|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035000 ID=TCONS_00035000|Name=TCONS_00035000|organism=Clytia hemisphaerica|type=transcript|length=831bp
TATATCTATGAAATGTTAACTAAATTGCTGCCAACGATTGAGATATATCT
ATGAAACTTTACCACAAAAATGATGACAGAATGTATGATTAAAAGTAAAT
AGAAATTAtgttctcatcttcaattttttcacttcAGCTGAGTTAGAAAT
CTGAGAATTTCTGCATACCTGTCAGAAATACTTTGGGGAGCCTGAAgctt
tcaaaaatggtcggattttcCGAGTTGAACCCGGTGCTCTGTGATCGTTC
GACtattagtcaaaaaaatgacaatgaaCAAGTGTGTTAAGTCAGAATTT
ATTAGTATTTTACTGCTTAAACAATTTATTCATAAACCGTTTTTATATGG
ACTATGATTCATTGCTTTTAAGAGTTCCTTACTTCGGACAGTATCGTTGT
GGTTTCCTCCGAACGTTGAGGTTTGTCTTCTAAAGACGTCTTCTAGTATA
AGTATCGCTTTTCGGTAATCATTTTGATTGTAATAACAAAGAGCCAACCA
GTGTCTGGTATCCAGAGTATCCACGTGGTTTTCACCTAAAGTGAAAGTTT
GTTTCTTAATAATATCTTCATAAAGAGGAATAGCTTCGGCCCACTTCCCA
TTTCTCCGTAGATTATATGCTTTTCTCTTTATTTCATCTATATCTTTGCT
TTCATCCGGTATTGTTTCTTGATTTTCAACAGTGTTCTTCGCCAAAGGGT
TGTCTTTCTTTCGAATATCTAAAACTATAAGCGTAATATTTgttactagc
cggtacccggcgtcgcacgccggttaagctgtagctgaacgcactaaaag
tcctttggatgttgaagctggctttaAAAAG Run BLAST on NCBI transcript from alignment at sc0001239:33685..35271+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035000 ID=TCONS_00035000|Name=TCONS_00035000|organism=Clytia hemisphaerica|type=transcript|length=1587bp|location=Sequence derived from alignment at sc0001239:33685..35271+ (Clytia hemisphaerica)
TATATCTATGAAATGTTAACTAAATTGCTGCCAACGATTGAGATATATCT
ATGAAACTTTACCACAAAAATGATGACAGAATGTATGATTAAAAGTAAAT
AGAAATTAtgttctcatcttcaattttttcacttcAGCTGAGTTAGAAAT
CTGAGAATTTCTGCATACCTGTCAGAAATACTTTGGGGAGCCTGAAgctt
tcaaaaatggtcggattttcCGAGTTGAACCCGGTGCTCTGTGATCGTTC
GACtattagtcaaaaaaatgacaatgaaCAAGTGTGTTAAGTCAGAATTT
ATTAGTATTTTACTGCTTAAACAATTTATTCATAAACCGTTTTTATATGG
ACTATGATTCATTGCTTTTAAGAGTTCCTTACTTCGGACAGTATCGTTGT
GGTTTCCTCCGAACGTTGAGGTTTGTCTTCTAAAGACGTCTTCTAGTATA
AGTATCGCTTCTTGGTAATCATTTTGTTCATAATAACAACTAGCCAACCA
GTATCTGGTATTCAGAGTATCCTCGTGGTTTTCACCCAAAGTGCAAGTTC
GTTTCTCACCTACGTCCTGGAAAATTGGTATGGCTTTTCGGTAATCATTT
TGATCATAATAACAATGAGCCAACCAGTATCTGGTATTCAGAGTATGCTC
GTGGTTTTCACCCAAAGTGAAAGTTTGTTTCTCGGCTGCATCCTGGAAAA
TTGGTGTGGCTTTTCGGTAATCATTTTGATCGTAATAACAAAGAGCCAAC
ATGTGTCTGGTATCCAGAGTATTCTGGTGGTTCTCACCTAAAGTGGAAGT
TTGTTTCTCACCTACATCCTGGAAAATTGGTGTGGCTTTTTGGTAatctt
tttgattgaaataacAAGCAGCCAACCAGTATCTGGTAGTCAGAGTATTC
ACGTGGTTTTCACCTAAAGTGAAAGTTCGTTTCTCACCTACATCCTGGAA
AATTGGTATGGCTTTTCGATAATCATTTTGATCGTAATAACAATGAGCCA
ACCAGTATCTGGTATTCAGAGTATGCTCAGGGTTTTCACCCAAAGCGAAA
GTTTCTTTCTCACCTACATCCTGGAAAATTGGTAAGGCTTTTCGGTAATC
ATTTTGATTGTAATAACAAAGAGCCAACATGTGTCTGGTATTCAGAGTAT
TCTGGTGGTTCTCACCTAAAGTGGAAGTTAGTTTCTCACCTACATCCTGG
AAAATTGGTGTGGCTTTTTGGTAatctttttgattgaaataacAAGCAGC
CAACCAGTGTCTGGTATCCAGAGTATCCACGTGGTTTTCACCTAAAGTGA
AAGTTTGTTTCTTAATAATATCTTCATAAAGAGGAATAGCTTCGGCCCAC
TTCCCATTTCTCCGTAGATTATATGCTTTTCTCTTTATTTCATCTATATC
TTTGCTTTCATCCGGTATTGTTTCTTGATTTTCAACAGTGTTCTTCGCCA
AAGGGTTGTCTTTCTTTCGAATATCTAAAACTATAAGCGTAATATTTgtt
actagccggtacccggcgtcgcacgccggttaagctgtagctgaacgcac
taaaagtcctttggatgttgaagctggctttaAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035000-exon-sc0001239-1491911889:33685..34140 | TCONS_00035000-exon-sc0001239-1491911889:33685..34140 | Clytia hemisphaerica | exon |
| TCONS_00035000-exon-sc0001239-1510915933:33685..34140 | TCONS_00035000-exon-sc0001239-1510915933:33685..34140 | Clytia hemisphaerica | exon |
| TCONS_00035000-exon-sc0001239-1575043694:33685..34140 | TCONS_00035000-exon-sc0001239-1575043694:33685..34140 | Clytia hemisphaerica | exon |
| TCONS_00035000-exon-sc0001239-1491911889:34771..34812 | TCONS_00035000-exon-sc0001239-1491911889:34771..34812 | Clytia hemisphaerica | exon |
| TCONS_00035000-exon-sc0001239-1510915933:34771..34812 | TCONS_00035000-exon-sc0001239-1510915933:34771..34812 | Clytia hemisphaerica | exon |
| TCONS_00035000-exon-sc0001239-1575043694:34771..34812 | TCONS_00035000-exon-sc0001239-1575043694:34771..34812 | Clytia hemisphaerica | exon |
| TCONS_00035000-exon-sc0001239-1491911889:34939..35271 | TCONS_00035000-exon-sc0001239-1491911889:34939..35271 | Clytia hemisphaerica | exon |
| TCONS_00035000-exon-sc0001239-1510915933:34939..35271 | TCONS_00035000-exon-sc0001239-1510915933:34939..35271 | Clytia hemisphaerica | exon |
| TCONS_00035000-exon-sc0001239-1575043694:34939..35271 | TCONS_00035000-exon-sc0001239-1575043694:34939..35271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001239 | supercontig | sc0001239:33685..35271 + |
Blast
The following BLAST results are available for this feature:
|
