TCONS_00035048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035048
Unique NameTCONS_00035048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035048 ID=TCONS_00035048|Name=TCONS_00035048|organism=Clytia hemisphaerica|type=transcript|length=1273bp
AACTCTTGGTCATTCTGTTTGTCCAACATTAATTGAAAATTCTAAACGAA
TTCGTCAGATTCAAGAGCAAGAAGAGAATGTCCACCATTTGGAATATCAA
ATCAGAAGTCTTCAAAAGCTTAAAAGAGAATACTATTTCAGCCATGATGA
AAAAATGGAGATTGAGGATAAAATTGAGGAGTTTGAATTACAAGCAGAAG
GTTTGACTTCCGAAATTGCTTCATCAAGCCTCTCAGAACTGTCTGACACT
GAATCAAACATACAAGATTTTCACAATTATGGAAAATGCTTGGTGAACCT
TGAAAAGTCAACATTAAGAAAAGACGTGCCATTTGGGAACAATGCTGTCC
GGTTAAACACGCGGTACTTCCCTTTCAATGGAGAAACAAGAAATCAAGAT
TTTGAGGCAAAATTGCTTGATATGAAATCCTTTATTGGATCTGAGTTGTA
CAAACTGGGAAGCTCCATTAGCGGAAAGGTTTTACAAGCAGTCCACCAGC
AAACCATTGAACAGCTGGAAGAGAACGATATCACTGGAACTTTGGTCATC
ACTGCAGTATGCAATCATGCAGAAGCAAGCAGATTCTCTCCAATGGTTTT
TGACATGGAGAAAACTGTTGAGTTGTGGAATTCGTCTCATAAAGATGATT
TGTTTGAAGAGACTAAAGATCTAGTAGAAGATTATATTCAAGATACAAAA
TTAAACAATAACAGTATTTCTTACGCAGCAGGGGCTGTCTATGGATCCTG
CTTTGTTGGTATGCTTCACACGTTGAAACAGAAACCAGCTGGATCTCTCA
TTCACCCAAGTTACCAAACAGTCTTGGCACATGTTAGCCTGGTAAGCGAA
GGTTGCATTCCGACTATTGCAAGTGATAAAGTGACGAGAGGTGCAAAAAT
ACTTGCAGAGAAGCAACTAAATGACACCAGAGGAATAATGTTTGCCCTGA
GCTATGCTGATATAGCTAGAGATAATGTTTTGGCTATGAACTCTCTGATG
ACAGCGATAGAAAATTATTCAACTCAAGTACGAGAAGGACAGTGTGGAGC
TCCTATCAAATTCTTTATCGACAGTTTCGATAAAAAGAAATTGGCAGAAA
TGTggctaaagaaaaaagaaagcgAGCTTGACCCCGAATCGGAGATTGGG
ATCGACCAATTCCTTGAAGAATATAAATTTGTATCCGAGCAAAAACTCAG
GCAGCTGATCAATACATCTCGTAAAGACTTGGAAAAGGAAATCGTAACAA
TGGACGAGAAAAAAGAAGACGAG
Run BLAST on NCBI

transcript from alignment at sc0001243:66993..68703+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035048 ID=TCONS_00035048|Name=TCONS_00035048|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at sc0001243:66993..68703+ (Clytia hemisphaerica)
AACTCTTGGTCATTCTGTTTGTCCAACATTAATTGAAAATTCTAAACGAA
TTCGTCAGATTCAAGAGCAAGAAGAGAATGTCCACCATTTGGAATATCAA
ATCAGAAGTCTTCAAAAGCTTAAAAGAGAATACTATTTCAGCCATGATGA
AAAAATGGAGATTGAGGATAAAATTGAGGAGTTTGAATTACAAGCAGAAG
GTTTGACTTCCGAAATTGCTTCATCAAGCCTCTCAGAACTGTCTGACACT
GAATCAAACATACAAGATTTTCACAATTATGGAAAATGCTTGGTGAACCT
TGAAAAGTCAACATTAAGAAAAGACGTGCCATTTGGGAACAATGCTGTCC
GGTTAAACACGCGGTACTTCCCTTTCAATGGAGAAACAAGAAATCAAGAT
TTTGAGGCAAAATTGCTTGATATGAAATCCTTTATTGGATCTGAGTTGTA
CAAACTGGGAAGCTCCATTAGCGGAAAGGTTTTACAAGCAGTCCACCAGC
AAACCATTGAACAGCTGGAAGAGAACGATATCACTGGAACTTTGGTCATC
ACTGCAGTATGCAATCATGCAGAAGCAAGCAGATTCTCTCCAATGGTTTT
TGACATGGAGAAAACTGTTGAGTTGTGGAATTCGTCTCATAAAGATGATT
TGTTTGAAGAGACTAAAGATCTAGTAGAAGATTATATTCAAGATACAAAA
TTAAACAATAACAGTATTTCTTACGCAGCAGGGGCTGTCTATGGATCCTG
CTTTGTTGGTATGCTTCACACGTTGAAACAGAAACCAGCTGGATCTCTCA
TTCACCCAAGTTACCAAACAGTCTTGGCACATGTTAGCCTGGTAAGCGAA
GGTTGCATTCCGACTATTGCAAGTGATAAAGTGACGAGAGGTGCAAAAAT
ACTTGCAGAGAAGCAACTAAATGACACCAGAGGAATAATGTTTGCCCTGA
GCTATGCTGATATAGCTAGAGATAATGTTTTGGCTATGAACTCTCTGATG
ACAGCGATAGAAAATTATTCAACTCAAGTACGAGAAGGACAGTGTGGAGC
TCCTATCAAATTCTTTATCGACAGTTTCGATAAAAAGAAATTGGCAGAAA
TGTggctaaagaaaaaagaaagcgAGCTTGACCCCGAATCGGGTGAGTTT
ATTTGCAACTAAAATTATGAAATCGGTTCGGTCCCATACTGATAGATAAA
GATTCTTTTCAATTGGCTCCAGATTATTACGTTATTAACTGTTTGTGAGT
CAGCACAAAAAGATTTGTTTTAATTGTGGTCACAGGTTGTGTTTCAAAGA
ATGTTTTTTACCCTTCGGCGAATTTTTATTCTTATCCAATGATTTGCGGA
TGTGTATGctcggaaaaaataatttttcctcaaatttgcgaaaatatTAT
GTAAATTTAGCGATTTTTCGACTTTGCAAAGATTCTTTACGCCTAAGCTA
CACTAGCAGGTAGCTGATGCCAAAAAGCAGGGAAATAGTATAGTAAACTT
TTTTGTATCATTCCCTTTTTTAATCACCGAATTTAAAAACGTTTTGAAGC
ATTATAATTTCTTATTCTTGAAACCTATAGAGATTGGGATCGACCAATTC
CTTGAAGAATATAAATTTGTATCCGAGCAAAAACTCAGGCAGCTGATCAA
TACATCTCGTAAAGACTTGGAAAAGGAAATCGTAACAATGGACGAGAAAA
AAGAAGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020398XLOC_020398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035048-exon-sc0001243-1491911889:66993..68134TCONS_00035048-exon-sc0001243-1491911889:66993..68134Clytia hemisphaericaexon
TCONS_00035048-exon-sc0001243-1510915933:66993..68134TCONS_00035048-exon-sc0001243-1510915933:66993..68134Clytia hemisphaericaexon
TCONS_00035048-exon-sc0001243-1575043694:66993..68134TCONS_00035048-exon-sc0001243-1575043694:66993..68134Clytia hemisphaericaexon
TCONS_00035048-exon-sc0001243-1491911889:68573..68703TCONS_00035048-exon-sc0001243-1491911889:68573..68703Clytia hemisphaericaexon
TCONS_00035048-exon-sc0001243-1510915933:68573..68703TCONS_00035048-exon-sc0001243-1510915933:68573..68703Clytia hemisphaericaexon
TCONS_00035048-exon-sc0001243-1575043694:68573..68703TCONS_00035048-exon-sc0001243-1575043694:68573..68703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001243supercontigsc0001243:66993..68703 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190071	0.0495612	0.0671054	0	0.291948	0.558401	1.32392	1.73912	0.90176	0.888244	0.556344	0.489711	0.336352	0.515015	0.427672	0.32398	0.753495	0.635501	0.696975	0.342259	0.305142	0.309361	0.174044	0.390179	0.354931	0.336586	0.455893	0.286152	0.19592	0.220799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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