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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034981 ID=TCONS_00034981|Name=TCONS_00034981|organism=Clytia hemisphaerica|type=transcript|length=4006bpRun BLAST on NCBI transcript from alignment at sc0001237:45311..60271- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00034981 ID=TCONS_00034981|Name=TCONS_00034981|organism=Clytia hemisphaerica|type=transcript|length=14961bp|location=Sequence derived from alignment at sc0001237:45311..60271- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00034981 vs. Swiss-Prot (Human)
Match: M3K20 (Mitogen-activated protein kinase kinase kinase 20 OS=Homo sapiens GN=MAP3K20 PE=1 SV=3) HSP 1 Score: 369.007 bits (946), Expect = 1.842e-145 Identity = 195/386 (50.52%), Postives = 259/386 (67.10%), Query Frame = 1
Query: 505 LCDFGSSRYLDQTTKMSMAGTFPWMAPEVIQSMPVSETCDTYSYGIVLWEMLTGEIPFKGMEGVQVAWLVVVKEERLTIPSSCPVEFAKLLKSCWLKDPKARPFFHEMQNILGRMCVDNELEEATNHFLNAKLDWKYEIEMTIERLKKVERNLTSKEKELQDREMRVLQKERKM---NISKRLNKMRLSEWATTDVLIWMEQL---GNEAVDLYQYAQVFLENHINGRRLIQLTDADLKEMNILSYGHRMDLLAQIAKLTEELEHLSHFPPLQKVPSKEDDCAQHKCVNLTLLFGNHCRLGPTPMDHKWKVYVEVDGDEDVLTAIKEVTLKST---EEQVVMTQQPFVMSKWKTAGHDNSPIFVDILVSYESHVKKPKQTKHTHEV 1635
+CDFG+SR+ + TT MS+ GTFPWMAPEVIQS+PVSETCDTYSYG+VLWEMLT E+PFKG+EG+QVAWLVV K ERLTIPSSCP FA+LL CW D K RP F ++ +IL M D L + N FL+ K +W+ EIE T+ERLKK+ER+L+ KE+EL++RE R+ E+K+ + + L + W DV W++QL G+ + ++ YA +F EN+I G+RL+ L + DLK+M I+S GH + + I KLT + +L HFPPL K E + + K VNL L+FG H + G P D KWK+Y+E+DGDE +T IK+VT + E + MT+ PFVM KW G S V+ V+YES V+ PK TKH H +
Sbjct: 149 ICDFGASRFHNHTTHMSLVGTFPWMAPEVIQSLPVSETCDTYSYGVVLWEMLTREVPFKGLEGLQVAWLVVEKNERLTIPSSCPRSFAELLHQCWEADAKKRPSFKQIISILESMSNDTSLPDKCNSFLHNKAEWRCEIEATLERLKKLERDLSFKEQELKERERRLKMWEQKLTEQSNTPLLPSFEIGAWTEDDVYCWVQQLVRKGDSSAEMSVYASLFKENNITGKRLLLLEEEDLKDMGIVSKGHIIHFKSAIEKLTHDYINLFHFPPLIKDSGGEPEENEEKIVNLELVFGFHLKPGTGPQDCKWKMYMEMDGDEIAITYIKDVTFNTNLPDAEILKMTKPPFVMEKW-IVGIAKSQT-VECTVTYESDVRTPKSTKHVHSI 532 HSP 2 Score: 168.318 bits (425), Expect = 1.842e-145 Identity = 73/133 (54.89%), Postives = 101/133 (75.94%), Query Frame = 3
Query: 120 FAELAYDDFEFFEKLGDGSFGSVYRGRWKSQDKEVAIKKILTLGEEADVLCVLSHKHIIQFYGAVSQKPNFCLITEYARFGSLYDYIAKNK---LDFHQILSWSKQIALGLSYLHNEAPFKIIHRDLKSKNTL 509
F ++ +DD +FFE G GSFGSVYR +W SQDKEVA+KK+L + +EA++L VLSH++IIQFYG + + PN+ ++TEYA GSLYDYI N+ +D I++W+ +A G+ YLH EAP K+IHRDLKS+N +
Sbjct: 8 FVQIKFDDLQFFENCGGGSFGSVYRAKWISQDKEVAVKKLLKIEKEAEILSVLSHRNIIQFYGVILEPPNYGIVTEYASLGSLYDYINSNRSEEMDMDHIMTWATDVAKGMHYLHMEAPVKVIHRDLKSRNVV 140 The following BLAST results are available for this feature:
BLAST of TCONS_00034981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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