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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035104 ID=TCONS_00035104|Name=TCONS_00035104|organism=Clytia hemisphaerica|type=transcript|length=3113bp
gaaaatttgaaaattattttgtgtTGGAATTAGTTTTTCGCAAATAAGAC
TGAATATTCTTTcgcaaatatttttaaatttgtgagTCATAGCTATTTTA
TTCAACATTCCAATAAACATACTAATAAAAGAGTAACACTAAGATTCAAT
GTCATGACAAAGTGAAGATAGATACAAATAATTCTTGAAGGGAAGAGCTA
TGGCTTTCCTAACTAAATCTGAACGTGTTAAATTCATTGTCTCAAAGTTT
TTTCCAGATTTTATAAAGGCAACATTGAAAAGCTTTGAATTTGAAGGATC
GGTGAAAACATTATCATAAAACTGTTGCTTGTACACATCACATAACATTT
TGCCATCTCTTAAAACCTCTTTGATTTGTAAAAAGTGTCCAGACCTCAAA
AGAAACCATGAGTCTTTCCCCCGGGTGGAAATAACTACTTTGTGACTGCT
AGATTTTCTCTCTTTGATATTAAATTCTTCAAGTTCTGAGATTCGCTTCC
CTATTTGTGACAGTGGATTTTGGGCTTTCCTGACAAATTTCTTGATAATC
TGTAAATAATCCTCGAATGGAAATGAGCTGATTTCATCCAATGAACAATT
AAACATTTCAGAATCGTCTTTCAAGTGGATAAGGTTGTGTACATTATACA
CAGGAAAAGTTTTGCCATAGATTTTTACACTTTGgtttacaaaataaaca
agtaAGTCATGTGCGTAAGACAGATTAGAGTTTCTAGATGTATCATTTGT
GTCAAGAAGAATTCGTAGTGCCAGTGTTAATGATAAGAAATGTGTATAAG
TATCTTTGTCAATAACGCTCTTTAAAACAATGGGTCCGGTATACAacaaa
aattggcggaattcaGTAGCTTTCCATCGTTTTACTTCTTTAAGGCTTCG
AGGCTGGCGAACAAATTCGGATGGAAATTTTCCATTGTAGCTTTCCAACT
GATTAGAAATGACGGACAACTGCTTTTCTGACAGTTTACTAATTCTAGGA
CCTTCTTTCATAAAAGAGACAAGTATTCTTTTAACAACCCCTAGGCATAT
AAGGTGCATGTAGTCAAGTACAAACTGCCGGGTACAATCGATCTGATAGT
CCACAAGTGGTGTTCTACCAATTTGATGAGTGCCCAAGTACCCAAGTTGC
TTGAAAGTCTGATCTCTACGTTGGACACAATTTGCTTGTAACATTAACAT
TCTGTGGCATTCATATACACCTAAAATTTCGCACCTCTCGCAGGAATTAT
ATCCATTGTgcgatttgatattttttacaaattgtCTAGCTGGTGCATCA
CAAATAAAGACACtgatatcaaattcaaaatgctTCTCTCCAAGTGAAAT
TCCACTTTCTTTAAGAAGAGCATATTCCTCAAGAAAATCCTTTAAAAATT
CTTCCACACTCGCTGGCTTTCCTTTGCCATGCCACAATGAAATTGTAAAC
ACCGGAAACTTtccaaattttcccaaaatcggCCACACTTGATTAGGGGA
GGATTTAAACAATGGCACACCATCTATATTAACAAGAAGAGATACATTTT
GTGGTAGATCCAGATCACAGTTTCCATTAATGACTCTTTGTATGCCTTTG
AGAATTCCAAGGTAAATGTAATCACCCCCACATTTATCAGAAATTTGCAA
TTTACGAGGTGTTTTTAACAGGGTTTGGGTAGACTTGGGTAAAGATTCAT
GTCCATTTTTTTTTAGTAGGGCTAATAGTCCGTCACTTGCATTTCTTGTG
ATTTTGTTTATTAAAACCCATTCAGCAAGCTCTGTTTGGAAAGAAGTATC
TTTAACAGGTTCTTCCTCTTGAATAGCCTGTTCAAGGAAATCTTCATTTC
GCAAAAGCTCTTCTAATTTTTCATCTAAATGTTCACTCTCAATATCATTA
TAGTAGTCCCAATCATTCTCTGGGTTATCGAAGTCTTCAATCTCATTATT
ACCATTATAATGATTTTCCGTATTACTTTCATTGGCGACACTGCTTGAAA
ACTCTGCCCCTGTAGTTGTATCATCAGGCTTATATTGAGAGTTCCTATCT
TCAGCTTCAAGAAATTTCTTTAAACGAGCATTGTTTTCCCTCCATTTTTT
TTGGTAGGCAGAGGTACTTTTTCTCTTCCTTGATTGTTTCATTAACTTCA
AgagcaaaagaaaagaaaagatgttTTTTAGGAGAATTCAAATGTCAAAT
CTTGTCACCACAAAGGCTAGTAGTCAGGACAAGAGTGAagtgttttccaa
aaaatatcattcatTTCTGTGCCAGTCTCCAGTGGTCAAAGCACCCAGCC
TACGTCCCACCCGCCTCTTAAAAAAAACCTATATGATGATTTGAGCCAAC
ATTTTATTGTTGGAAAGGGCAAAAACGTAGCGCAAAggtttgtttttgaa
ttaaacaACTAATCGAAGGCGCAATCGAATATAATCGAAGTgctaagaat
caaatttaatcgaATTTATCAGGAAAAATGTAGAATTCGATAAGCGTTCG
ATTATATTCGGTAATCGAATTTTAATTGTTGATTGACTTCAATTATTTTC
GATtaattcgacaatcgaattatttgattgacattgcCTGGAAATTAGca
catatttttaaaattttggtgaattttgcaGAATATTAAGACTGAAAATC
CTATcagacggaagaacttttaacactcGAGTCTTTTATACATCAGGAAG
GAACGACAGAACACGGTGGTGCAAGGTAATATGAGACCATAAGAAgtaat
actttttggaagaatcttTTGGCTGGTAAAAGGTGAAGAGAGGATCTTAA
CTTAAGAGTTCTCTTTTTGGGACAACCCCACAATGCTTTTTTAACATTAA
AGGTATTTTTACAACTCAACAATGAAGAATAACACCACAAGGAAAATTTT
GCTATTCGTCCGACTACTTGCAAGATTCAAGCATCGAAACGTCGAATCTT
ATCACCACAAGGGCTAGTCAGGACAAGGGCAAAGTGTTTtcccaaaaata
aaatttctgttTGGCTTTCGAGAAATAATACACTAAGCGACTGTTGATGA
caatttatctttttattttacacaGCTGTGAAGGCTGCTTAAAGTCAGAC
AGGTAGGGGAGGG Run BLAST on NCBI protein sequence of TCONS_00035104-protein >TCONS_00035104-protein ID=TCONS_00035104-protein|Name=TCONS_00035104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=667bp
MKQSRKRKSTSAYQKKWRENNARLKKFLEAEDRNSQYKPDDTTTGAEFSS
SVANESNTENHYNGNNEIEDFDNPENDWDYYNDIESEHLDEKLEELLRNE
DFLEQAIQEEEPVKDTSFQTELAEWVLINKITRNASDGLLALLKKNGHES
LPKSTQTLLKTPRKLQISDKCGGDYIYLGILKGIQRVINGNCDLDLPQNV
SLLVNIDGVPLFKSSPNQVWPILGKFGKFPVFTISLWHGKGKPASVEEFL
KDFLEEYALLKESGISLGEKHFEFDISVFICDAPARQFVKNIKSHNGYNS
CERCEILGVYECHRMLMLQANCVQRRDQTFKQLGYLGTHQIGRTPLVDYQ
IDCTRQFVLDYMHLICLGVVKRILVSFMKEGPRISKLSEKQLSVISNQLE
SYNGKFPSEFVRQPRSLKEVKRWKATEFRQFLLYTGPIVLKSVIDKDTYT
HFLSLTLALRILLDTNDTSRNSNLSYAHDLLVYFVNQSVKIYGKTFPVYN
VHNLIHLKDDSEMFNCSLDEISSFPFEDYLQIIKKFVRKAQNPLSQIGKR
ISELEEFNIKERKSSSHKVVISTRGKDSWFLLRSGHFLQIKEVLRDGKML
CDVYKQQFYDNVFTDPSNSKLFNVAFIKSGKNFETMNLTRSDLVRKAIAL
PFKNYLYLSSLCHDIES Run BLAST on NCBI transcript from alignment at sc0001250:54179..57291 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035104 ID=TCONS_00035104|Name=TCONS_00035104|organism=Clytia hemisphaerica|type=transcript|length=3113bp|location=Sequence derived from alignment at sc0001250:54179..57291 (Clytia hemisphaerica)
CCCTCCCCTACCTGTCTGACTTTAAGCAGCCTTCACAGCtgtgtaaaata
aaaagataaattgTCATCAACAGTCGCTTAGTGTATTATTTCTCGAAAGC
CAaacagaaattttatttttgggaAAACACTTTGCCCTTGTCCTGACTAG
CCCTTGTGGTGATAAGATTCGACGTTTCGATGCTTGAATCTTGCAAGTAG
TCGGACGAATAGCAAAATTTTCCTTGTGGTGTTATTCTTCATTGTTGAGT
TGTAAAAATACCTTTAATGTTAAAAAAGCATTGTGGGGTTGTCCCAAAAA
GAGAACTCTTAAGTTAAGATCCTCTCTTCACCTTTTACCAGCCAAaagat
tcttccaaaaagtattacTTCTTATGGTCTCATATTACCTTGCACCACCG
TGTTCTGTCGTTCCTTCCTGATGTATAAAAGACTCgagtgttaaaagttc
ttccgtctgATAGGATTTTCAGTCTTAATATTCtgcaaaattcaccaaaa
ttttaaaaatatgtgCTAATTTCCAGgcaatgtcaatcaaataattcgat
tgtcgaattaATCGAAAATAATTGAAGTCAATCAACAATTAAAATTCGAT
TACCGAATATAATCGAACGCTTATCGAATTCTACATTTTTCCTGATAAAT
tcgattaaatttgattcttagcACTTCGATTATATTCGATTGCGCCTTCG
ATTAGTtgtttaattcaaaaacaaaccTTTGCGCTACGTTTTTGCCCTTT
CCAACAATAAAATGTTGGCTCAAATCATCATATAGGTTTTTTTTAAGAGG
CGGGTGGGACGTAGGCTGGGTGCTTTGACCACTGGAGACTGGCACAGAAa
tgaatgatattttttggaaaacactTCACTCTTGTCCTGACTACTAGCCT
TTGTGGTGACAAGATTTGACATTTGAATTCTCCTAAAAaacatcttttct
tttcttttgctcTTGAAGTTAATGAAACAATCAAGGAAGAGAAAAAGTAC
CTCTGCCTACCAAAAAAAATGGAGGGAAAACAATGCTCGTTTAAAGAAAT
TTCTTGAAGCTGAAGATAGGAACTCTCAATATAAGCCTGATGATACAACT
ACAGGGGCAGAGTTTTCAAGCAGTGTCGCCAATGAAAGTAATACGGAAAA
TCATTATAATGGTAATAATGAGATTGAAGACTTCGATAACCCAGAGAATG
ATTGGGACTACTATAATGATATTGAGAGTGAACATTTAGATGAAAAATTA
GAAGAGCTTTTGCGAAATGAAGATTTCCTTGAACAGGCTATTCAAGAGGA
AGAACCTGTTAAAGATACTTCTTTCCAAACAGAGCTTGCTGAATGGGTTT
TAATAAACAAAATCACAAGAAATGCAAGTGACGGACTATTAGCCCTACTA
AAAAAAAATGGACATGAATCTTTACCCAAGTCTACCCAAACCCTGTTAAA
AACACCTCGTAAATTGCAAATTTCTGATAAATGTGGGGGTGATTACATTT
ACCTTGGAATTCTCAAAGGCATACAAAGAGTCATTAATGGAAACTGTGAT
CTGGATCTACCACAAAATGTATCTCTTCTTGTTAATATAGATGGTGTGCC
ATTGTTTAAATCCTCCCCTAATCAAGTGTGGccgattttgggaaaatttg
gaAAGTTTCCGGTGTTTACAATTTCATTGTGGCATGGCAAAGGAAAGCCA
GCGAGTGTGGAAGAATTTTTAAAGGATTTTCTTGAGGAATATGCTCTTCT
TAAAGAAAGTGGAATTTCACTTGGAGAGAagcattttgaatttgatatca
GTGTCTTTATTTGTGATGCACCAGCTAGacaatttgtaaaaaatatcaaa
tcgcACAATGGATATAATTCCTGCGAGAGGTGCGAAATTTTAGGTGTATA
TGAATGCCACAGAATGTTAATGTTACAAGCAAATTGTGTCCAACGTAGAG
ATCAGACTTTCAAGCAACTTGGGTACTTGGGCACTCATCAAATTGGTAGA
ACACCACTTGTGGACTATCAGATCGATTGTACCCGGCAGTTTGTACTTGA
CTACATGCACCTTATATGCCTAGGGGTTGTTAAAAGAATACTTGTCTCTT
TTATGAAAGAAGGTCCTAGAATTAGTAAACTGTCAGAAAAGCAGTTGTCC
GTCATTTCTAATCAGTTGGAAAGCTACAATGGAAAATTTCCATCCGAATT
TGTTCGCCAGCCTCGAAGCCTTAAAGAAGTAAAACGATGGAAAGCTACtg
aattccgccaatttttgtTGTATACCGGACCCATTGTTTTAAAGAGCGTT
ATTGACAAAGATACTTATACACATTTCTTATCATTAACACTGGCACTACG
AATTCTTCTTGACACAAATGATACATCTAGAAACTCTAATCTGTCTTACG
CACATGACTtacttgtttattttgtaaacCAAAGTGTAAAAATCTATGGC
AAAACTTTTCCTGTGTATAATGTACACAACCTTATCCACTTGAAAGACGA
TTCTGAAATGTTTAATTGTTCATTGGATGAAATCAGCTCATTTCCATTCG
AGGATTATTTACAGATTATCAAGAAATTTGTCAGGAAAGCCCAAAATCCA
CTGTCACAAATAGGGAAGCGAATCTCAGAACTTGAAGAATTTAATATCAA
AGAGAGAAAATCTAGCAGTCACAAAGTAGTTATTTCCACCCGGGGGAAAG
ACTCATGGTTTCTTTTGAGGTCTGGACACTTTTTACAAATCAAAGAGGTT
TTAAGAGATGGCAAAATGTTATGTGATGTGTACAAGCAACAGTTTTATGA
TAATGTTTTCACCGATCCTTCAAATTCAAAGCTTTTCAATGTTGCCTTTA
TAAAATCTGGAAAAAACTTTGAGACAATGAATTTAACACGTTCAGATTTA
GTTAGGAAAGCCATAGCTCTTCCCTTCAAGAATTATTTGTATCTATCTTC
ACTTTGTCATGACATTGAATCTTAGTGTTACTCTTTTATTAGTATGTTTA
TTGGAATGTTGAATAAAATAGCTATGActcacaaatttaaaaatatttgc
gAAAGAATATTCAGTCTTATTTGCGAAAAACTAATTCCAacacaaaataa
ttttcaaattttc Coding sequence (CDS) from alignment at sc0001250:54179..57291 >TCONS_00035104 ID=TCONS_00035104|Name=TCONS_00035104|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0001250:54179..57291 (Clytia hemisphaerica)
ATGAAACAATCAAGGAAGAGAAAAAGTACCTCTGCCTACCAAAAAAAATG
GAGGGAAAACAATGCTCGTTTAAAGAAATTTCTTGAAGCTGAAGATAGGA
ACTCTCAATATAAGCCTGATGATACAACTACAGGGGCAGAGTTTTCAAGC
AGTGTCGCCAATGAAAGTAATACGGAAAATCATTATAATGGTAATAATGA
GATTGAAGACTTCGATAACCCAGAGAATGATTGGGACTACTATAATGATA
TTGAGAGTGAACATTTAGATGAAAAATTAGAAGAGCTTTTGCGAAATGAA
GATTTCCTTGAACAGGCTATTCAAGAGGAAGAACCTGTTAAAGATACTTC
TTTCCAAACAGAGCTTGCTGAATGGGTTTTAATAAACAAAATCACAAGAA
ATGCAAGTGACGGACTATTAGCCCTACTAAAAAAAAATGGACATGAATCT
TTACCCAAGTCTACCCAAACCCTGTTAAAAACACCTCGTAAATTGCAAAT
TTCTGATAAATGTGGGGGTGATTACATTTACCTTGGAATTCTCAAAGGCA
TACAAAGAGTCATTAATGGAAACTGTGATCTGGATCTACCACAAAATGTA
TCTCTTCTTGTTAATATAGATGGTGTGCCATTGTTTAAATCCTCCCCTAA
TCAAGTGTGGccgattttgggaaaatttggaAAGTTTCCGGTGTTTACAA
TTTCATTGTGGCATGGCAAAGGAAAGCCAGCGAGTGTGGAAGAATTTTTA
AAGGATTTTCTTGAGGAATATGCTCTTCTTAAAGAAAGTGGAATTTCACT
TGGAGAGAagcattttgaatttgatatcaGTGTCTTTATTTGTGATGCAC
CAGCTAGacaatttgtaaaaaatatcaaatcgcACAATGGATATAATTCC
TGCGAGAGGTGCGAAATTTTAGGTGTATATGAATGCCACAGAATGTTAAT
GTTACAAGCAAATTGTGTCCAACGTAGAGATCAGACTTTCAAGCAACTTG
GGTACTTGGGCACTCATCAAATTGGTAGAACACCACTTGTGGACTATCAG
ATCGATTGTACCCGGCAGTTTGTACTTGACTACATGCACCTTATATGCCT
AGGGGTTGTTAAAAGAATACTTGTCTCTTTTATGAAAGAAGGTCCTAGAA
TTAGTAAACTGTCAGAAAAGCAGTTGTCCGTCATTTCTAATCAGTTGGAA
AGCTACAATGGAAAATTTCCATCCGAATTTGTTCGCCAGCCTCGAAGCCT
TAAAGAAGTAAAACGATGGAAAGCTACtgaattccgccaatttttgtTGT
ATACCGGACCCATTGTTTTAAAGAGCGTTATTGACAAAGATACTTATACA
CATTTCTTATCATTAACACTGGCACTACGAATTCTTCTTGACACAAATGA
TACATCTAGAAACTCTAATCTGTCTTACGCACATGACTtacttgtttatt
ttgtaaacCAAAGTGTAAAAATCTATGGCAAAACTTTTCCTGTGTATAAT
GTACACAACCTTATCCACTTGAAAGACGATTCTGAAATGTTTAATTGTTC
ATTGGATGAAATCAGCTCATTTCCATTCGAGGATTATTTACAGATTATCA
AGAAATTTGTCAGGAAAGCCCAAAATCCACTGTCACAAATAGGGAAGCGA
ATCTCAGAACTTGAAGAATTTAATATCAAAGAGAGAAAATCTAGCAGTCA
CAAAGTAGTTATTTCCACCCGGGGGAAAGACTCATGGTTTCTTTTGAGGT
CTGGACACTTTTTACAAATCAAAGAGGTTTTAAGAGATGGCAAAATGTTA
TGTGATGTGTACAAGCAACAGTTTTATGATAATGTTTTCACCGATCCTTC
AAATTCAAAGCTTTTCAATGTTGCCTTTATAAAATCTGGAAAAAACTTTG
AGACAATGAATTTAACACGTTCAGATTTAGTTAGGAAAGCCATAGCTCTT
CCCTTCAAGAATTATTTGTATCTATCTTCACTTTGTCATGACATTGAATC
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035104-exon-sc0001250-1491911889:54179..57291 | TCONS_00035104-exon-sc0001250-1491911889:54179..57291 | Clytia hemisphaerica | exon |
| TCONS_00035104-exon-sc0001250-1510915933:54179..57291 | TCONS_00035104-exon-sc0001250-1510915933:54179..57291 | Clytia hemisphaerica | exon |
| TCONS_00035104-exon-sc0001250-1575043694:54179..57291 | TCONS_00035104-exon-sc0001250-1575043694:54179..57291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0001250 | supercontig | sc0001250:54179..57291 . |
Blast
The following BLAST results are available for this feature:
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