TCONS_00035101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035101
Unique NameTCONS_00035101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035101 ID=TCONS_00035101|Name=TCONS_00035101|organism=Clytia hemisphaerica|type=transcript|length=1333bp
GCGGAACAGAGACTGGAGGAAAAGACATTGAGTGGAAAGGATAATCTAAA
CGAAAAATGTGACCCAGCATCTATGACACCGCAAAGgAGAAAGAAGCACA
CCCGTAGTACAGAAGggaagaaaaagagaaataaaagaACAACGAACcgt
caaaaaatcaataaagcAAAATTAAAATGCCGCTTAGAGATGGAGAAAAA
GGATGACACAATTCAAAGATTGACTTATCTACTTGAGCTTGAGAAGTCTT
CAAAGAAAACCAGAACAGCACTTCCTAAATTATCATCCGTTTATGTCAAA
ACCACCAAGGCTACAAATAAACATAGCAATGTCACAGCTTCAAGAGATTT
CATCCTTCAGAAACTTGAGGGTATACCAAAAATAACCAAGGATAACTACG
CCCCTGTTGAATTTTTTGTTGGATCAGGTGTCTTTGGTTGTGTAAAGCTT
GGATATCTTAAATCTTTGGAATTTGTTATTGCAGTGAAACACTTTGATCA
AAAGACTTCTTACAAGTCCATTCTCGCAGAAACCGTCATTCTTTTGACTC
TCTCTGGGAGTAGATTCGTTCCTTTTTGCTACGGGCTACTGGAAAGTTCT
AACGGGATCTTGATGGAATTTTTGGGTAACTCAATGGAATCGTCACACAT
TCCCTTCCCTACTCTAGCATCTTTCCGAAAGACAGGTCAACTTGATATAC
ACAAACTAAAGTTTATTTGCAAGGAAGTAGTATCTGCTATCATGTTTATC
CATGGTAAAGGCATATTGCACAATGACATTAAAGGTGATAATGTAATCGT
AGCTGGTGATAGAATCGTTTTAATTGATTTTGGGAAAGCCACAATGATTA
AGTGTGCCGTCCAGTACAATATTACTCCAGGATCGGAAGAGCAATCAACT
TACAATACCTATCACAGGCATTTGGCTCACGAGCTCCGGAATATATCCTT
GACAAGACAGAGTGTTATGACTGATACATATTCAATTGGGTACATGTTTA
AACATACAGCTTGTTCCATTCCTTACGAACCCATCATACAGCTAGGTCGC
CAAATGAAAGCAGCAACTCTCTCTGCTCGACTAAATTTGGCCACAGCTCT
TAGTTTTTTACAACAGACTTTGTAAATTGTTCTTTGAACTAAATTGTATA
AAGCATTTTATTTTGTCAAATATTCTTCATTGTTGAACAGTTGGGAACAA
TTCTGCTTCAAACTGCTTGTCAGCACATAGTTTCTATGATTAATACTTGC
AAAACTTCCAGCGAAAACataaattgaatattttaaaattcccTAGATAA
TCCATTCCCCTGTTTGACCTAGCTCATCTTACC
Run BLAST on NCBI

protein sequence of TCONS_00035101-protein

>TCONS_00035101-protein ID=TCONS_00035101-protein|Name=TCONS_00035101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
AEQRLEEKTLSGKDNLNEKCDPASMTPQRRKKHTRSTEGKKKRNKRTTNR
QKINKAKLKCRLEMEKKDDTIQRLTYLLELEKSSKKTRTALPKLSSVYVK
TTKATNKHSNVTASRDFILQKLEGIPKITKDNYAPVEFFVGSGVFGCVKL
GYLKSLEFVIAVKHFDQKTSYKSILAETVILLTLSGSRFVPFCYGLLESS
NGILMEFLGNSMESSHIPFPTLASFRKTGQLDIHKLKFICKEVVSAIMFI
HGKGILHNDIKGDNVIVAGDRIVLIDFGKATMIKCAVQYNITPGSEEQST
YNTYHRHLAHELRNISLTRQSVMTDTYSIGYMFKHTACSIPYEPIIQLGR
QMKAATLSARLNLATALSFLQQTL
Run BLAST on NCBI

transcript from alignment at sc0001250:49401..51973-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035101 ID=TCONS_00035101|Name=TCONS_00035101|organism=Clytia hemisphaerica|type=transcript|length=2573bp|location=Sequence derived from alignment at sc0001250:49401..51973- (Clytia hemisphaerica)
GCGGAACAGAGACTGGAGGAAAAGACATTGAGTGGAAAGGATAATCTAAA
CGAAAAATGTGACCCAGCATCTATGACACCGCAAAGGTAATGGAAACCTT
TTCTTGTATCTTAGAATTTTTTTGATAACACTCTTAAAAATAGCAATCAC
AATCAAATGTCTTCACCCGACTGACTTAAAAAAATTCAACAAAAATTAAA
ATAGAGGTCGGTAAAATTGTCCAATTTTTGTTCGCTTTCTTTAGCTTTTA
GCTTTTTACAATTTCATGCTATGAAAGTGCTACATTATCAAAATTTTCAA
AGAATTTCCTATTCTCAGTACGGCATTTTATACCTGGGCGGGATCAGGGG
ACGTCAGCTGATCAAACTATGTCGCTCATTCTCTCCTCTGGCCTGGGTAA
GCGCGTCACTCGATCAAGCGATGGTGTAGTTCGATTGAGCGACATTTTCT
ATCACCACTATTATTCTTTAGTATTTCTGCCTGCTGGCTGCGGCGCAAAC
TTTTGGATGAAATCTCTGTATGAAGTTAATCTCTGAAAAAAAAATTTACA
GTCAAATGAGAGAGCGTCCAAACTACATTTTCACCGTGCGGTTCTCGAGG
TTTCTCAAGTTATTGAGTTACCAAGTTACCAATTGACCCTAATTAATTTC
ATAACTCGTGAAAATTTTAGTTTGAACGCTCATTCCATTGCAAATGTTTT
AGAGGTTACCTTCATGTAGATTTTATCAGCCCAAAAGTTTGCGCCGCAGG
CAAACACAATTAAGAGTAAATATGATAGAAAACCGTCGCGCAATCGTACT
ACACTTTCGCTCAATTGAGCAACGCACGTGCATACCCAGAATGAGCGACG
TAGTGCGATCAGGTGACGTCCCCCGATCCAGGTAAAATGCCGTACTGATT
ATCTGCCTTAAAAGATAAATTTACTTTGTTTGCTGTTTGTTTAAATTTAC
TTTGTTTCGCAAGGATTTAGAATTCAAATGTTTTGAAAGCGTTTAAACTT
TACTGACTGTGATGTGATTGCCGTCTTATATCTTACACAGGCTTGCATCC
TTCAGACCTCTCCTGCTGCAAAATCATGTCATGTGACACAATACCAGGCA
AAATTCTTTAATCCAAACCTTACAGATGTTGAAAATTTCTCAAACTTCAG
AGCTTTATAGTGTGTCCGGAAAATTTATTCATTGGGTGCTTGATGAATAT
CATTGAGGAAACACTTCCTTCTTTGTACAGGAAAACACATGGTTTTGTTC
CCCATTTACAATTTAGTCAGGATGAGATGATAATGGCGGGTGTTGAAAAT
TTAAAGCAGTATTTTCTTCATTTTAGGAGAAAGAAGCACACCCGTAGTAC
AGAAGGGAAGAAAAAGAGAAATAAAAGAACAACGAACCGTCAAAAAATCA
ATAAAGCAAAATTAAAATGCCGCTTAGAGATGGAGAAAAAGGATGACACA
ATTCAAAGATTGACTTATCTACTTGAGCTTGAGAAGTCTTCAAAGAAAAC
CAGAACAGCACTTCCTAAATTATCATCCGTTTATGTCAAAACCACCAAGG
CTACAAATAAACATAGCAATGTCACAGCTTCAAGAGATTTCATCCTTCAG
AAACTTGAGGGTATACCAAAAATAACCAAGGATAACTACGCCCCTGTTGA
ATTTTTTGTTGGATCAGGTGTCTTTGGTTGTGTAAAGCTTGGATATCTTA
AATCTTTGGAATTTGTTATTGCAGTGAAACACTTTGATCAAAAGACTTCT
TACAAGTCCATTCTCGCAGAAACCGTCATTCTTTTGACTCTCTCTGGGAG
TAGATTCGTTCCTTTTTGCTACGGGCTACTGGAAAGTTCTAACGGGATCT
TGATGGAATTTTTGGGTAACTCAATGGAATCGTCACACATTCCCTTCCCT
ACTCTAGCATCTTTCCGAAAGACAGGTCAACTTGATATACACAAACTAAA
GTTTATTTGCAAGGAAGTAGTATCTGCTATCATGTTTATCCATGGTAAAG
GCATATTGCACAATGACATTAAAGGTGATAATGTAATCGTAGCTGGTGAT
AGAATCGTTTTAATTGATTTTGGGAAAGCCACAATGATTAAGTGTGCCGT
CCAGTACAATATTACTCCAGGATCGGAAGAGCAATCAACTTACAATACCT
ATCACAGGCATTTGGCTCACGAGCTCCGGAATATATCCTTGACAAGACAG
AGTGTTATGACTGATACATATTCAATTGGGTACATGTTTAAACATACAGC
TTGTTCCATTCCTTACGAACCCATCATACAGCTAGGTCGCCAAATGAAAG
CAGCAACTCTCTCTGCTCGACTAAATTTGGCCACAGCTCTTAGTTTTTTA
CAACAGACTTTGTAAATTGTTCTTTGAACTAAATTGTATAAAGCATTTTA
TTTTGTCAAATATTCTTCATTGTTGAACAGTTGGGAACAATTCTGCTTCA
AACTGCTTGTCAGCACATAGTTTCTATGATTAATACTTGCAAAACTTCCA
GCGAAAACATAAATTGAATATTTTAAAATTCCCTAGATAATCCATTCCCC
TGTTTGACCTAGCTCATCTTACC

Coding sequence (CDS) from alignment at sc0001250:49401..51973-

>TCONS_00035101 ID=TCONS_00035101|Name=TCONS_00035101|organism=Clytia hemisphaerica|type=CDS|length=2250bp|location=Sequence derived from alignment at sc0001250:49401..51973- (Clytia hemisphaerica)
GAGAAAGAAGCACACCCGTAGTACAGAAGGGAAGAAAAAGAGAAATAAAA
GAACAACGAACCGTCAAAAAATCAATAAAGCAAAATTAAAATGCCGCTTA
GAGATGGAGAAAAAGGATGACACAATTCAAAGATTGACTTATCTACTTGA
GCTTGAGAAGTCTTCAAAGAAAACCAGAACAGCACTTCCTAAATTATCAT
CCGTTTATGTCAAAACCACCAAGGCTACAAATAAACATAGCAATGTCACA
GCTTCAAGAGATTTCATCCTTCAGAAACTTGAGGGTATACCAAAAATAAC
CAAGGATAACTACGCCCCTGTTGAATTTTTTGTTGGATCAGGTGTCTTTG
GTTGTGTAAAGCTTGGATATCTTAAATCTTTGGAATTTGTTATTGCAGTG
AAACACTTTGATCAAAAGACTTCTTACAAGTCCATTCTCGCAGAAACCGT
CATTCTTTTGACTCTCTCTGGGAGTAGATTCGTTCCTTTTTGCTACGGGC
TACTGGAAAGTTCTAACGGGATCTTGATGGAATTTTTGGGTAACTCAATG
GAATCGTCACACATTCCCTTCCCTACTCTAGCATCTTTCCGAAAGACAGG
TCAACTTGATATACACAAACTAAAGTTTATTTGCAAGGAAGTAGTATCTG
CTATCATGTTTATCCATGGTAAAGGCATATTGCACAATGACATTAAAGGT
GATAATGTAATCGTAGCTGGTGATAGAATCGTTTTAATTGATTTTGGGAA
AGCCACAATGATTAAGTGTGCCGTCCAGTACAATATTACTCCAGGATCGG
AAGAGCAATCAACTTACAATACCTATCACAGGCATTTGGCTCACGAGCTC
CGGAATATATCCTTGACAAGACAGAGTGTTATGACTGATACATATTCAAT
TGGGTACATGTTTAAACATACAGCTTGTTCCATTCCTTACGAACCCATCA
TACAGCTAGGTCGCCAAATGAAAGCAGCAACTCTCTCTGCTCGACTAAAT
TTGGCCACAGCTCTTAGTTTTTTACAACAGACTTTGTAAGCGGAACAGAG
ACTGGAGGAAAAGACATTGAGTGGAAAGGATAATCTAAACGAAAAATGTG
ACCCAGCATCTATGACACCGCAAAGGAGAAAGAAGCACACCCGTAGTACA
GAAGGGAAGAAAAAGAGAAATAAAAGAACAACGAACCGTCAAAAAATCAA
TAAAGCAAAATTAAAATGCCGCTTAGAGATGGAGAAAAAGGATGACACAA
TTCAAAGATTGACTTATCTACTTGAGCTTGAGAAGTCTTCAAAGAAAACC
AGAACAGCACTTCCTAAATTATCATCCGTTTATGTCAAAACCACCAAGGC
TACAAATAAACATAGCAATGTCACAGCTTCAAGAGATTTCATCCTTCAGA
AACTTGAGGGTATACCAAAAATAACCAAGGATAACTACGCCCCTGTTGAA
TTTTTTGTTGGATCAGGTGTCTTTGGTTGTGTAAAGCTTGGATATCTTAA
ATCTTTGGAATTTGTTATTGCAGTGAAACACTTTGATCAAAAGACTTCTT
ACAAGTCCATTCTCGCAGAAACCGTCATTCTTTTGACTCTCTCTGGGAGT
AGATTCGTTCCTTTTTGCTACGGGCTACTGGAAAGTTCTAACGGGATCTT
GATGGAATTTTTGGGTAACTCAATGGAATCGTCACACATTCCCTTCCCTA
CTCTAGCATCTTTCCGAAAGACAGGTCAACTTGATATACACAAACTAAAG
TTTATTTGCAAGGAAGTAGTATCTGCTATCATGTTTATCCATGGTAAAGG
CATATTGCACAATGACATTAAAGGTGATAATGTAATCGTAGCTGGTGATA
GAATCGTTTTAATTGATTTTGGGAAAGCCACAATGATTAAGTGTGCCGTC
CAGTACAATATTACTCCAGGATCGGAAGAGCAATCAACTTACAATACCTA
TCACAGGCATTTGGCTCACGAGCTCCGGAATATATCCTTGACAAGACAGA
GTGTTATGACTGATACATATTCAATTGGGTACATGTTTAAACATACAGCT
TGTTCCATTCCTTACGAACCCATCATACAGCTAGGTCGCCAAATGAAAGC
AGCAACTCTCTCTGCTCGACTAAATTTGGCCACAGCTCTTAGTTTTTTAC
AACAGACTTTGTAAGCGGAACAGAGACTGGAGGAAAAGACATTGAGTGGA
AAGGATAATCTAAACGAAAAATGTGACCCAGCATCTATGACACCGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020447XLOC_020447Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035101-proteinTCONS_00035101-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035101-exon-sc0001250-1575043694:51888..51973TCONS_00035101-exon-sc0001250-1575043694:51888..51973Clytia hemisphaericaexon
TCONS_00035101-exon-sc0001250-1575043694:49401..50647TCONS_00035101-exon-sc0001250-1575043694:49401..50647Clytia hemisphaericaexon
TCONS_00035101-exon-sc0001250-1510915933:51888..51973TCONS_00035101-exon-sc0001250-1510915933:51888..51973Clytia hemisphaericaexon
TCONS_00035101-exon-sc0001250-1510915933:49401..50647TCONS_00035101-exon-sc0001250-1510915933:49401..50647Clytia hemisphaericaexon
TCONS_00035101-exon-sc0001250-1491911889:51888..51973TCONS_00035101-exon-sc0001250-1491911889:51888..51973Clytia hemisphaericaexon
TCONS_00035101-exon-sc0001250-1491911889:49401..50647TCONS_00035101-exon-sc0001250-1491911889:49401..50647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001250supercontigsc0001250:49401..51973 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.66284	0.492475	0.178691	0.104893	23.2408	14.6316	7.30445	6.80035	2.47364	5.89737	4.86071	2.4595	1.63738	1.96205	1.05746	1.25022	1.30322	1.04432	0.838826	0.772439	0.854496	1.25038	1.04952	1.3161	1.1861	1.57273	2.16401	0.969987	1.82174	1.1065
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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