TCONS_00035112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035112
Unique NameTCONS_00035112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035112 ID=TCONS_00035112|Name=TCONS_00035112|organism=Clytia hemisphaerica|type=transcript|length=623bp
ATTTTTACAAACCACAAGcgaaaaacaaagcaaaactgttttgatgtcaT
ATCTGAGCGAATATAGAGTAATTTGGTGGTAAAAATCAGATTCTAGAGTG
GTGTATGGCTCTCTTCATCTCGATAAAAATCCACCCCTGGGACGCTGAGT
AGACTGACCTACACTCACGAAATGACTGCGCCCCAGGTAGTAATCAGCGA
ACCAAACGGCCTCTGAAAGTTGTCACAAAAAGTGGCTTCGTTAATGCGTA
GTAAGTTCAAGATTACAAAAAGCTGTCGAGTCagttcaaaactcaaaaaa
tgagtGGAAAAAGTGTCGGAAAGTTGAATATGGTACTATCGACAACGCTT
GGGTAATTGTGTAAGAGTTCacatcaaaaactcaaaaacagaCGGAGATT
GTGTAAGAgttcacatcaaaactcaactGTCGGAGATTGTGTAGAgttca
catcaaaactcaacaAAAAAGACTGGGCCCGGTCGAAAAAAAAGATAGAA
ATGACAAAGAAAGTCTGAGGTTCAGGGGTAGAGCTCAGAGCCAGTGGAGA
CGCGAGTCTGAGAAGCCGGGGTGGAGTGCCGGTTGAACCGAGGAAACATG
AAAAGTTGCACGTAAAAACCTAC
Run BLAST on NCBI

transcript from alignment at sc0001253:12960..13582

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035112 ID=TCONS_00035112|Name=TCONS_00035112|organism=Clytia hemisphaerica|type=transcript|length=623bp|location=Sequence derived from alignment at sc0001253:12960..13582 (Clytia hemisphaerica)
GTAGGTTTTTACGTGCAACTTTTCATGTTTCCTCGGTTCAACCGGCACTC
CACCCCGGCTTCTCAGACTCGCGTCTCCACTGGCTCTGAGCTCTACCCCT
GAACCTCAGACTTTCTTTGTCATTTCTATCTTTTTTTTCGACCGGGCCCA
GTCTTTTTtgttgagttttgatgtgaacTCTACACAATCTCCGACagttg
agttttgatgtgaacTCTTACACAATCTCCGtctgtttttgagtttttga
tgtGAACTCTTACACAATTACCCAAGCGTTGTCGATAGTACCATATTCAA
CTTTCCGACACTTTTTCCactcattttttgagttttgaactGACTCGACA
GCTTTTTGTAATCTTGAACTTACTACGCATTAACGAAGCCACTTTTTGTG
ACAACTTTCAGAGGCCGTTTGGTTCGCTGATTACTACCTGGGGCGCAGTC
ATTTCGTGAGTGTAGGTCAGTCTACTCAGCGTCCCAGGGGTGGATTTTTA
TCGAGATGAAGAGAGCCATACACCACTCTAGAATCTGATTTTTACCACCA
AATTACTCTATATTCGCTCAGATAtgacatcaaaacagttttgctttgtt
tttcgCTTGTGGTTTGTAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020457XLOC_020457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035112-exon-sc0001253-1491911889:12960..13582TCONS_00035112-exon-sc0001253-1491911889:12960..13582Clytia hemisphaericaexon
TCONS_00035112-exon-sc0001253-1510915933:12960..13582TCONS_00035112-exon-sc0001253-1510915933:12960..13582Clytia hemisphaericaexon
TCONS_00035112-exon-sc0001253-1575043694:12960..13582TCONS_00035112-exon-sc0001253-1575043694:12960..13582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001253supercontigsc0001253:12960..13582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11205	0.0468025	0.419996	0.187714	2.17109	1.7401	0.731878	1.22181	2.54718	3.43666	3.26332	4.49355	2.67128	2.60328	0.738616	0.572397	0.37012	0.363443	0.849216	0.629384	1.12166	0.655203	0.110358	0.137235	2.57392	1.1567	2.02907	0.941675	0.223736	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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