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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035045 ID=TCONS_00035045|Name=TCONS_00035045|organism=Clytia hemisphaerica|type=transcript|length=3116bp
gagctCAACTTGTTTGATGAGGTAGTATTTAATTTTTAGGTAATACTACG
ATTTGAGAAGTGCAAACGATGTACGCCTTGAAGTTGAAGACAGCGCTGAG
AAATGCAGTATCAATCACTTCAAAGAGATGGTCAAGTGGCGCCATACCCT
TTGATCCTACCATCATCCTTGGAAATGTTGTACATCCTAAGAAATTTGTA
CCATTACAAAACATTGCAGTCTACCAGCAACAGATTGATGGAGAAGAAGA
TGCTATGCACGATAACTTACGCGCAATAAGAAGCCTTCAGATGCTTGCTA
AAGAGCTTGACTATAAGGAAGAAGATAAAAACAAGGAGTCGAAGTTAGGC
AAGTCAATGGATAAGTTGCAAGGTAACATAGATTTGGCTGCTAAAAATTA
TGCagagaaattgcaaaaaaatcttCCCCTTATCAACAAGGAGAAGGCAA
AGATTAGATTGATTGATGATCATGTTGAAAGCCCTTTGGATTTCAACAAG
TCCCTGATCAAAACAGATTTACCAATCAGCTCAAACACCATCAAGTTGAA
TGCTCAATATTTTTCATTCGCCGAAGAAAAGCAAGATAGCCAAGCGACTa
ttatgaaaatgaaatcttTTGTTTCTGGAGAAGTTGATAGTATTTTTGGC
AGCAAAATCAGTGGAAAAGTCTCAAATGCAGTCCATCAACAGACAGCTCA
ACAACACGAGGAACATTCAATAGTGGGAACTTTGGTCATCACAGCAACCT
GTACTCACGCCAACGCGAGTATTTTTTCTCCACTTGTTATCGATGCTGAC
AAAGCAGTAACGTCTTGGAACGCATGCTATACAGACGATCTAATGGTTGA
TGATATAGATAAGATGAAAATATATGTCAGTGAAACACCTAAAACTGACA
CCCTCAAAGTTCTTGAACCTGTTCCAGACAAGGAAGAGACTGCGGTAGAA
ACGGATAAAAAAATAACACGACAATTGAAATTGGTTATAGGCGCAACTTA
TGGTTCATGTTTTGTTGGTATGGTTCATATGTTGAGAAGCACATCGACAA
CTTCTAGCCAAGAAATGTTGGCAACAGCTGAATCATTAGAATCTCACTTT
AAAATTGCTGCTTGGTTTACTGACATGGAAGGAGGTTTTGGAATAAATTC
ATCCTTTTCCAAAAATCTGCAAGCTCTGCTGAGTCAGCAATCAATCTTAT
CCCATGTTAGTTTGGTATGCGAGGGCCTTATCCCAACAATAACAAGCGAG
AAGATCGCAATTGGTGTGAAAGCCTTTAGTGAATTCGATCCTGCATCCAC
CATGAAACAATTGGCAACTTTGCACAATGAAACCCAGAATGCGAATCAAA
CCGTAAGCAGTGCTGCTGATAATGCTCGTGAAGGAAAGAAAGTAACAGAG
CTGCGTGCAACTGACGTCAAAAGCACCATGGCTGCTCTTAGTGAGGTCGA
TGATGGAAAGAATAGCGTTTTGACTGTCAACACAATCATGACAGCTATGG
ATGAATACACAAAGGGAGCGAAAGAAGGACATATTGGTATTCCAATCAAT
TTCTTCTTGAAGAGTCTTACCAAAGCAGATATCGCAAAAATGTGGTTATC
CAAATATTTCCCTAAGAAAgagcaagagaagaaagaagACAAACAACCAG
GTAGTAGCCAAGGTAGCAGCAACCTCGGAAGTGGCATCCCTGGAAGTGGC
AACCCTGAAAGCAGCAACCAAGGTAGTGGCAATACTGGAAGTGGCAACTC
AGGTAGCAACAACCCTGCAAGCGGCAACTTAGGCAGCAGTACCTAACCCT
TAGcggcaaatcaaaacaaacataatGGAAGATAAATAATCGATTATATT
GATATATTGATGGTACGATGTGTAGAAATAATTTATTGAGGTAATACAAA
CAATTTATGATTCTTAATTGTTAAATAATTATAATAGTCGAGTAGTGCAA
TAGCACTTACTCTAACTACAGTGTGTTCCGTCTTAGATTAGCTAATCGGT
GAAAATTTCATTGCAAAAAAAGTCTtcgttttagagatatgaagcTTTAA
GCACACCAATTTCAAGATTAAAAAAAGTTGTGATAGAACCTTTTCAAAGC
AGAAAAGCCAACtaacttttgattgaaagcTCTCTtttatatgttatttt
gaagaaattttccattttcaatcaaatttatcGTTAATGAAAATTTGGTT
GGAtataattttttcaacaatggaaaaaaaaagaacttcTCTTTCTACTG
CATATGAAATCAACTTTCTTTGACATTTTTACCTTTCGTAAATTTAATGT
TAGTTACGAGTGAATTTGGAATAACAtacttcatcttcatcttcaatgtT
GAAAAGTTGCACACTTGATATCTCTGGGACTAAAAAACCTTCTAAATTAA
ATTCAAGCACAGAGAGCTGAGTAACTTTGCTTTATCAGCTCTACTAAAAA
TTAAAGCTATTGCGGTTaagtgattttttcacagaattaccttattatta
cattatattttttttgagGAACACACTGTATAGTACGGTTTTACAAACTT
GATAATGCTTAGCTGTAAGggatataaaaaaatttcattcttaATAAAAT
ATCTCTAATATGATTTTAGattgaacaaaagaaattaCAGTCTCATTCAG
AAGTAGATCTTAAAAAGAGATTGCGGAGAACCCAAATTCGACTTCATTTA
CTTATATCAATGTAAGGATAATTCAATTTGAAGTTGGCCCGTTTAATGGG
ACAAAAAGGTTAAACGAccccaaaaaaaataaagtttgaagATTCGATTT
TGTCAACAAATGGCAATTCATAATGTTTTCATGCTATTCAAAGCAATTTC
TTGGAGACTCAAGGATTGATTCACTATCGCTATCAATTCAATACATAAGG
TACTCAaaattaataatattttaagGAAGTAATTCTACGACTCTGACATA
AGGATTTCTGAGTACCGTGTGTATGTAACCGTCATTTTAGTTTATGTATT
AAtaaagttttcccgattttttcaatttcactttatactttacctttgct
ttatttgatttctaaagtttttgcaatttttctggaaaatggTGATTTTA
ATATATTTGTCATGAC Run BLAST on NCBI protein sequence of TCONS_00035045-protein >TCONS_00035045-protein ID=TCONS_00035045-protein|Name=TCONS_00035045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp
MYALKLKTALRNAVSITSKRWSSGAIPFDPTIILGNVVHPKKFVPLQNIA
VYQQQIDGEEDAMHDNLRAIRSLQMLAKELDYKEEDKNKESKLGKSMDKL
QGNIDLAAKNYAEKLQKNLPLINKEKAKIRLIDDHVESPLDFNKSLIKTD
LPISSNTIKLNAQYFSFAEEKQDSQATIMKMKSFVSGEVDSIFGSKISGK
VSNAVHQQTAQQHEEHSIVGTLVITATCTHANASIFSPLVIDADKAVTSW
NACYTDDLMVDDIDKMKIYVSETPKTDTLKVLEPVPDKEETAVETDKKIT
RQLKLVIGATYGSCFVGMVHMLRSTSTTSSQEMLATAESLESHFKIAAWF
TDMEGGFGINSSFSKNLQALLSQQSILSHVSLVCEGLIPTITSEKIAIGV
KAFSEFDPASTMKQLATLHNETQNANQTVSSAADNAREGKKVTELRATDV
KSTMAALSEVDDGKNSVLTVNTIMTAMDEYTKGAKEGHIGIPINFFLKSL
TKADIAKMWLSKYFPKKEQEKKEDKQPGSSQGSSNLGSGIPGSGNPESSN
QGSGNTGSGNSGSNNPASGNLGSST Run BLAST on NCBI transcript from alignment at sc0001243:18344..21560+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035045 ID=TCONS_00035045|Name=TCONS_00035045|organism=Clytia hemisphaerica|type=transcript|length=3217bp|location=Sequence derived from alignment at sc0001243:18344..21560+ (Clytia hemisphaerica)
gagctCAACTTGTTTGATGAGGTAGTATTTAATTTTTAGGTAATACTACG
ATTTGAGAAGTGCAAACGATGTACGCCTTGAAGTTGAAGACAGCGCTGAG
AAATGCAGTATCAATCACTTCAAAGAGATGGTCAAGTGGCGCCATACCCT
TTGATCCTACCATCATCCTTGGAAATGTTGTACATCCTAAGAAATTTGTA
CCATTACAAAACATTGCAGTCTACCAGCAACAGATTGATGGAGAAGAAGA
TGCTATGCACGATAACTTACGCGCAATAAGAAGCCTTCAGATGCTTGCTA
AAGAGCTTGACTATAAGGAAGAAGATAAAAACAAGGAGTCGAAGTTAGGC
AAGTCAATGGATAAGTTGCAAGGTAACATAGATTTGGCTGCTAAAAATTA
TGCagagaaattgcaaaaaaatcttCCCCTTATCAACAAGGAGAAGGCAA
AGATTAGATTGATTGATGATCATGTTGAAAGCCCTTTGGATTTCAACAAG
TCCCTGATCAAAACAGATTTACCAATCAGCTCAAACACCATCAAGTTGAA
TGCTCAATATTTTTCATTCGCCGAAGAAAAGCAAGATAGCCAAGCGACTa
ttatgaaaatgaaatcttTTGTTTCTGGAGAAGTTGATAGTATTTTTGGC
AGCAAAATCAGTGGAAAAGTCTCAAATGCAGTCCATCAACAGACAGCTCA
ACAACACGAGGAACATTCAATCGTGGGAACTTTGGTCATNGTATTTTTGA
CAGCAAAATCAGTGGAAAAGTCTCAAATGCAGTCCAACAGCAGACAGCTC
AACAACGCGAGGAACATTCAATAGTGGGAACTTTGGTCATCACAGCAACC
TGTACTCACGCCAACGCGAGTATTTTTTCTCCACTTGTTATCGATGCTGA
CAAAGCAGTAACGTCTTGGAACGCATGCTATACAGACGATCTAATGGTTG
ATGATATAGATAAGATGAAAATATATGTCAGTGAAACACCTAAAACTGAC
ACCCTCAAAGTTCTTGAACCTGTTCCAGACAAGGAAGAGACTGCGGTAGA
AACGGATAAAAAAATAACACGACAATTGAAATTGGTTATAGGCGCAACTT
ATGGTTCATGTTTTGTTGGTATGGTTCATATGTTGAGAAGCACATCGACA
ACTTCTAGCCAAGAAATGTTGGCAACAGCTGAATCATTAGAATCTCACTT
TAAAATTGCTGCTTGGTTTACTGACATGGAAGGAGGTTTTGGAATAAATT
CATCCTTTTCCAAAAATCTGCAAGCTCTGCTGAGTCAGCAATCAATCTTA
TCCCATGTTAGTTTGGTATGCGAGGGCCTTATCCCAACAATAACAAGCGA
GAAGATCGCAATTGGTGTGAAAGCCTTTAGTGAATTCGATCCTGCATCCA
CCATGAAACAATTGGCAACTTTGCACAATGAAACCCAGAATGCGAATCAA
ACCGTAAGCAGTGCTGCTGATAATGCTCGTGAAGGAAAGAAAGTAACAGA
GCTGCGTGCAACTGACGTCAAAAGCACCATGGCTGCTCTTAGTGAGGTCG
ATGATGGAAAGAATAGCGTTTTGACTGTCAACACAATCATGACAGCTATG
GATGAATACACAAAGGGAGCGAAAGAAGGACATATTGGTATTCCAATCAA
TTTCTTCTTGAAGAGTCTTACCAAAGCAGATATCGCAAAAATGTGGTTAT
CCAAATATTTCCCTAAGAAAgagcaagagaagaaagaagACAAACAACCA
GGTAGTAGCCAAGGTAGCAGCAACCTCGGAAGTGGCATCCCTGGAAGTGG
CAACCCTGAAAGCAGCAACCAAGGTAGTGGCAATACTGGAAGTGGCAACT
CAGGTAGCAACAACCCTGCAAGCGGCAACTTAGGCAGCAGTACCTAACCC
TTAGcggcaaatcaaaacaaacataatGGAAGATAAATAATCGATTATAT
TGATATATTGATGGTACGATGTGTAGAAATAATTTATTGAGGTAATACAA
ACAATTTATGATTCTTAATTGTTAAATAATTATAATAGTCGAGTAGTGCA
ATAGCACTTACTCTAACTACAGTGTGTTCCGTCTTAGATTAGCTAATCGG
TGAAAATTTCATTGCAAAAAAAGTCTtcgttttagagatatgaagcTTTA
AGCACACCAATTTCAAGATTAAAAAAAGTTGTGATAGAACCTTTTCAAAG
CAGAAAAGCCAACtaacttttgattgaaagcTCTCTtttatatgttattt
tgaagaaattttccattttcaatcaaatttatcGTTAATGAAAATTTGGT
TGGAtataattttttcaacaatggaaaaaaaaagaacttcTCTTTCTACT
GCATATGAAATCAACTTTCTTTGACATTTTTACCTTTCGTAAATTTAATG
TTAGTTACGAGTGAATTTGGAATAACAtacttcatcttcatcttcaatgt
TGAAAAGTTGCACACTTGATATCTCTGGGACTAAAAAACCTTCTAAATTA
AATTCAAGCACAGAGAGCTGAGTAACTTTGCTTTATCAGCTCTACTAAAA
ATTAAAGCTATTGCGGTTaagtgattttttcacagaattaccttattatt
acattatattttttttgagGAACACACTGTATAGTACGGTTTTACAAACT
TGATAATGCTTAGCTGTAAGggatataaaaaaatttcattcttaATAAAA
TATCTCTAATATGATTTTAGattgaacaaaagaaattaCAGTCTCATTCA
GAAGTAGATCTTAAAAAGAGATTGCGGAGAACCCAAATTCGACTTCATTT
ACTTATATCAATGTAAGGATAATTCAATTTGAAGTTGGCCCGTTTAATGG
GACAAAAAGGTTAAACGAccccaaaaaaaataaagtttgaagATTCGATT
TTGTCAACAAATGGCAATTCATAATGTTTTCATGCTATTCAAAGCAATTT
CTTGGAGACTCAAGGATTGATTCACTATCGCTATCAATTCAATACATAAG
GTACTCAaaattaataatattttaagGAAGTAATTCTACGACTCTGACAT
AAGGATTTCTGAGTACCGTGTGTATGTAACCGTCATTTTAGTTTATGTAT
TAAtaaagttttcccgattttttcaatttcactttatactttacctttgc
tttatttgatttctaaagtttttgcaatttttctggaaaatggTGATTTT
AATATATTTGTCATGAC Coding sequence (CDS) from alignment at sc0001243:18344..21560+ >TCONS_00035045 ID=TCONS_00035045|Name=TCONS_00035045|organism=Clytia hemisphaerica|type=CDS|length=3456bp|location=Sequence derived from alignment at sc0001243:18344..21560+ (Clytia hemisphaerica)
ATGTACGCCTTGAAGTTGAAGACAGCGCTGAGAAATGCAGTATCAATCAC
TTCAAAGAGATGGTCAAGTGGCGCCATACCCTTTGATCCTACCATCATCC
TTGGAAATGTTGTACATCCTAAGAAATTTGTACCATTACAAAACATTGCA
GTCTACCAGCAACAGATTGATGGAGAAGAAGATGCTATGCACGATAACTT
ACGCGCAATAAGAAGCCTTCAGATGCTTGCTAAAGAGCTTGACTATAAGG
AAGAAGATAAAAACAAGGAGTCGAAGTTAGGCAAGTCAATGGATAAGTTG
CAAGGTAACATAGATTTGGCTGCTAAAAATTATGCagagaaattgcaaaa
aaatcttCCCCTTATCAACAAGGAGAAGGCAAAGATTAGATTGATTGATG
ATCATGTTGAAAGCCCTTTGGATTTCAACAAGTCCCTGATCAAAACAGAT
TTACCAATCAGCTCAAACACCATCAAGTTGAATGCTCAATATTTTTCATT
CGCCGAAGAAAAGCAAGATAGCCAAGCGACTattatgaaaatgaaatctt
TTGTTTCTGGAGAAGTTGATAGTATTTTTGGCAGCAAAATCAGTGGAAAA
GTCTCAAATGCAGTCCATCAACAGACAGCTCAACAACACGAGGAACATTC
AATAGTGGGAACTTTGGTCATCACAGCAACCTGTACTCACGCCAACGCGA
GTATTTTTTCTCCACTTGTTATCGATGCTGACAAAGCAGTAACGTCTTGG
AACGCATGCTATACAGACGATCTAATGGTTGATGATATAGATAAGATGAA
AATATATGTCAGTGAAACACCTAAAACTGACACCCTCAAAGTTCTTGAAC
CTGTTCCAGACAAGGAAGAGACTGCGGTAGAAACGGATAAAAAAATAACA
CGACAATTGAAATTGGTTATAGGCGCAACTTATGGTTCATGTTTTGTTGG
TATGGTTCATATGTTGAGAAGCACATCGACAACTTCTAGCCAAGAAATGT
TGGCAACAGCTGAATCATTAGAATCTCACTTTAAAATTGCTGCTTGGTTT
ACTGACATGGAAGGAGGTTTTGGAATAAATTCATCCTTTTCCAAAAATCT
GCAAGCTCTGCTGAGTCAGCAATCAATCTTATCCCATGTTAGTTTGGTAT
GCGAGGGCCTTATCCCAACAATAACAAGCGAGAAGATCGCAATTGGTGTG
AAAGCCTTTAGTGAATTCGATCCTGCATCCACCATGAAACAATTGGCAAC
TTTGCACAATGAAACCCAGAATGCGAATCAAACCGTAAGCAGTGCTGCTG
ATAATGCTCGTGAAGGAAAGAAAGTAACAGAGCTGCGTGCAACTGACGTC
AAAAGCACCATGGCTGCTCTTAGTGAGGTCGATGATGGAAAGAATAGCGT
TTTGACTGTCAACACAATCATGACAGCTATGGATGAATACACAAAGGGAG
CGAAAGAAGGACATATTGGTATTCCAATCAATTTCTTCTTGAAGAGTCTT
ACCAAAGCAGATATCGCAAAAATGTGGTTATCCAAATATTTCCCTAAGAA
AgagcaagagaagaaagaagACAAACAACCAGGTAGTAGCCAAGGTAGCA
GCAACCTCGGAAGTGGCATCCCTGGAAGTGGCAACCCTGAAAGCAGCAAC
CAAGGTAGTGGCAATACTGGAAGTGGCAACTCAGGTAGCAACAACCCTGC
AAGCGGCAACTTAGGCAGCAGTACCTAAATGTACGCCTTGAAGTTGAAGA
CAGCGCTGAGAAATGCAGTATCAATCACTTCAAAGAGATGGTCAAGTGGC
GCCATACCCTTTGATCCTACCATCATCCTTGGAAATGTTGTACATCCTAA
GAAATTTGTACCATTACAAAACATTGCAGTCTACCAGCAACAGATTGATG
GAGAAGAAGATGCTATGCACGATAACTTACGCGCAATAAGAAGCCTTCAG
ATGCTTGCTAAAGAGCTTGACTATAAGGAAGAAGATAAAAACAAGGAGTC
GAAGTTAGGCAAGTCAATGGATAAGTTGCAAGGTAACATAGATTTGGCTG
CTAAAAATTATGCagagaaattgcaaaaaaatcttCCCCTTATCAACAAG
GAGAAGGCAAAGATTAGATTGATTGATGATCATGTTGAAAGCCCTTTGGA
TTTCAACAAGTCCCTGATCAAAACAGATTTACCAATCAGCTCAAACACCA
TCAAGTTGAATGCTCAATATTTTTCATTCGCCGAAGAAAAGCAAGATAGC
CAAGCGACTattatgaaaatgaaatcttTTGTTTCTGGAGAAGTTGATAG
TATTTTTGGCAGCAAAATCAGTGGAAAAGTCTCAAATGCAGTCCATCAAC
AGACAGCTCAACAACACGAGGAACATTCAATAGTGGGAACTTTGGTCATC
ACAGCAACCTGTACTCACGCCAACGCGAGTATTTTTTCTCCACTTGTTAT
CGATGCTGACAAAGCAGTAACGTCTTGGAACGCATGCTATACAGACGATC
TAATGGTTGATGATATAGATAAGATGAAAATATATGTCAGTGAAACACCT
AAAACTGACACCCTCAAAGTTCTTGAACCTGTTCCAGACAAGGAAGAGAC
TGCGGTAGAAACGGATAAAAAAATAACACGACAATTGAAATTGGTTATAG
GCGCAACTTATGGTTCATGTTTTGTTGGTATGGTTCATATGTTGAGAAGC
ACATCGACAACTTCTAGCCAAGAAATGTTGGCAACAGCTGAATCATTAGA
ATCTCACTTTAAAATTGCTGCTTGGTTTACTGACATGGAAGGAGGTTTTG
GAATAAATTCATCCTTTTCCAAAAATCTGCAAGCTCTGCTGAGTCAGCAA
TCAATCTTATCCCATGTTAGTTTGGTATGCGAGGGCCTTATCCCAACAAT
AACAAGCGAGAAGATCGCAATTGGTGTGAAAGCCTTTAGTGAATTCGATC
CTGCATCCACCATGAAACAATTGGCAACTTTGCACAATGAAACCCAGAAT
GCGAATCAAACCGTAAGCAGTGCTGCTGATAATGCTCGTGAAGGAAAGAA
AGTAACAGAGCTGCGTGCAACTGACGTCAAAAGCACCATGGCTGCTCTTA
GTGAGGTCGATGATGGAAAGAATAGCGTTTTGACTGTCAACACAATCATG
ACAGCTATGGATGAATACACAAAGGGAGCGAAAGAAGGACATATTGGTAT
TCCAATCAATTTCTTCTTGAAGAGTCTTACCAAAGCAGATATCGCAAAAA
TGTGGTTATCCAAATATTTCCCTAAGAAAgagcaagagaagaaagaagAC
AAACAACCAGGTAGTAGCCAAGGTAGCAGCAACCTCGGAAGTGGCATCCC
TGGAAGTGGCAACCCTGAAAGCAGCAACCAAGGTAGTGGCAATACTGGAA
GTGGCAACTCAGGTAGCAACAACCCTGCAAGCGGCAACTTAGGCAGCAGT
ACCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035045-exon-sc0001243-1491911889:18344..19057 | TCONS_00035045-exon-sc0001243-1491911889:18344..19057 | Clytia hemisphaerica | exon |
| TCONS_00035045-exon-sc0001243-1510915933:18344..19057 | TCONS_00035045-exon-sc0001243-1510915933:18344..19057 | Clytia hemisphaerica | exon |
| TCONS_00035045-exon-sc0001243-1575043694:18344..19057 | TCONS_00035045-exon-sc0001243-1575043694:18344..19057 | Clytia hemisphaerica | exon |
| TCONS_00035045-exon-sc0001243-1491911889:19159..21560 | TCONS_00035045-exon-sc0001243-1491911889:19159..21560 | Clytia hemisphaerica | exon |
| TCONS_00035045-exon-sc0001243-1510915933:19159..21560 | TCONS_00035045-exon-sc0001243-1510915933:19159..21560 | Clytia hemisphaerica | exon |
| TCONS_00035045-exon-sc0001243-1575043694:19159..21560 | TCONS_00035045-exon-sc0001243-1575043694:19159..21560 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001243 | supercontig | sc0001243:18344..21560 + |
Blast
The following BLAST results are available for this feature:
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