACACTTCTTATTTTTTACCCAATCAGGCAGCTCAATATATGAGCCTCCC
CGATTCAAATCCACCCTGTGACAATGGTACGTCATCTCGACTACATGCAC
AAACACAAAGTCGCTCGCCTCCATTGTGTTAATTATCCTTTCATATTGTT
GCATCAAAGACGTTCGCATTTCATCTAAGACTTCTTCTAAATCAGAACCT
TCCATAATAACATTTGGTGGATTTGACCATATCATTTTCGTTGTCTCTTC
GTTTCCATCTCGTCTTCTAAACAAAACTGCTATTTCCAAATGAACTTTAT
AACTTTCCCCTCGTCTGACCATTTCCTCTAACACTTTTAATACATGATGT
CTTGTACGTTGTATATATTCTTCAACACTAACAACACCTTGATGTTCTTC
AACACCTTTACTTCTAAATCTAACATATCCACCATCAAATGCGCCTTCTA
TTTCTTCAGGTCTAAATCGCTTTGACAACGCTAATTCAACGACTTCACTA
TTAGCAACATCTTCCACAATGCGTTGCATTGAACCGATTCTATTTGATAC
TCTATTTGTCGCAATATTCTGCGCTATACGAGACTTTTTTCCACCAATAA
CTT Coding sequence (CDS) from alignment at sc0001253:17669..18821 >TCONS_00035113 ID=TCONS_00035113|Name=TCONS_00035113|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at sc0001253:17669..18821 (Clytia hemisphaerica)
AAATGGTACTCTAATCGATTTAGAACCTTCTTGatatcttaaaatgtttt
tacctTCCTCAGGCATCTTTACataacaaaaatcatgatccttACATGCT
TGAATATGTATTTCCAAAGTATCTTTACTTCGAAAACTACCTAAACAATT
GCGACAGTAAAAGTCTCCATTGTGATCTGAAGTTACACTTCTAAAAAGAG
CTGATAATGATTTAATCGCTACATAATGCTTCTTGTTACCTTGCTGAATA
AGTAACAAATCTACACACTTAGATCTTTCAgtattatattttgaaatata
tgcCTGTCTTATTTTCAGCTCACCTTCGATGACAAGTACATTTAAAGCAA
TGTTAGAattctgattttcaaatttcttccaTTGATTATTTGGTATTGGA
AAATCGATACCATTCCAAGCATATCGATCAGTATATGGCTTTATCTTTGA
AACTCTTTCAGGATGAACTCTGATTTCCTCATGATGTAAAGCAACAGTCA
CAGCCCACTTGAAACACTCATCATCACCTTCATTTTTTGGATTGATACAA
CACTTCTTATTTTTTACCCAATCAGGCAGCTCAATATATGAGCCTCCCCG
ATTCAAATCCACCCTGTGACAATGGTACGTCATCTCGACTACATGCACAA
ACACAAAGTCGCTCGCCTCCATTGTGTTAATTATCCTTTCATATTGTTGC
ATCAAAGACGTTCGCATTTCATCTAAGACTTCTTCTAAATCAGAACCTTC
CATAATAACATTTGGTGGATTTGACCATATCATTTTCGTTGTCTCTTCGT
TTCCATCTCGTCTTCTAAACAAAACTGCTATTTCCAAATGAACTTTATAA
CTTTCCCCTCGTCTGACCATTTCCTCTAACACTTTTAATACATGATGTCT
TGTACGTTGTATATATTCTTCAACACTAACAACACCTTGATGTTCTTCAA
CACCTTTACTTCTAAATCTAACATATCCACCATCAAATGCGCCTTCTATT
TCTTCAGGTCTAAATCGCTTTGACAACGCTAATTCAACGACTTCACTATT
AGCAACATCTTCCACAATGCGTTGCATTGAACCGATTCTATTTGATACTC
TATTTGTCGCAATATTCTGCGCTATACGAGACTTTTTTCCACCAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035113-exon-sc0001253-1491911889:17669..18821 | TCONS_00035113-exon-sc0001253-1491911889:17669..18821 | Clytia hemisphaerica | exon |
| TCONS_00035113-exon-sc0001253-1510915933:17669..18821 | TCONS_00035113-exon-sc0001253-1510915933:17669..18821 | Clytia hemisphaerica | exon |
| TCONS_00035113-exon-sc0001253-1575043694:17669..18821 | TCONS_00035113-exon-sc0001253-1575043694:17669..18821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001253 | supercontig | sc0001253:17669..18821 . |
Blast
The following BLAST results are available for this feature:
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