TCONS_00035106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035106
Unique NameTCONS_00035106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035106 ID=TCONS_00035106|Name=TCONS_00035106|organism=Clytia hemisphaerica|type=transcript|length=1539bp
GTTGAGAAACTGCTGAGTAGGGCGAGAGAAAAAGACGATTTCAAAGATCA
CGCTGTTGCAGATTTCGTCCAAAGTACACATAATGTAACAGCACAGGAAT
TAATTGATAAACATTGTCAATATCATAGAACATGTTATATGTTATATACA
AACGTGGAGAAGTTGAATCGAGCAAGAAAACGTTTCTCAACGTCCGTCGA
AACCGGAGACCCTTCTGTTAGTAAACGGAAGGCAGGAAGACCAAGCGTGG
TGAATGTGGAAAATGAGGATGAAGGTGTTCGAACGAGATCAATGACAGAG
CCATATGACAAGACTAAGTGCATTATATATGTCAGCTGCCAACAAGTGAT
AAATTACACCAGGTGATGTTTCACTCTTCTGGTGCCAACATGCTTTCGGT
CTCAAAACAAATGGACGATAAGTCGTTTTTCCGGCGTATGAACACAATTT
TCTGTGCTGAAGATGGGGTGGCAAATGATTTTATGTACCACCTTATGTGT
TGGGCTAACTGTAAACGACAAACCGAAACAAAAACGAAGCCGTTCGATGA
TTCTATTCGAACCATTTCTGATATCGAATTGCTAAACTTTATCCGATTGA
ATGTAAAGCCAGGCGGTCAAACTATTAATATGAATAAAGTTAACAGTGTT
TACAAGAAAATATTGGTGGAAAACGGAGAATGTACTGAAGTCGCATCAAC
AGACAAAAGGAAATACCTCAAATCATTGATTTCGGAAAACATTGAAGAAA
TCACATTtgtaaaagatcaaaatccatcAAAACCGGAACAATTGTTTGTA
GATTTGACAGTTAAGGACTCTTATTCTGTCGATGACTTAACAACAACTAG
AGAcataaaatctatgctgaaatTAGCGAAAGAGATACGAAAAGAAATTA
TTAACGAAAATTGGAATTTCAACCGGTGACTACAGCTCGTACAAAGACTC
GCCAAAGCTTTCCATACTTTTGAAATGGATTCTTTTCGGTCCGTTAGCTT
TGGATAGTAAGAAAGAAACTCGTGAAatagagaaagtgttgaaaataact
TCGCAATTTATATCACAGAACGTTAAAACAAATCGTCAAACAAATTATCA
TTtacaaaatcaaagtcaaaactTTTCATCTACTATTGAAACACCGTTGA
ATGTTGGGTCTGGAATAGCTTTCTATCATGCAACTCGAAGTAAAAAACTG
GTGGATTTCCTGTCAGACTTAAATGTGAGTGCAAATTACAAGAAGGTTCT
TGATATGAAATCAGATATTGCACAATCAGTACTTCAAAGATGTATCAAAC
TAGACGGCGTTTTTATTCCCCGGAATATTGTTGAAGATTTACCATGTTGG
TTTGCGATTGATAACACTGATTTGAAGTTGGATACCCCAGATGGAAAACG
TCAACTCCATGGAACTGCTACTGTCGTTTATCAAGCGAAGGCTAGTATTG
agGGTATCACTCAAACCAAATTTGATCGAAAGCCAGACGGAAAGAAACTT
CAGTTCTCTACACGGAACTACAATTGTGCAGAACCTGCC
Run BLAST on NCBI

protein sequence of TCONS_00035106-protein

>TCONS_00035106-protein ID=TCONS_00035106-protein|Name=TCONS_00035106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MFHSSGANMLSVSKQMDDKSFFRRMNTIFCAEDGVANDFMYHLMCWANCK
RQTETKTKPFDDSIRTISDIELLNFIRLNVKPGGQTINMNKVNSVYKKIL
VENGECTEVASTDKRKYLKSLISENIEEITFVKDQNPSKPEQLFVDLTVK
DSYSVDDLTTTRDIKSMLKLAKEIRKEIINENWNFNR
Run BLAST on NCBI

transcript from alignment at sc0001252:3885..5750-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035106 ID=TCONS_00035106|Name=TCONS_00035106|organism=Clytia hemisphaerica|type=transcript|length=1866bp|location=Sequence derived from alignment at sc0001252:3885..5750- (Clytia hemisphaerica)
GTTGAGAAACTGCTGAGTAGGGCGAGAGAAAAAGACGATTTCAAAGATCA
CGCTGTTGCAGATTTCGTCCAAAGTACACATAATGTAACAGCACAGGAAT
TAATTGATAAACATTGTCAATATCATAGAACATGTTATATGTTATATACA
AACGTGGAGAAGTTGAATCGAGCAAGAAAACGTTTCTCAACGTCCGTCGA
AACCGGAGACCCTTCTGTTAGTAAACGGAAGGCAGGAAGACCAAGCGTGG
TGAATGTGGAAAATGAGGATGAAGGTGTTCGAACGAGATCAATGACAGAG
CCATATGACAAGACTAAGTGCATTATATATGTCAGCTGCCAACAAGTGAT
AAATTACACCAGGTGATGTTTCACTCTTCTGGTGCCAACATGCTTTCGGT
CTCAAAACAAATGGACGATAAGTCGTTTTTCCGGCGTATGAACACAATTT
TCTGTGCTGAAGATGGGGTGGCAAATGATTTTATGTACCACCTTATGTGT
TGGGCTAACTGTAAACGACAAACCGAAACAAAAACGAAGCCGTTCGATGA
TTCTATTCGAACCATTTCTGATATCGAATTGCTAAACTTTATCCGATTGA
ATGTAAAGCCAGGCGGTCAAACTATTAATATGAATAAAGTTAACAGTGTT
TACAAGAAAATATTGGTGGAAAACGGAGAATGTACTGAAGTCGCATCAAC
AGACAAAAGGAAATACCTCAAATCATTGATTTCGGAAAACATTGAAGAAA
TCACATTTGTAAAAGATCAAAATCCATCAAAACCGGAACAATTGTTTGTA
GATTTGACAGTTAAGGACTCTTATTCTGTCGATGACTTAACAACAACTAG
AGACATAAAATCTATGCTGAAATTAGCGAAAGAGATACGAAAAGAAATTA
TTAACGAAAATTGGAATTTCAACCGGTGACTACAGCTCGTACAAAGACTC
GCCAAAGCTTTCCATACTTTTGAAATGGATTCTTTTCGGTCCGTTAGCTT
TGGATAGTAAGAAAGAAACTCGTGAAATAGAGAAAGTGTTGAAAATAACT
TCGCAATTTATATCACAGAACGTTAAAACAAATCGTCAAACAAATTATCA
TTTACAAAATCAAAGTCAAAACTTTTCATCTACTATTGAAACACCGTTGA
ATGTTGGGTCTGGAATAGCTTTCTATCATGCAACTCGAAGTAAAAAACTG
GTGGATTTCCTGTCAGACTTAAATGTGAGTGCAAATTACAAGAAGGTTCT
TGATATGAAATCAGATATTGCACAATCAGTACTTCAAAGATGTATCAAAC
TAGACGGCGTTTTTATTCCCCGGAATATTGTTGAAGATTTACCATGTTGG
TTTGCGATTGATAACACTGATTTGAAGTTGGATACCCCAGATGGAAAACG
TCAACTCCATGGAACTGCTACTGTCGTTTATCAAGCGAAGGCTAGTATTG
AGGTAAGTTTGAAAAAAGCAACTTTAATTTTGAGAATCGCCACTGGGATT
TTGAGGTATAAATGATATAGTTGGAAACCCCTACCTATTAACTGGAAATA
ATAAGTTTGTAAAAATATTGTCGGATAACTTGACAGTAAGCATTTAATTT
TTAGTTTTCAATCATGTTTCGATATTTCTATCATCATCAGTGTATTAGTT
AAAACTGGAAATTTCACGTTGGCATTTAACGTCCTCTCGTTTCATTCCCA
CCCACAGAAATGTTCTCACCGGGTAACTGAGACAAGGGTGTGCTAATAGG
TTATAATGTTATTGATATCGTGGTTTCAGGGTATCACTCAAACCAAATTT
GATCGAAAGCCAGACGGAAAGAAACTTCAGTTCTCTACACGGAACTACAA
TTGTGCAGAACCTGCC

Coding sequence (CDS) from alignment at sc0001252:3885..5750-

>TCONS_00035106 ID=TCONS_00035106|Name=TCONS_00035106|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0001252:3885..5750- (Clytia hemisphaerica)
ATGTTTCACTCTTCTGGTGCCAACATGCTTTCGGTCTCAAAACAAATGGA
CGATAAGTCGTTTTTCCGGCGTATGAACACAATTTTCTGTGCTGAAGATG
GGGTGGCAAATGATTTTATGTACCACCTTATGTGTTGGGCTAACTGTAAA
CGACAAACCGAAACAAAAACGAAGCCGTTCGATGATTCTATTCGAACCAT
TTCTGATATCGAATTGCTAAACTTTATCCGATTGAATGTAAAGCCAGGCG
GTCAAACTATTAATATGAATAAAGTTAACAGTGTTTACAAGAAAATATTG
GTGGAAAACGGAGAATGTACTGAAGTCGCATCAACAGACAAAAGGAAATA
CCTCAAATCATTGATTTCGGAAAACATTGAAGAAATCACATTTGTAAAAG
ATCAAAATCCATCAAAACCGGAACAATTGTTTGTAGATTTGACAGTTAAG
GACTCTTATTCTGTCGATGACTTAACAACAACTAGAGACATAAAATCTAT
GCTGAAATTAGCGAAAGAGATACGAAAAGAAATTATTAACGAAAATTGGA
ATTTCAACCGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020452XLOC_020452Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035106-proteinTCONS_00035106-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035106-exon-sc0001252-1575043694:4299..5750TCONS_00035106-exon-sc0001252-1575043694:4299..5750Clytia hemisphaericaexon
TCONS_00035106-exon-sc0001252-1575043694:3885..3971TCONS_00035106-exon-sc0001252-1575043694:3885..3971Clytia hemisphaericaexon
TCONS_00035106-exon-sc0001252-1510915933:4299..5750TCONS_00035106-exon-sc0001252-1510915933:4299..5750Clytia hemisphaericaexon
TCONS_00035106-exon-sc0001252-1510915933:3885..3971TCONS_00035106-exon-sc0001252-1510915933:3885..3971Clytia hemisphaericaexon
TCONS_00035106-exon-sc0001252-1491911889:4299..5750TCONS_00035106-exon-sc0001252-1491911889:4299..5750Clytia hemisphaericaexon
TCONS_00035106-exon-sc0001252-1491911889:3885..3971TCONS_00035106-exon-sc0001252-1491911889:3885..3971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001252supercontigsc0001252:3885..5750 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0576986	0.15584	0.120811	0	0.899318	0.51167	0.951977	0.92712	0.247264	0.501179	0.605248	0.592686	0.534441	0.368478	0.0302939	0.03251	0.0200248	0.225773	0	0	0.12361	0.0754794	0.06117	0	2.00478	2.87475	0.0731534	0.0390357	0.0296072	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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