TCONS_00035039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035039
Unique NameTCONS_00035039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035039 ID=TCONS_00035039|Name=TCONS_00035039|organism=Clytia hemisphaerica|type=transcript|length=764bp
GAGCGATTAATATCGTTTAGCTATCGATTGCACGGGGTGTGCGAGCGCAA
ATACAAGGATTTCCGTGACTGTTTGTGTATGGAAATTGCTGACTTCCTAT
ACCCTCTTGTGTTTGGCGCAATCAAATCAGAATACTTTGATTGCTCAGGC
CTCCCTACAGGCCAGAACCCCCTTGCCATCCTCTGTGAATGGATCCATCA
TCAGAAAGTAAATGTGTGTGTAAATGTCCTCCTCGAAAGACTAAATTTAA
ATACCATATACCTGCTGTGAAGACAGAAAGAGTGAGGATCCACCATGATA
CATACCGCTGACAGACTAAGCACTGAACTGTTGGGTGGGTGGCATCAGTA
CTCAGTAAGGCAGGGGTCATGAACTAGGGGTTGCTGTCTAATAGTGAATG
GTAAGGTCCAAGGCAAGGTAAAATCTTCCAATCaagatgaataaaaaaat
ttcggaCTGACATGTACACATGGAAGCCAAATAGCTCAGCCAATCAGAAC
CTGTCAAAGCACGCTATTCCTTGCTTCCCTTACCTAATAGCAGATCATAA
CAAAAATTGCGCAGTGTACCCAAGACACAGAAAAAAGTCTCGTTTCAGGT
AAGTCTTCGCGAGCTAGTGCATTCCTCCGAGTGATAGGATCATGGCATAC
CAAACGAAAGATCTTTTTACGCTCTTTTCGGGCGTCTAagtcaataccgc
cttttttccgcgggatttcctaatatgacgtaattaaagatggtaaccaa
aaatgtaatatttt
Run BLAST on NCBI

transcript from alignment at sc0001242:34799..35562

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035039 ID=TCONS_00035039|Name=TCONS_00035039|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at sc0001242:34799..35562 (Clytia hemisphaerica)
aaaatattacatttttggttaccatctttaattacgtcatattaggaaat
cccgcggaaaaaaggcggtattgactTAGACGCCCGAAAAGAGCGTAAAA
AGATCTTTCGTTTGGTATGCCATGATCCTATCACTCGGAGGAATGCACTA
GCTCGCGAAGACTTACCTGAAACGAGACTTTTTTCTGTGTCTTGGGTACA
CTGCGCAATTTTTGTTATGATCTGCTATTAGGTAAGGGAAGCAAGGAATA
GCGTGCTTTGACAGGTTCTGATTGGCTGAGCTATTTGGCTTCCATGTGTA
CATGTCAGtccgaaatttttttattcatcttGATTGGAAGATTTTACCTT
GCCTTGGACCTTACCATTCACTATTAGACAGCAACCCCTAGTTCATGACC
CCTGCCTTACTGAGTACTGATGCCACCCACCCAACAGTTCAGTGCTTAGT
CTGTCAGCGGTATGTATCATGGTGGATCCTCACTCTTTCTGTCTTCACAG
CAGGTATATGGTATTTAAATTTAGTCTTTCGAGGAGGACATTTACACACA
CATTTACTTTCTGATGATGGATCCATTCACAGAGGATGGCAAGGGGGTTC
TGGCCTGTAGGGAGGCCTGAGCAATCAAAGTATTCTGATTTGATTGCGCC
AAACACAAGAGGGTATAGGAAGTCAGCAATTTCCATACACAAACAGTCAC
GGAAATCCTTGTATTTGCGCTCGCACACCCCGTGCAATCGATAGCTAAAC
GATATTAATCGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020391XLOC_020391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035039-exon-sc0001242-1491911889:34799..35562TCONS_00035039-exon-sc0001242-1491911889:34799..35562Clytia hemisphaericaexon
TCONS_00035039-exon-sc0001242-1510915933:34799..35562TCONS_00035039-exon-sc0001242-1510915933:34799..35562Clytia hemisphaericaexon
TCONS_00035039-exon-sc0001242-1575043694:34799..35562TCONS_00035039-exon-sc0001242-1575043694:34799..35562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001242supercontigsc0001242:34799..35562 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0639239	0	0.0723779	0.354052	0	0	0.0821842	0	0	0.133447	0.388581	0.212865	0.170968	0.132453	0.147146	0.272674	0.19195	0.0983711	0	0.0711074	0.432637	0.180879	0.0732938	0.133269	0.0686322	0.0636054	0.175305	0.18709	0.283802	0.144575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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