TCONS_00034984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034984
Unique NameTCONS_00034984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034984 ID=TCONS_00034984|Name=TCONS_00034984|organism=Clytia hemisphaerica|type=transcript|length=1755bp
caaaaatacaaaaaaatctgtGTATCACATTTTCAGGATCCTTGAGGCGA
TACCAGGATGTCAGTAAAAGCTATGCAAAGTTAATTAATTTCAGAAATTG
TtatatttcatgaaaattcAATTATAAAAGCTCATCAATggtgcaaaaaa
taagaaaaattatgCTGGGTTACTATCTGTATGCAGTANCAATggtgcaa
aaaataagaaaaattatgCTGGGTTACTATCTGAATGCAGTGATTCTTGA
CTCTTATTGGTTGTTAAAACAATAGAAGCTGACGAGACAATGTTTTTCGC
CCCATTCTCcttgcttttttgtttacaatcaaTCGTTAGCAATGAACTTT
CTGCCGTGACCGAAACTGAGGAGGAAGAAGAATAAAGTGCCGGATCCGAA
CCAATTGGAGTTCGCGGTAAAGTTGATAACTCTGTTTCAATTGTAGGACT
GGGTTCGAGTCTTTTCATTTGATGTAAATTTGTAGTTGATGATGTATTTG
AGCCCTCTTTTCCTTGTTCCCAACCTCCTCCACGTTtacaaaaatcgtaa
aaatcgAAAGGAGCTCGTAATATTGAGATTGTTAGCTCGTAAATCCCATC
TCCGAATCGCGTACTCATCGTACATATGATGAGTGGATTAATTGCGTTAT
ACATGTATCCGGACCAATATGCGGACACGCCCAAACCATGTGGGATACTA
TCAATCGATTTCGATGTTACTGCCATGGCAACATAAACAGCGAAGGGAGT
CCAACATAATAGAAAACATGCTAAACTACAAAACGCAGTTAACACTAAAC
GTTGTTGGAGCTTCATAACATCGCACGTACTAGTGACCGATGTTTTGCTT
ATCCGCTTAGTATGAATACGGACAGCCCGGAATACTTTGAAATAGACATG
CGCGTTCACAATGTTCGGTATAATAAATCCAAGCGCGAATAAAAACAACA
TGTAAATTGAATCGATTTTGTTCTTCGGGAAACCGACCCCGCATACAAGG
GCCGTTCTGTTGTAACGGTATTCGCCAATATGGATCAACGGCCCGAGAGA
CATAAAAATTGCTATAGTCCATAAGATGAAGCTACTCGTCCACGTGCGCC
TCACGGTCATTGCTCTACTAAACGGTTTCACGACAGCGAAATATTTATCT
ATACTGATCATAGTATGTATAAAGATTGTATACAGTAATAATTGTGACGC
TAAAAATGCGTTGAATTTACATATAGGGCCTTCAGCGAAAGGCCAGTATT
TCAACACCATTGATGTTAAACTAAACGGCATTATTAAAAGAGTTGTAAGG
AATGCAGCAACGGCTAAATTGCCGATTAATATGTTTGTACTATTCCACAT
ACGATCGTTTTTGTATAGTACGATAATCATGCCACCGTTCCCGTACAGAG
AGAATACTATAATAAATGTGAGTATAGTTGCCAACACGGTTTGTTCAGTT
CCAGTATAGTTTGAAGCGAAATAGTCATCACttgatgacgtaatgttttc
catttcgatttttattttaatcAGCTCGATCTAGAGTTATTTTTTGTTAT
CCCTTAAATGATAAGAGTTAATATTTAGATTATGTATTTTTGTAATGCTG
ATTGTTTTAATTTCTAAAATGATGGTCTTAATTTTAAAGACCTCCTCTAC
TAACACAACAACTATTGCCGACATTTTGTCCCAGAAAACTTGAACCTATT
CCTCTGCGTTGCAAATCGTTGACGTATTGCTCAGCTTTACATTAAGAATA
TCGAG
Run BLAST on NCBI

protein sequence of TCONS_00034984-protein

>TCONS_00034984-protein ID=TCONS_00034984-protein|Name=TCONS_00034984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp
MENITSSSDDYFASNYTGTEQTVLATILTFIIVFSLYGNGGMIIVLYKND
RMWNSTNILIGNLAVAAFLTTLLIMPFSLTSMVLKYWPFAEGPICKFNAF
LASQLLLYTIFIHTMISIDKYFAVVKPFSRAMTVRRTWTSSFILWTIAIF
MSLGPLIHIGEYRYNRTALVCGVGFPKNKIDSIYMLFLFALGFIIPNIVN
AHVYFKVFRAVRIHTKRISKTSVTSTCDVMKLQQRLVLTAFCSLACFLLC
WTPFAVYVAMAVTSKSIDSIPHGLGVSAYWSGYMYNAINPLIICTMSTRF
GDGIYELTISILRAPFDFYDFCKRGGGWEQGKEGSNTSSTTNLHQMKRLE
PSPTIETELSTLPRTPIGSDPALYSSSSSVSVTAESSLLTIDCKQKSKEN
GAKNIVSSASIVLTTNKSQESLHSDSNPA
Run BLAST on NCBI

transcript from alignment at sc0001237:40943..42697

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034984 ID=TCONS_00034984|Name=TCONS_00034984|organism=Clytia hemisphaerica|type=transcript|length=1755bp|location=Sequence derived from alignment at sc0001237:40943..42697 (Clytia hemisphaerica)
CTCGATATTCTTAATGTAAAGCTGAGCAATACGTCAACGATTTGCAACGC
AGAGGAATAGGTTCAAGTTTTCTGGGACAAAATGTCGGCAATAGTTGTTG
TGTTAGTAGAGGAGGTCTTTAAAATTAAGACCATCATTTTAGAAATTAAA
ACAATCAGCATTACAAAAATACATAATCTAAATATTAACTCTTATCATTT
AAGGGATAACAAAAAATAACTCTAGATCGAGCTgattaaaataaaaatcg
aaatggaaaacattacgtcatcaaGTGATGACTATTTCGCTTCAAACTAT
ACTGGAACTGAACAAACCGTGTTGGCAACTATACTCACATTTATTATAGT
ATTCTCTCTGTACGGGAACGGTGGCATGATTATCGTACTATACAAAAACG
ATCGTATGTGGAATAGTACAAACATATTAATCGGCAATTTAGCCGTTGCT
GCATTCCTTACAACTCTTTTAATAATGCCGTTTAGTTTAACATCAATGGT
GTTGAAATACTGGCCTTTCGCTGAAGGCCCTATATGTAAATTCAACGCAT
TTTTAGCGTCACAATTATTACTGTATACAATCTTTATACATACTATGATC
AGTATAGATAAATATTTCGCTGTCGTGAAACCGTTTAGTAGAGCAATGAC
CGTGAGGCGCACGTGGACGAGTAGCTTCATCTTATGGACTATAGCAATTT
TTATGTCTCTCGGGCCGTTGATCCATATTGGCGAATACCGTTACAACAGA
ACGGCCCTTGTATGCGGGGTCGGTTTCCCGAAGAACAAAATCGATTCAAT
TTACATGTTGTTTTTATTCGCGCTTGGATTTATTATACCGAACATTGTGA
ACGCGCATGTCTATTTCAAAGTATTCCGGGCTGTCCGTATTCATACTAAG
CGGATAAGCAAAACATCGGTCACTAGTACGTGCGATGTTATGAAGCTCCA
ACAACGTTTAGTGTTAACTGCGTTTTGTAGTTTAGCATGTTTTCTATTAT
GTTGGACTCCCTTCGCTGTTTATGTTGCCATGGCAGTAACATCGAAATCG
ATTGATAGTATCCCACATGGTTTGGGCGTGTCCGCATATTGGTCCGGATA
CATGTATAACGCAATTAATCCACTCATCATATGTACGATGAGTACGCGAT
TCGGAGATGGGATTTACGAGCTAACAATCTCAATATTACGAGCTCCTTTc
gatttttacgatttttgtaAACGTGGAGGAGGTTGGGAACAAGGAAAAGA
GGGCTCAAATACATCATCAACTACAAATTTACATCAAATGAAAAGACTCG
AACCCAGTCCTACAATTGAAACAGAGTTATCAACTTTACCGCGAACTCCA
ATTGGTTCGGATCCGGCACTTTATTCTTCTTCCTCCTCAGTTTCGGTCAC
GGCAGAAAGTTCATTGCTAACGAttgattgtaaacaaaaaagcaagGAGA
ATGGGGCGAAAAACATTGTCTCGTCAGCTTCTATTGTTTTAACAACCAAT
AAGAGTCAAGAATCACTGCATTCAGATAGTAACCCAGcataatttttctt
attttttgcaccATTGNTACTGCATACAGATAGTAACCCAGcataatttt
tcttattttttgcaccATTGATGAGCTTTTATAATTgaattttcatgaaa
tataACAATTTCTGAAATTAATTAACTTTGCATAGCTTTTACTGACATCC
TGGTATCGCCTCAAGGATCCTGAAAATGTGATACacagatttttttgtat
ttttg

Coding sequence (CDS) from alignment at sc0001237:40943..42697

>TCONS_00034984 ID=TCONS_00034984|Name=TCONS_00034984|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0001237:40943..42697 (Clytia hemisphaerica)
atggaaaacattacgtcatcaaGTGATGACTATTTCGCTTCAAACTATAC
TGGAACTGAACAAACCGTGTTGGCAACTATACTCACATTTATTATAGTAT
TCTCTCTGTACGGGAACGGTGGCATGATTATCGTACTATACAAAAACGAT
CGTATGTGGAATAGTACAAACATATTAATCGGCAATTTAGCCGTTGCTGC
ATTCCTTACAACTCTTTTAATAATGCCGTTTAGTTTAACATCAATGGTGT
TGAAATACTGGCCTTTCGCTGAAGGCCCTATATGTAAATTCAACGCATTT
TTAGCGTCACAATTATTACTGTATACAATCTTTATACATACTATGATCAG
TATAGATAAATATTTCGCTGTCGTGAAACCGTTTAGTAGAGCAATGACCG
TGAGGCGCACGTGGACGAGTAGCTTCATCTTATGGACTATAGCAATTTTT
ATGTCTCTCGGGCCGTTGATCCATATTGGCGAATACCGTTACAACAGAAC
GGCCCTTGTATGCGGGGTCGGTTTCCCGAAGAACAAAATCGATTCAATTT
ACATGTTGTTTTTATTCGCGCTTGGATTTATTATACCGAACATTGTGAAC
GCGCATGTCTATTTCAAAGTATTCCGGGCTGTCCGTATTCATACTAAGCG
GATAAGCAAAACATCGGTCACTAGTACGTGCGATGTTATGAAGCTCCAAC
AACGTTTAGTGTTAACTGCGTTTTGTAGTTTAGCATGTTTTCTATTATGT
TGGACTCCCTTCGCTGTTTATGTTGCCATGGCAGTAACATCGAAATCGAT
TGATAGTATCCCACATGGTTTGGGCGTGTCCGCATATTGGTCCGGATACA
TGTATAACGCAATTAATCCACTCATCATATGTACGATGAGTACGCGATTC
GGAGATGGGATTTACGAGCTAACAATCTCAATATTACGAGCTCCTTTcga
tttttacgatttttgtaAACGTGGAGGAGGTTGGGAACAAGGAAAAGAGG
GCTCAAATACATCATCAACTACAAATTTACATCAAATGAAAAGACTCGAA
CCCAGTCCTACAATTGAAACAGAGTTATCAACTTTACCGCGAACTCCAAT
TGGTTCGGATCCGGCACTTTATTCTTCTTCCTCCTCAGTTTCGGTCACGG
CAGAAAGTTCATTGCTAACGAttgattgtaaacaaaaaagcaagGAGAAT
GGGGCGAAAAACATTGTCTCGTCAGCTTCTATTGTTTTAACAACCAATAA
GAGTCAAGAATCACTGCATTCAGATAGTAACCCAGcataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020369XLOC_020369Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034984-proteinTCONS_00034984-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034984-exon-sc0001237-1491911889:40943..42697TCONS_00034984-exon-sc0001237-1491911889:40943..42697Clytia hemisphaericaexon
TCONS_00034984-exon-sc0001237-1510915933:40943..42697TCONS_00034984-exon-sc0001237-1510915933:40943..42697Clytia hemisphaericaexon
TCONS_00034984-exon-sc0001237-1575043694:40943..42697TCONS_00034984-exon-sc0001237-1575043694:40943..42697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001237supercontigsc0001237:40943..42697 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.94975	9.354	4.59899	4.06725	8.88173	5.60009	4.396	4.75076	2.2432	3.32948	2.53419	2.72043	1.19044	1.20458	0.312736	0.209759	0.861352	0.723944	3.39081	1.83794	1.08719	1.42854	7.99879	7.91794	1.92179	2.35284	2.80051	1.74625	2.01218	2.4653
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00034984 vs. Swiss-Prot (Human)
Match: NPFF2 (Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFFR2 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.112e-19
Identity = 75/321 (23.36%), Postives = 142/321 (44.24%), Query Frame = -1 
Query:  586 FASNYTGTEQTVLATILTFIIVFSL--YGNGGMIIVLYKNDRMWNSTNILIGNLAVAAFLTTLLIMPFSLTSMVLKYWPFAEGPICKFNAFLASQLLLYTIFIHTMISIDKYFAVVKPFSRAMTVRRTWTSSFILWTIAIFMSLGP---LIHIGEYRYNRTAL----------VCGVGFPKNKIDSIYMLFLFALGFIIP----NIVNAHVYFKVFRAVRIHTKRISKTSVTSTCDVMKLQQRLVLTAFCSLACFLLCWTPFAVYVAMAVTSKSIDSIPHGLGVS-------AYWSGYMYNAINPLIICTMSTRFGDGIYE 1470
            + + Y    Q     I+++ ++F L   GN  +  ++ +N  M   TN+ I NLA++  L  +  MP +L   ++  WPF    +CK +  +    +  ++F    I++D++  VV PF   +T++  +    I+W +AI + + P   ++H+ E +Y R  L           C   +P  ++  IY   LFA  ++ P     I+   +   +FRA   HT R ++        V + +Q+++         F+L W P      + + S   D  P+ L +        A+W  +  +++NP+I    +  F  G  E
Sbjct:  136 YVNYYLHQPQVAAIFIISYFLIFFLCMMGNTVVCFIVMRNKHMHTVTNLFILNLAISDLLVGIFCMPITLLDNIIAGWPFG-NTMCKISGLVQGISVAASVFTLVAIAVDRFQCVVYPFKPKLTIKTAFVIIMIIWVLAITI-MSPSAVMLHVQEEKYYRVRLNSQNKTSPVYWCREDWPNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFRAAVPHTGRKNQEQWHV---VSRKKQKIIKMLLIVALLFILSWLPLW---TLMMLSDYADLSPNELQIINIYIYPFAHWLAFGNSSVNPIIYGFFNENFRRGFQE 448
The following BLAST results are available for this feature:
BLAST of TCONS_00034984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPFF21.112e-1923.36Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFF... [more]
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