TCONS_00035102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035102
Unique NameTCONS_00035102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length742

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035102 ID=TCONS_00035102|Name=TCONS_00035102|organism=Clytia hemisphaerica|type=transcript|length=742bp
TGTTTCCGTTGTTTCCTTACTACATTTCGAAATTTTAGActgaaagaaaa
gtaaaaatgaattaaaaaggagaaaagaagaAAGTTTACTTTCTTTCATT
TGATTTCAAGCCTTTTATTTAGTTCCATCCTAAGCACAATACATTTTTAT
AAAACGATATAAGCAACTGTTAATAAGCGTCCAACAATAGGAGCACTCGC
ACATAAGAAGACTTGCGACACTCAACACGCAGACTATTGTTTTCTGTTTG
CACTACATAATAGCTCGCAAATTATAATAGGCTTTTGACCTGTTTTAAAT
AGCTTGAGTGTCCCTATTAATTCGAGGCTACGAGTCGCCAATAAATAGGT
TCTCAATAGTGAAAGAAGCCGCTTGCGAGTCTCTGACACGCAAGGTTCGC
GTACGTGTAAAGACATGCGAAAGCCCCACTGTAACGTCAAGCGATGTATA
CCAAAAGTTGTCgccattttttcatcaaagtttttctGTGGCAAAGTCCG
CACTTGGTTGTACCTGTGGCCGTGCTTAAAGTATGCGTTCTTTTAACTta
tgacctttatttaaaaagaaattaaaagcttcACTTGGCGCTAGGTCCGT
GCCGTTCTTTAGGcgtaccaccttctttgcccACTTGTGCGATGTGGTTA
TCGCACAAACAAtaaaaatatgatgtaatgatatcatagcgCAAACCAAT
GGGATATGCGCAGATATGCgagcaaattttcatgtaattCAT
Run BLAST on NCBI

transcript from alignment at sc0001250:107..848

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035102 ID=TCONS_00035102|Name=TCONS_00035102|organism=Clytia hemisphaerica|type=transcript|length=742bp|location=Sequence derived from alignment at sc0001250:107..848 (Clytia hemisphaerica)
ATGaattacatgaaaatttgctcGCATATCTGCGCATATCCCATTGGTTT
GcgctatgatatcattacatcatatttttaTTGTTTGTGCGATAACCACA
TCGCACAAGTgggcaaagaaggtggtacgCCTAAAGAACGGCACGGACCT
AGCGCCAAGTgaagcttttaatttctttttaaataaaggtcataAGTTAA
AAGAACGCATACTTTAAGCACGGCCACAGGTACAACCAAGTGCGGACTTT
GCCACagaaaaactttgatgaaaaaatggcGACAACTTTTGGTATACATC
GCTTGACGTTACAGTGGGGCTTTCGCATGTCTTTACACGTACGCGAACCT
TGCGTGTCAGAGACTCGCAAGCGGCTTCTTTCACTATTGAGAACCTATTT
ATTGGCGACTCGTAGCCTCGAATTAATAGGGACACTCAAGCTATTTAAAA
CAGGTCAAAAGCCTATTATAATTTGCGAGCTATTATGTAGTGCAAACAGA
AAACAATAGTCTGCGTGTTGAGTGTCGCAAGTCTTCTTATGTGCGAGTGC
TCCTATTGTTGGACGCTTATTAACAGTTGCTTATATCGTTTTATAAAAAT
GTATTGTGCTTAGGATGGAACTAAATAAAAGGCTTGAAATCAAATGAAAG
AAAGTAAACTTtcttcttttctcctttttaattcatttttacttttcttt
cagTCTAAAATTTCGAAATGTAGTAAGGAAACAACGGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020448XLOC_020448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035102-exon-sc0001250-1491911889:107..848TCONS_00035102-exon-sc0001250-1491911889:107..848Clytia hemisphaericaexon
TCONS_00035102-exon-sc0001250-1510915933:107..848TCONS_00035102-exon-sc0001250-1510915933:107..848Clytia hemisphaericaexon
TCONS_00035102-exon-sc0001250-1575043694:107..848TCONS_00035102-exon-sc0001250-1575043694:107..848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001250supercontigsc0001250:107..848 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29371	1.21391	2.31059	1.08579	1.89978	2.37698	1.73382	1.40791	0.433174	1.46554	1.34873	1.40221	1.00167	1.5395	0.762505	1.07249	0.555222	0.822679	1.05644	1.09126	1.37082	0.816519	0	0.547826	0.63947	0.997252	1.8314	1.10482	1.32127	1.25917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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