TCONS_00035105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035105
Unique NameTCONS_00035105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035105 ID=TCONS_00035105|Name=TCONS_00035105|organism=Clytia hemisphaerica|type=transcript|length=228bp
cggaaatcttgaaaattctctaggaaaatgaaagaaatttgcgaaaaaag
agGAGTATTCGAAATTATTTTGAATGCCAAAATCAGTTCCATTAAGATAA
GgacttaaaaaataattttaaaaaataaaaaaataaaaaacagattGGCA
TACCAACTACAAAGACTTTCTTTTGTTCTTCTCACTTTTAGCGCTTTTAG
GTGCATACTTTAAAACGTTTTTGACACA
Run BLAST on NCBI

transcript from alignment at sc0001250:60600..60827

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035105 ID=TCONS_00035105|Name=TCONS_00035105|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at sc0001250:60600..60827 (Clytia hemisphaerica)
TGTGTCAAAAACGTTTTAAAGTATGCACCTAAAAGCGCTAAAAGTGAGAA
GAACAAAAGAAAGTCTTTGTAGTTGGTATGCCaatctgttttttattttt
ttattttttaaaattattttttaagtcCTTATCTTAATGGAACTGATTTT
GGCATTCAAAATAATTTCGAATACTCctcttttttcgcaaatttctttca
ttttcctagagaattttcaagatttccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020451XLOC_020451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035105-exon-sc0001250-1491911889:60600..60827TCONS_00035105-exon-sc0001250-1491911889:60600..60827Clytia hemisphaericaexon
TCONS_00035105-exon-sc0001250-1510915933:60600..60827TCONS_00035105-exon-sc0001250-1510915933:60600..60827Clytia hemisphaericaexon
TCONS_00035105-exon-sc0001250-1575043694:60600..60827TCONS_00035105-exon-sc0001250-1575043694:60600..60827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001250supercontigsc0001250:60600..60827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	23.5302	4.64847	2.80409	2.62516	0	0	0	0	0	0	0	0	0	0	0	0	1.05438	0	1.25038	1.13677	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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