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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035029 ID=TCONS_00035029|Name=TCONS_00035029|organism=Clytia hemisphaerica|type=transcript|length=1485bp
GCTACACCTAAAATTTGCCATATAAGAGGTGGGAGCTGGTTGTTTTTCCC
GTCAGGCGGGGGGAGCTCTATCTTGGGGGGGACCTGCATTAGTTTATGTA
ACTCTGGGGGCTAAATAACACttcataaatatttttctttactgttggtt
tttaatttctccaaacctttatgttttcatgcaaagtgtgatctgatcct
taaaatgcaaaaatgaagacattcttttgcattctctaaaagtgcacaca
catgtaaatagagctttgtgaatgccataaaatttttctcacactgggac
ctaaaattttatcaggctggggggaccttgttctcagggggggcctaaat
ttggcgggggggagggctagaaccccagtcggagccatgtCAGTTCTAGG
GCCATTGTTATTCTTGGTCTACATCAATGATATGCCCCTTCAAGTTGAAT
CCTCCATTGCCCTTTTTGCAGATAATGTATACCTATATAAAGTAATTGAT
TGCCTAAATGATGTACATTCACTGCAATCTGATCTTGACTGACTTGTCTT
GTGGGAGAAGAAATGGTCCATGGAGTTTCATCCGGATAAATGCTATGTGT
TGAGAGTAACGAACAAACGTAAAATTATTGATCATAAGTATAAGATTCAT
GATCAAGAACTGAAAATAGTTGACAAAGCTAAATATTTGGGTTCACCATC
TCAAAAAACTTATCCTGGAAACCTCATGTTGCTATTATCACATCAAAAGC
AAACTCCACTCGTATTTTTCTACAGAGAAACTTGTCAATGACTGATTCTG
AAACACGATTAGCATGCTATAAAACATACATACGTCCTCTTGTTGAATAT
GCATCTTCTGTATGGGACCCTCCAGGAATTGAAACATTGACGTCTAAAGT
TGAGGCTGTACAAAGAAAGTCACTCCATTGGATTTACAACAAATGGGATA
GGAAATCATCCCCAATATCTCTTCTTAGAGATGCCCAATTGGACACACTT
GAGAAACGTTGCAAAATGATTAGATTGAAATTCTTTCACGATGTTCTCCA
CAATCTAAAACATGTGGACAAATCAATTCTCCCTAATAGGCAGCGTTGTA
AGCAcatcaaatttcaacaaaaactgGGTTCAATTCAATCGTATACAACG
TCTTTTTTCCCTCAGACTGTCAAGCTTCAAGCTCTGGAACAATCTTCCCT
GTGAAGTCACATCTATTGAAGATCGTaatttattttttggtaaaattagc
aCCTTGGATTTCAAACAGACATTAAGATTTACCCTATTGCATTGTGCTAG
TTAAACTAATCTCTCTTATCTACTCTCAGCAATTCAATACTTAATCTTAA
GTTCCATAAACGCTGACATAAATCATAATCTCttcgatttttattttctt
ctcaaCCACTTTTCATCCTTCTATTTCattattagaaaataaattgtttt
aaaaacatGAACATTATATTAACATTATTTAAACC Run BLAST on NCBI protein sequence of TCONS_00035029-protein >TCONS_00035029-protein ID=TCONS_00035029-protein|Name=TCONS_00035029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MTDSETRLACYKTYIRPLVEYASSVWDPPGIETLTSKVEAVQRKSLHWIY
NKWDRKSSPISLLRDAQLDTLEKRCKMIRLKFFHDVLHNLKHVDKSILPN
RQRCKHIKFQQKLGSIQSYTTSFFPQTVKLQALEQSSL Run BLAST on NCBI transcript from alignment at sc0001240:33493..34977 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035029 ID=TCONS_00035029|Name=TCONS_00035029|organism=Clytia hemisphaerica|type=transcript|length=1485bp|location=Sequence derived from alignment at sc0001240:33493..34977 (Clytia hemisphaerica)
GGTTTAAATAATGTTAATATAATGTTCatgtttttaaaacaatttatttt
ctaataatGAAATAGAAGGATGAAAAGTGGttgagaagaaaataaaaatc
gaaGAGATTATGATTTATGTCAGCGTTTATGGAACTTAAGATTAAGTATT
GAATTGCTGAGAGTAGATAAGAGAGATTAGTTTAACTAGCACAATGCAAT
AGGGTAAATCTTAATGTCTGTTTGAAATCCAAGGtgctaattttaccaaa
aaataaattACGATCTTCAATAGATGTGACTTCACAGGGAAGATTGTTCC
AGAGCTTGAAGCTTGACAGTCTGAGGGAAAAAAGACGTTGTATACGATTG
AATTGAACCcagtttttgttgaaatttgatgTGCTTACAACGCTGCCTAT
TAGGGAGAATTGATTTGTCCACATGTTTTAGATTGTGGAGAACATCGTGA
AAGAATTTCAATCTAATCATTTTGCAACGTTTCTCAAGTGTGTCCAATTG
GGCATCTCTAAGAAGAGATATTGGGGATGATTTCCTATCCCATTTGTTGT
AAATCCAATGGAGTGACTTTCTTTGTACAGCCTCAACTTTAGACGTCAAT
GTTTCAATTCCTGGAGGGTCCCATACAGAAGATGCATATTCAACAAGAGG
ACGTATGTATGTTTTATAGCATGCTAATCGTGTTTCAGAATCAGTCATTG
ACAAGTTTCTCTGTAGAAAAATACGAGTGGAGTTTGCTTTTGATGTGATA
ATAGCAACATGAGGTTTCCAGGATAAGTTTTTTGAGATGGTGAACCCAAA
TATTTAGCTTTGTCAACTATTTTCAGTTCTTGATCATGAATCTTATACTT
ATGATCAATAATTTTACGTTTGTTCGTTACTCTCAACACATAGCATTTAT
CCGGATGAAACTCCATGGACCATTTCTTCTCCCACAAGACAAGTCAGTCA
AGATCAGATTGCAGTGAATGTACATCATTTAGGCAATCAATTACTTTATA
TAGGTATACATTATCTGCAAAAAGGGCAATGGAGGATTCAACTTGAAGGG
GCATATCATTGATGTAGACCAAGAATAACAATGGCCCTAGAACTGacatg
gctccgactggggttctagccctcccccccgccaaatttaggccccccct
gagaacaaggtccccccagcctgataaaattttaggtcccagtgtgagaa
aaattttatggcattcacaaagctctatttacatgtgtgtgcacttttag
agaatgcaaaagaatgtcttcatttttgcattttaaggatcagatcacac
tttgcatgaaaacataaaggtttggagaaattaaaaaccaacagtaaaga
aaaatatttatgaaGTGTTATTTAGCCCCCAGAGTTACATAAACTAATGC
AGGTCCCCCCCAAGATAGAGCTCCCCCCGCCTGACGGGAAAAACAACCAG
CTCCCACCTCTTATATGGCAAATTTTAGGTGTAGC Coding sequence (CDS) from alignment at sc0001240:33493..34977 >TCONS_00035029 ID=TCONS_00035029|Name=TCONS_00035029|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0001240:33493..34977 (Clytia hemisphaerica)
TCACAGGGAAGATTGTTCCAGAGCTTGAAGCTTGACAGTCTGAGGGAAAA
AAGACGTTGTATACGATTGAATTGAACCcagtttttgttgaaatttgatg
TGCTTACAACGCTGCCTATTAGGGAGAATTGATTTGTCCACATGTTTTAG
ATTGTGGAGAACATCGTGAAAGAATTTCAATCTAATCATTTTGCAACGTT
TCTCAAGTGTGTCCAATTGGGCATCTCTAAGAAGAGATATTGGGGATGAT
TTCCTATCCCATTTGTTGTAAATCCAATGGAGTGACTTTCTTTGTACAGC
CTCAACTTTAGACGTCAATGTTTCAATTCCTGGAGGGTCCCATACAGAAG
ATGCATATTCAACAAGAGGACGTATGTATGTTTTATAGCATGCTAATCGT
GTTTCAGAATCAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035029-exon-sc0001240-1491911889:33493..34977 | TCONS_00035029-exon-sc0001240-1491911889:33493..34977 | Clytia hemisphaerica | exon |
| TCONS_00035029-exon-sc0001240-1510915933:33493..34977 | TCONS_00035029-exon-sc0001240-1510915933:33493..34977 | Clytia hemisphaerica | exon |
| TCONS_00035029-exon-sc0001240-1575043694:33493..34977 | TCONS_00035029-exon-sc0001240-1575043694:33493..34977 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001240 | supercontig | sc0001240:33493..34977 . |
Blast
The following BLAST results are available for this feature:
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